BolC1t00601H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00601H-R
Unique NameBolC1t00601H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:3251491..3254760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size1704
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00601HBolC1t00601HBrassica oleracea HDEMgeneC1 3251491..3254760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00601H-RBolC1t00601H-R-PBrassica oleracea HDEMpolypeptideC1 3251491..3254760 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00601H_exon1BolC1t00601H_exon1Brassica oleracea HDEMexonC1 3251491..3251636 -
BolC1t00601H_exon2BolC1t00601H_exon2Brassica oleracea HDEMexonC1 3251714..3251816 -
BolC1t00601H_exon3BolC1t00601H_exon3Brassica oleracea HDEMexonC1 3251994..3252183 -
BolC1t00601H_exon4BolC1t00601H_exon4Brassica oleracea HDEMexonC1 3252295..3252491 -
BolC1t00601H_exon5BolC1t00601H_exon5Brassica oleracea HDEMexonC1 3253086..3253850 -
BolC1t00601H_exon6BolC1t00601H_exon6Brassica oleracea HDEMexonC1 3254458..3254760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00601HBolC1t00601HBrassica oleracea HDEMCDSC1 3251491..3251636 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00601H-R ID=BolC1t00601H-R|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1704bp|location=Sequence derived from alignment at C1:3251491..3254760- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGTTGATCACAGCCAAAGCAATTATGAGTCATCATCATGTTTT
GTCCTCAACTAGAATCACTACACTTTGTTCCGACAAAGCCATCGACAACC
AACAAAGAAAAACAAAACTCCAAATCTCTCACCGATTTTTCTCCCGCCGA
ACAATATCTGCAGCTGTAATCAACTCAGCGTCGCCTGTGCCGAAGAAAGA
GACGGTGGAAGATGAGAGACGGTGTCATGTTGCGTGGACAAGTGTACAAC
AAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAAGATCCCCACTTGG
CTGAATGGTACGTATCTAAGAAACGGACCGGGCCTATGGAACATCGGAGA
CCACGACTTCCGACATCTCTTCGACGGCTACTCCACACTAGTCAAGCTCG
AATTCGACGACGGTCGTATATTCTCCGGCCACCGTCTCCTCGAATCCAAC
GCCTACAAAGCCGCCAAGAAACACAAGAAGCTCTGTTACCGCGAATTCTC
CGAGACTCCAAAACCGTCGAGAAGCAACTTCAAGAACCCTTTCTCCGGGG
TCGGAGAGATCGTCAAACTATTCTCCGGCGAGTCTTTAACGGACAACGCC
AACACCGGAGTGATCCGTCTCGGTGACGGACGTGTCATGTGCCTCACGGA
GACTCAAAAAGGATCGATTCTTGTCGACCATGATACGTTAGACACGATAG
GGAAGTTCAAATACGACGACGGTTTGTGCGATCACATGATCCACTCGGCG
CATCCCATCGTGACAGAGACGGAGATGTGGACGTTGATACCTGATCTTGT
TAAGCCTGGTTACCGGGTCGTGAGGATGGAGGCCGGGTCGAATAAAAGGG
AGGTTGTGGGGCGGGTTAAATGTCGGTCCGGGTCGTGGGGACCCGGGTGG
GTTCACTCGTTTGCGGTGACGGAGAATTATGTTTTGATACCGGAAATGCC
