BolC1t00622H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00622H-R
Unique Name	BolC1t00622H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:3399443..3401223 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1287

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00622H	BolC1t00622H	Brassica oleracea HDEM	gene	C1 3399443..3401223 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00622H-R	BolC1t00622H-R-P	Brassica oleracea HDEM	polypeptide	C1 3399443..3401223 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00622H_exon1	BolC1t00622H_exon1	Brassica oleracea HDEM	exon	C1 3399443..3400201 +
BolC1t00622H_exon2	BolC1t00622H_exon2	Brassica oleracea HDEM	exon	C1 3400455..3400898 +
BolC1t00622H_exon3	BolC1t00622H_exon3	Brassica oleracea HDEM	exon	C1 3400997..3401079 +
BolC1t00622H_exon4	BolC1t00622H_exon4	Brassica oleracea HDEM	exon	C1 3401223..3401223 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00622H	BolC1t00622H	Brassica oleracea HDEM	CDS	C1 3399443..3400201 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:3399443..3401223+
coding sequence from alignment at C1:3399443..3401223+

spliced messenger RNA

>BolC1t00622H-R ID=BolC1t00622H-R|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1287bp|location=Sequence derived from alignment at C1:3399443..3401223+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACAGAAAACAAAGAAGCTGTTCAGACAGAAGCAAAAGACATGAA
AAACGAAGATGTAGACATTTGCCGGATTTGCCAGTCACCGGAGGAGCCAG
ACAATCCGTTGAGGCATCCTTGTGCATGTCGTGGCTCTCTCAAGTACGTC
CATACTGACTGTATCTTCCTCTGGATCAATCGTCGCAGACGCAAGCACTG
CGAGATTTGTAAACGCAGCTACTCAATCGTTCCGGTCTATTCCGACAACG
CTCCAGAGAGACTTCCATGTCAAGAACTCTTAAAGAGCCTTCTACTGAGA
GCATTTCGTTTCATGACTCTGATCCTTCCTTGGCTATTGGCGATTACTTT
CCACTCGTACTGCATGTTCTTTCTCGAGAGCAAGAGAGTTTTTGAACTGT
CATGTTTCTTTCTTGGTCTTATTTACACCGTCGAGATAGTGACTGAAATC
ACTTTCATCGTTGTTCTAAGGGTAGTATACGAAGAGCTTGTAAGAACAGA
ACACGAGTTGTTACGCCGTGTGCATCTCATAGCGAATGGTCTAAGACATA
AGGGTGTTACTAGAGTTCTGCTTGTGTTATGGAAGTATATGAGGGTTCTT
TGTGATTGGTGGCATGATCAGCTCTTGCAGTTACCTTTCTTCCACGACAT
GTTTATGAGAGGACCTCTTGCACTTGCGTTTGTTCCAAGAAACACACAGC
TTGATGAGTTTGGATCCATAAGAAGGTTTCTTTTCTTCTTGGATGACAAC
ACTTTTTCTGTTCTTGCCATCAACATCTCTTGGTCTTTCCTCGACTGTAT
GTTACCTTATTTGATTGGCCAAGCTGTCTTTGTGTTCCTACACTGTGTCC
CTCCACACGGTTGGGTTTTGGAAAACATATCTGAGATTACAGTTGGACAC
ATAGTTCTATTCTCAGTTTGGTTGGCTTACCTTAAAAGCGTTTTCACTCT
GATTCGGAATCCAACCAGAACAAGATGGTTTTCACTGTCAGTTAAAGATA
CATTGATCTTGTGTTTTAAAACCATCCTTCTGCCTTGGATGCTTGGTTTC
TGGATAGATTTCTGTACGTTCCCTCTAACCGGAGCAACGGTTTCTCAACG
GCTTGAGGTTGTTTCAGACTATCCACACGTGGCTGCCAAACATTGGTGTG
TAGGAATTGGGTACTTGCTAGTTGCTTTGTCTTGCATGAAGCTTATCCAG
GAGATGTCACATAACCAAACTACAAAATCACTAAACTGCATCTACGTTCC
CTACTCTTTGCGTTTGCTTTCCATGGAGCAGTGGTAG

