BolC1t00622H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00622H-R
Unique NameBolC1t00622H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:3399443..3401223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size1287
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00622HBolC1t00622HBrassica oleracea HDEMgeneC1 3399443..3401223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00622H-RBolC1t00622H-R-PBrassica oleracea HDEMpolypeptideC1 3399443..3401223 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00622H_exon1BolC1t00622H_exon1Brassica oleracea HDEMexonC1 3399443..3400201 +
BolC1t00622H_exon2BolC1t00622H_exon2Brassica oleracea HDEMexonC1 3400455..3400898 +
BolC1t00622H_exon3BolC1t00622H_exon3Brassica oleracea HDEMexonC1 3400997..3401079 +
BolC1t00622H_exon4BolC1t00622H_exon4Brassica oleracea HDEMexonC1 3401223..3401223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00622HBolC1t00622HBrassica oleracea HDEMCDSC1 3399443..3400201 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00622H-R ID=BolC1t00622H-R|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1287bp|location=Sequence derived from alignment at C1:3399443..3401223+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACAGAAAACAAAGAAGCTGTTCAGACAGAAGCAAAAGACATGAA
AAACGAAGATGTAGACATTTGCCGGATTTGCCAGTCACCGGAGGAGCCAG
ACAATCCGTTGAGGCATCCTTGTGCATGTCGTGGCTCTCTCAAGTACGTC
CATACTGACTGTATCTTCCTCTGGATCAATCGTCGCAGACGCAAGCACTG
CGAGATTTGTAAACGCAGCTACTCAATCGTTCCGGTCTATTCCGACAACG
CTCCAGAGAGACTTCCATGTCAAGAACTCTTAAAGAGCCTTCTACTGAGA
GCATTTCGTTTCATGACTCTGATCCTTCCTTGGCTATTGGCGATTACTTT
CCACTCGTACTGCATGTTCTTTCTCGAGAGCAAGAGAGTTTTTGAACTGT
CATGTTTCTTTCTTGGTCTTATTTACACCGTCGAGATAGTGACTGAAATC
ACTTTCATCGTTGTTCTAAGGGTAGTATACGAAGAGCTTGTAAGAACAGA
ACACGAGTTGTTACGCCGTGTGCATCTCATAGCGAATGGTCTAAGACATA
AGGGTGTTACTAGAGTTCTGCTTGTGTTATGGAAGTATATGAGGGTTCTT
TGTGATTGGTGGCATGATCAGCTCTTGCAGTTACCTTTCTTCCACGACAT
GTTTATGAGAGGACCTCTTGCACTTGCGTTTGTTCCAAGAAACACACAGC
TTGATGAGTTTGGATCCATAAGAAGGTTTCTTTTCTTCTTGGATGACAAC
ACTTTTTCTGTTCTTGCCATCAACATCTCTTGGTCTTTCCTCGACTGTAT
GTTACCTTATTTGATTGGCCAAGCTGTCTTTGTGTTCCTACACTGTGTCC
CTCCACACGGTTGGGTTTTGGAAAACATATCTGAGATTACAGTTGGACAC
ATAGTTCTATTCTCAGTTTGGTTGGCTTACCTTAAAAGCGTTTTCACTCT
GATTCGGAATCCAACCAGAACAAGATGGTTTTCACTGTCAGTTAAAGATA
CATTGATCTTGTGTTTTAAAACCATCCTTCTGCCTTGGATGCTTGGTTTC
TGGATAGATTTCTGTACGTTCCCTCTAACCGGAGCAACGGTTTCTCAACG
GCTTGAGGTTGTTTCAGACTATCCACACGTGGCTGCCAAACATTGGTGTG
TAGGAATTGGGTACTTGCTAGTTGCTTTGTCTTGCATGAAGCTTATCCAG
GAGATGTCACATAACCAAACTACAAAATCACTAAACTGCATCTACGTTCC
CTACTCTTTGCGTTTGCTTTCCATGGAGCAGTGGTAG
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protein sequence of BolC1t00622H-R

>BolC1t00622H-R-P ID=BolC1t00622H-R-P|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=429bp
METENKEAVQTEAKDMKNEDVDICRICQSPEEPDNPLRHPCACRGSLKYV
HTDCIFLWINRRRRKHCEICKRSYSIVPVYSDNAPERLPCQELLKSLLLR
AFRFMTLILPWLLAITFHSYCMFFLESKRVFELSCFFLGLIYTVEIVTEI
TFIVVLRVVYEELVRTEHELLRRVHLIANGLRHKGVTRVLLVLWKYMRVL
CDWWHDQLLQLPFFHDMFMRGPLALAFVPRNTQLDEFGSIRRFLFFLDDN
TFSVLAINISWSFLDCMLPYLIGQAVFVFLHCVPPHGWVLENISEITVGH
IVLFSVWLAYLKSVFTLIRNPTRTRWFSLSVKDTLILCFKTILLPWMLGF
WIDFCTFPLTGATVSQRLEVVSDYPHVAAKHWCVGIGYLLVALSCMKLIQ
EMSHNQTTKSLNCIYVPYSLRLLSMEQW.