CCTGAGGTATTCGGTGAGGAATCTGCTTAGAGCTGAGCCGACGCCGCTTT
ACAAGTTTGAGTGGTGTCCTAACGACGGAGCTTTTGTTCATGTCATGTCC
AAACTCACTGGAGAAATCGTGGCAAGCGTGGAGGTCCCTGCATACTTAAC
GTTTCACTTCATAAACGCATACGAAGAAGATGAAAATGGAGACGGGAAAG
CGACGGTCATCATTGCAGATTGTTGCGAACACAACGCAGATACGCGGATA
CTCGATATGCTCCGTCTCCACACATTACGTTCCTCACATGGTGACGACGT
CTTACCCGACGCTAGGATTGGAAGATTCAGGATACCGTTGGATGGAAGCA
AGTACGGGAAACTGGAGACGGCAGTGGAGGCGGAGAAGCATGGGAGGGCG
ATGGATATGTGCAGCATCAACCCTTTGTATTTGGGTCTAAAGTATCGTTA
CGTTTATGCGTGTGGTGCTAAAAGACCTTGTAACTTCCCCAATGCCCTCA
CCAAGGTTGATATTGTGGAGAAGGAAGTGAAGATCTGGCACGAACATGGC
ATTATACCATCCGAGCCATTCTTTGTGCCTCGTCCAGGCGCAACCCATGA
AGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCT
ATGCGATATTGCTTGATGGAAGCTCCTTTGAAGAAATAGCAAGAGCCAAG
TTTCCTTATGGTCTTCCTTATGGCTTACATGGTTGCTGGATCCCCAAGCA
CTGA
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protein sequence of BolC1t00601H-R

>BolC1t00601H-R-P ID=BolC1t00601H-R-P|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=568bp
MASLITAKAIMSHHHVLSSTRITTLCSDKAIDNQQRKTKLQISHRFFSRR
TISAAVINSASPVPKKETVEDERRCHVAWTSVQQEKWEGELTVQGKIPTW
LNGTYLRNGPGLWNIGDHDFRHLFDGYSTLVKLEFDDGRIFSGHRLLESN
AYKAAKKHKKLCYREFSETPKPSRSNFKNPFSGVGEIVKLFSGESLTDNA
NTGVIRLGDGRVMCLTETQKGSILVDHDTLDTIGKFKYDDGLCDHMIHSA
HPIVTETEMWTLIPDLVKPGYRVVRMEAGSNKREVVGRVKCRSGSWGPGW
VHSFAVTENYVLIPEMPLRYSVRNLLRAEPTPLYKFEWCPNDGAFVHVMS
KLTGEIVASVEVPAYLTFHFINAYEEDENGDGKATVIIADCCEHNADTRI
LDMLRLHTLRSSHGDDVLPDARIGRFRIPLDGSKYGKLETAVEAEKHGRA
MDMCSINPLYLGLKYRYVYACGAKRPCNFPNALTKVDIVEKEVKIWHEHG
IIPSEPFFVPRPGATHEDDGVVISIVSEENGGSYAILLDGSSFEEIARAK
FPYGLPYGLHGCWIPKH.
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mRNA from alignment at C1:3251491..3254760-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00601H-R ID=BolC1t00601H-R|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=mRNA|length=3270bp|location=Sequence derived from alignment at C1:3251491..3254760- (Brassica oleracea HDEM)
ATGGCTTCGTTGATCACAGCCAAAGCAATTATGAGTCATCATCATGTTTT GTCCTCAACTAGAATCACTACACTTTGTTCCGACAAAGCCATCGACAACC AACAAAGAAAAACAAAACTCCAAATCTCTCACCGATTTTTCTCCCGCCGA ACAATATCTGCAGCTGTAATCAACTCAGCGTCGCCTGTGCCGAAGAAAGA GACGGTGGAAGATGAGAGACGGTGTCATGTTGCGTGGACAAGTGTACAAC AAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAAGATCCCCACTTGG CTGGTTTGTCTTTTATCGTCATATTATATCCTCCAAATATATTTTAGCTA TATTCGTTGAATTTCATACAAATATGTATCGTGCACACAATACACACTCA CACTGGCACATGAATATGTATATATTACAAGACAAAACTATTTTTTCTTC TATATAATTGCATGTAAATTTATTTATATTCTGTATAATCTTATAGTACA