protein sequence of BolC1t00622H-R

>BolC1t00622H-R-P ID=BolC1t00622H-R-P|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=429bp
METENKEAVQTEAKDMKNEDVDICRICQSPEEPDNPLRHPCACRGSLKYV
HTDCIFLWINRRRRKHCEICKRSYSIVPVYSDNAPERLPCQELLKSLLLR
AFRFMTLILPWLLAITFHSYCMFFLESKRVFELSCFFLGLIYTVEIVTEI
TFIVVLRVVYEELVRTEHELLRRVHLIANGLRHKGVTRVLLVLWKYMRVL
CDWWHDQLLQLPFFHDMFMRGPLALAFVPRNTQLDEFGSIRRFLFFLDDN
TFSVLAINISWSFLDCMLPYLIGQAVFVFLHCVPPHGWVLENISEITVGH
IVLFSVWLAYLKSVFTLIRNPTRTRWFSLSVKDTLILCFKTILLPWMLGF
WIDFCTFPLTGATVSQRLEVVSDYPHVAAKHWCVGIGYLLVALSCMKLIQ
EMSHNQTTKSLNCIYVPYSLRLLSMEQW.

mRNA from alignment at C1:3399443..3401223+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00622H-R ID=BolC1t00622H-R|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1781bp|location=Sequence derived from alignment at C1:3399443..3401223+ (Brassica oleracea HDEM)
ATGGAGACAGAAAACAAAGAAGCTGTTCAGACAGAAGCAAAAGACATGAA
AAACGAAGATGTAGACATTTGCCGGATTTGCCAGTCACCGGAGGAGCCAG
ACAATCCGTTGAGGCATCCTTGTGCATGTCGTGGCTCTCTCAAGTACGTC
CATACTGACTGTATCTTCCTCTGGATCAATCGTCGCAGACGCAAGCACTG
CGAGATTTGTAAACGCAGCTACTCAATCGTTCCGGTCTATTCCGACAACG
CTCCAGAGAGACTTCCATGTCAAGAACTCTTAAAGAGCCTTCTACTGAGA
GCATTTCGTTTCATGACTCTGATCCTTCCTTGGCTATTGGCGATTACTTT
CCACTCGTACTGCATGTTCTTTCTCGAGAGCAAGAGAGTTTTTGAACTGT
CATGTTTCTTTCTTGGTCTTATTTACACCGTCGAGATAGTGACTGAAATC
ACTTTCATCGTTGTTCTAAGGGTAGTATACGAAGAGCTTGTAAGAACAGA
ACACGAGTTGTTACGCCGTGTGCATCTCATAGCGAATGGTCTAAGACATA
AGGGTGTTACTAGAGTTCTGCTTGTGTTATGGAAGTATATGAGGGTTCTT
TGTGATTGGTGGCATGATCAGCTCTTGCAGTTACCTTTCTTCCACGACAT
GTTTATGAGAGGACCTCTTGCACTTGCGTTTGTTCCAAGAAACACACAGC
TTGATGAGTTTGGATCCATAAGAAGGTTTCTTTTCTTCTTGGATGACAAC
ACTTTTTCTGTAAGTACTCTTAACCTTAATGCCTTGGCCACAATTAAAAA
AAAAAACTATTTTGCATAGTTAATATCATATTAATAAACTAATTAAACTA
TGTAATATGTAATTGTTTGTTAGAAATCATCTCCATTAGTTATTTGTTTT
TATAAAATATATAGTTATTATGATAAATAAAAAATTTGTATACAATTTTC
TAATATATACTACTGAAATTAAAATATTTTTAATTTTGTATGGGGTCTTG
TTTGCTCTGTAGGTTCTTGCCATCAACATCTCTTGGTCTTTCCTCGACTG
TATGTTACCTTATTTGATTGGCCAAGCTGTCTTTGTGTTCCTACACTGTG
TCCCTCCACACGGTTGGGTTTTGGAAAACATATCTGAGATTACAGTTGGA
CACATAGTTCTATTCTCAGTTTGGTTGGCTTACCTTAAAAGCGTTTTCAC
TCTGATTCGGAATCCAACCAGAACAAGATGGTTTTCACTGTCAGTTAAAG
ATACATTGATCTTGTGTTTTAAAACCATCCTTCTGCCTTGGATGCTTGGT
TTCTGGATAGATTTCTGTACGTTCCCTCTAACCGGAGCAACGGTTTCTCA
ACGGCTTGAGGTTGTTTCAGACTATCCACACGTGGCTGCCAAACATTGGT
GTGTAGGAATTGGGTACTTGCTAGTTGCTTTGTCTTGCATGAAGCTTATC
CAGGAGGTAACGTTTTGATCTTTGTTTCATAATTTACTCAGCTTCTTATT
CTTCTTCTTCCTTTTGACAGATTGTTCAGAAACGTGCCTTTTGGTATCTC
TTAGATGTCACATAACCAAACTACAAAATCACTAAACTGCATCTACGTTC
CCTACTCTTTGCGTTTGCTTTCCATGGAGCAGTGGTAGTGATTGTGTTCC
ACTTACCGATAAAGACAATCACTCTCACCATCCAGTCCTTTTTCCCTCTC
AAATTTGGGCAAAGCTCTCACCACACACTGTTTTCTAATTTCTTGATTCT
TGAATAAAAAATGTGTTATAAATGGTGCAGG