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mRNA from alignment at C1:3399443..3401223+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00622H-R ID=BolC1t00622H-R|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1781bp|location=Sequence derived from alignment at C1:3399443..3401223+ (Brassica oleracea HDEM)
ATGGAGACAGAAAACAAAGAAGCTGTTCAGACAGAAGCAAAAGACATGAA AAACGAAGATGTAGACATTTGCCGGATTTGCCAGTCACCGGAGGAGCCAG ACAATCCGTTGAGGCATCCTTGTGCATGTCGTGGCTCTCTCAAGTACGTC CATACTGACTGTATCTTCCTCTGGATCAATCGTCGCAGACGCAAGCACTG CGAGATTTGTAAACGCAGCTACTCAATCGTTCCGGTCTATTCCGACAACG CTCCAGAGAGACTTCCATGTCAAGAACTCTTAAAGAGCCTTCTACTGAGA GCATTTCGTTTCATGACTCTGATCCTTCCTTGGCTATTGGCGATTACTTT CCACTCGTACTGCATGTTCTTTCTCGAGAGCAAGAGAGTTTTTGAACTGT CATGTTTCTTTCTTGGTCTTATTTACACCGTCGAGATAGTGACTGAAATC ACTTTCATCGTTGTTCTAAGGGTAGTATACGAAGAGCTTGTAAGAACAGA ACACGAGTTGTTACGCCGTGTGCATCTCATAGCGAATGGTCTAAGACATA AGGGTGTTACTAGAGTTCTGCTTGTGTTATGGAAGTATATGAGGGTTCTT TGTGATTGGTGGCATGATCAGCTCTTGCAGTTACCTTTCTTCCACGACAT GTTTATGAGAGGACCTCTTGCACTTGCGTTTGTTCCAAGAAACACACAGC TTGATGAGTTTGGATCCATAAGAAGGTTTCTTTTCTTCTTGGATGACAAC ACTTTTTCTGTAAGTACTCTTAACCTTAATGCCTTGGCCACAATTAAAAA AAAAAACTATTTTGCATAGTTAATATCATATTAATAAACTAATTAAACTA TGTAATATGTAATTGTTTGTTAGAAATCATCTCCATTAGTTATTTGTTTT TATAAAATATATAGTTATTATGATAAATAAAAAATTTGTATACAATTTTC TAATATATACTACTGAAATTAAAATATTTTTAATTTTGTATGGGGTCTTG TTTGCTCTGTAGGTTCTTGCCATCAACATCTCTTGGTCTTTCCTCGACTG TATGTTACCTTATTTGATTGGCCAAGCTGTCTTTGTGTTCCTACACTGTG TCCCTCCACACGGTTGGGTTTTGGAAAACATATCTGAGATTACAGTTGGA CACATAGTTCTATTCTCAGTTTGGTTGGCTTACCTTAAAAGCGTTTTCAC TCTGATTCGGAATCCAACCAGAACAAGATGGTTTTCACTGTCAGTTAAAG ATACATTGATCTTGTGTTTTAAAACCATCCTTCTGCCTTGGATGCTTGGT TTCTGGATAGATTTCTGTACGTTCCCTCTAACCGGAGCAACGGTTTCTCA ACGGCTTGAGGTTGTTTCAGACTATCCACACGTGGCTGCCAAACATTGGT GTGTAGGAATTGGGTACTTGCTAGTTGCTTTGTCTTGCATGAAGCTTATC CAGGAGGTAACGTTTTGATCTTTGTTTCATAATTTACTCAGCTTCTTATT CTTCTTCTTCCTTTTGACAGATTGTTCAGAAACGTGCCTTTTGGTATCTC TTAGATGTCACATAACCAAACTACAAAATCACTAAACTGCATCTACGTTC CCTACTCTTTGCGTTTGCTTTCCATGGAGCAGTGGTAGTGATTGTGTTCC ACTTACCGATAAAGACAATCACTCTCACCATCCAGTCCTTTTTCCCTCTC AAATTTGGGCAAAGCTCTCACCACACACTGTTTTCTAATTTCTTGATTCT TGAATAAAAAATGTGTTATAAATGGTGCAGG