Coding sequence (CDS) from alignment at C1:3399443..3401223+

>BolC1t00622H-R ID=BolC1t00622H-R|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=CDS|length=1287bp|location=Sequence derived from alignment at C1:3399443..3401223+ (Brassica oleracea HDEM)
ATGGAGACAGAAAACAAAGAAGCTGTTCAGACAGAAGCAAAAGACATGAA
AAACGAAGATGTAGACATTTGCCGGATTTGCCAGTCACCGGAGGAGCCAG
ACAATCCGTTGAGGCATCCTTGTGCATGTCGTGGCTCTCTCAAGTACGTC
CATACTGACTGTATCTTCCTCTGGATCAATCGTCGCAGACGCAAGCACTG
CGAGATTTGTAAACGCAGCTACTCAATCGTTCCGGTCTATTCCGACAACG
CTCCAGAGAGACTTCCATGTCAAGAACTCTTAAAGAGCCTTCTACTGAGA
GCATTTCGTTTCATGACTCTGATCCTTCCTTGGCTATTGGCGATTACTTT
CCACTCGTACTGCATGTTCTTTCTCGAGAGCAAGAGAGTTTTTGAACTGT
CATGTTTCTTTCTTGGTCTTATTTACACCGTCGAGATAGTGACTGAAATC
ACTTTCATCGTTGTTCTAAGGGTAGTATACGAAGAGCTTGTAAGAACAGA
ACACGAGTTGTTACGCCGTGTGCATCTCATAGCGAATGGTCTAAGACATA
AGGGTGTTACTAGAGTTCTGCTTGTGTTATGGAAGTATATGAGGGTTCTT
TGTGATTGGTGGCATGATCAGCTCTTGCAGTTACCTTTCTTCCACGACAT
GTTTATGAGAGGACCTCTTGCACTTGCGTTTGTTCCAAGAAACACACAGC
TTGATGAGTTTGGATCCATAAGAAGGTTTCTTTTCTTCTTGGATGACAAC
ACTTTTTCTGTTCTTGCCATCAACATCTCTTGGTCTTTCCTCGACTGTAT
GTTACCTTATTTGATTGGCCAAGCTGTCTTTGTGTTCCTACACTGTGTCC
CTCCACACGGTTGGGTTTTGGAAAACATATCTGAGATTACAGTTGGACAC
ATAGTTCTATTCTCAGTTTGGTTGGCTTACCTTAAAAGCGTTTTCACTCT
GATTCGGAATCCAACCAGAACAAGATGGTTTTCACTGTCAGTTAAAGATA
CATTGATCTTGTGTTTTAAAACCATCCTTCTGCCTTGGATGCTTGGTTTC
TGGATAGATTTCTGTACGTTCCCTCTAACCGGAGCAACGGTTTCTCAACG
GCTTGAGGTTGTTTCAGACTATCCACACGTGGCTGCCAAACATTGGTGTG
TAGGAATTGGGTACTTGCTAGTTGCTTTGTCTTGCATGAAGCTTATCCAG
GAGATGTCACATAACCAAACTACAAAATCACTAAACTGCATCTACGTTCC
CTACTCTTTGCGTTTGCTTTCCATGGAGCAGTGGTAG

Orthology

View orthology data for BolC1t00622H-R