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Coding sequence (CDS) from alignment at C1:3399443..3401223+

>BolC1t00622H-R ID=BolC1t00622H-R|Name=BolC1t00622H-R|organism=Brassica oleracea HDEM|type=CDS|length=1287bp|location=Sequence derived from alignment at C1:3399443..3401223+ (Brassica oleracea HDEM)
ATGGAGACAGAAAACAAAGAAGCTGTTCAGACAGAAGCAAAAGACATGAA
AAACGAAGATGTAGACATTTGCCGGATTTGCCAGTCACCGGAGGAGCCAG
ACAATCCGTTGAGGCATCCTTGTGCATGTCGTGGCTCTCTCAAGTACGTC
CATACTGACTGTATCTTCCTCTGGATCAATCGTCGCAGACGCAAGCACTG
CGAGATTTGTAAACGCAGCTACTCAATCGTTCCGGTCTATTCCGACAACG
CTCCAGAGAGACTTCCATGTCAAGAACTCTTAAAGAGCCTTCTACTGAGA
GCATTTCGTTTCATGACTCTGATCCTTCCTTGGCTATTGGCGATTACTTT
CCACTCGTACTGCATGTTCTTTCTCGAGAGCAAGAGAGTTTTTGAACTGT
CATGTTTCTTTCTTGGTCTTATTTACACCGTCGAGATAGTGACTGAAATC
ACTTTCATCGTTGTTCTAAGGGTAGTATACGAAGAGCTTGTAAGAACAGA
ACACGAGTTGTTACGCCGTGTGCATCTCATAGCGAATGGTCTAAGACATA
AGGGTGTTACTAGAGTTCTGCTTGTGTTATGGAAGTATATGAGGGTTCTT
TGTGATTGGTGGCATGATCAGCTCTTGCAGTTACCTTTCTTCCACGACAT
GTTTATGAGAGGACCTCTTGCACTTGCGTTTGTTCCAAGAAACACACAGC
TTGATGAGTTTGGATCCATAAGAAGGTTTCTTTTCTTCTTGGATGACAAC
ACTTTTTCTGTTCTTGCCATCAACATCTCTTGGTCTTTCCTCGACTGTAT
GTTACCTTATTTGATTGGCCAAGCTGTCTTTGTGTTCCTACACTGTGTCC
CTCCACACGGTTGGGTTTTGGAAAACATATCTGAGATTACAGTTGGACAC
ATAGTTCTATTCTCAGTTTGGTTGGCTTACCTTAAAAGCGTTTTCACTCT
GATTCGGAATCCAACCAGAACAAGATGGTTTTCACTGTCAGTTAAAGATA
CATTGATCTTGTGTTTTAAAACCATCCTTCTGCCTTGGATGCTTGGTTTC
TGGATAGATTTCTGTACGTTCCCTCTAACCGGAGCAACGGTTTCTCAACG
GCTTGAGGTTGTTTCAGACTATCCACACGTGGCTGCCAAACATTGGTGTG
TAGGAATTGGGTACTTGCTAGTTGCTTTGTCTTGCATGAAGCTTATCCAG
GAGATGTCACATAACCAAACTACAAAATCACTAAACTGCATCTACGTTCC
CTACTCTTTGCGTTTGCTTTCCATGGAGCAGTGGTAG
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