TGATTTCATTACTAAGAAGTCTAAAGGATTAGATTAATCAATATGTTTGA ATAGATATATTACGGTGCTAAGGCATATGGTTGGTAGTTGGTACACGTCT ACGAGCGATACTCGTGACCATTGTTGCAATCTATAAACAGCGTACATTCA GTCATGTTCCAAGTTAGACACCAACAAGTAACAATGTGTTAGCAAAAACT TGTAATATAATCAATATATTTATATTTATACATAACTAACGTCGACTTTT GTATATATTTAATTTGACATAAAGCGTTCAGAATCTTTTCCTTTTTAGTT CTTATAAATCAGATAACAGTTATAAAACTGCATATAAAACAAACGATTAA ACATTTTTCTAAACAATATTGTAAAAATGAGACAATTAATGATTATAAGG TAACATGCAGAATGGTACGTATCTAAGAAACGGACCGGGCCTATGGAACA TCGGAGACCACGACTTCCGACATCTCTTCGACGGCTACTCCACACTAGTC AAGCTCGAATTCGACGACGGTCGTATATTCTCCGGCCACCGTCTCCTCGA ATCCAACGCCTACAAAGCCGCCAAGAAACACAAGAAGCTCTGTTACCGCG AATTCTCCGAGACTCCAAAACCGTCGAGAAGCAACTTCAAGAACCCTTTC TCCGGGGTCGGAGAGATCGTCAAACTATTCTCCGGCGAGTCTTTAACGGA CAACGCCAACACCGGAGTGATCCGTCTCGGTGACGGACGTGTCATGTGCC TCACGGAGACTCAAAAAGGATCGATTCTTGTCGACCATGATACGTTAGAC ACGATAGGGAAGTTCAAATACGACGACGGTTTGTGCGATCACATGATCCA CTCGGCGCATCCCATCGTGACAGAGACGGAGATGTGGACGTTGATACCTG ATCTTGTTAAGCCTGGTTACCGGGTCGTGAGGATGGAGGCCGGGTCGAAT AAAAGGGAGGTTGTGGGGCGGGTTAAATGTCGGTCCGGGTCGTGGGGACC CGGGTGGGTTCACTCGTTTGCGGTGACGGAGAATTATGTTTTGATACCGG AAATGCCCCTGAGGTATTCGGTGAGGAATCTGCTTAGAGCTGAGCCGACG CCGCTTTACAAGTTTGAGTGGTGTCCTAACGACGGAGCTTTTGTTCATGT CATGTCCAAACTCACTGGAGAAATCGTAAGTGAACGTTTTAATAAGTCAA TGGATTGTTTTCTTACTTTTTTTTTTTCATTCAGTTTTGGATTATGTTGG TTATAGTACATATTTAGTTAAGTTCAATCAAAAAGATAGTGTTCATGTTT ACTTAATCCTCCATTATTGGTATGTGGTATGTGGTAAGTGGCGTAACATG TACGGTTGCTTGATGTCATAATGTGCATATATAATCAGAGTCACGATTTT AGGGAAACATTGATGTATGGATATTAGTTAATATATGCAATGTTGTTCTA TATTACTAAGCCAACTTTCAACGATCACTTTTGCCTTAGACTAGAAAATC TTTTAGGTTTTACATGTGTTTAAGTGATACATATCATCTAAAAGGTCTTT TTTTCTTCCATCTCTTTATACTATAGCCAGGATTTTAGAATTTAGAGTGA GATCAAAGGGCTATTATTGGAGAGAAACCTATTAGAACGTTTAAACGTTA TTGATTTACTTCAGAAAACCAATAGAAATACATGTGATACAATTGATTTT TTATATTTATTTTCATTTTAAACATGAAAGTAAAGCATAATATTAATATG ATATTCATTCGTGACCTAGGTGGCAAGCGTGGAGGTCCCTGCATACTTAA CGTTTCACTTCATAAACGCATACGAAGAAGATGAAAATGGAGACGGGAAA GCGACGGTCATCATTGCAGATTGTTGCGAACACAACGCAGATACGCGGAT ACTCGATATGCTCCGTCTCCACACATTACGTTCCTCACATGGTGACGACG TCTTACCCGACGCTAGGTATATATGCGTCAACTTTTTGATTACCATACCT ACATTTTTACTTTTGATAATAGCTGAATATGTTGATGTAATCTTATGCAT TATTAACATATATATACATGTGTTTAGGATTGGAAGATTCAGGATACCGT TGGATGGAAGCAAGTACGGGAAACTGGAGACGGCAGTGGAGGCGGAGAAG CATGGGAGGGCGATGGATATGTGCAGCATCAACCCTTTGTATTTGGGTCT AAAGTATCGTTACGTTTATGCGTGTGGTGCTAAAAGACCTTGTAACTTCC CCAATGCCCTCACCAAGGTAACCTATATGCATAGACTATAGCAAAACAAG TTTTTACTGATATTCTTCAAGTTTTATATGGTGTTAGCGATATGGTCTTT TTGTTATATATATGCGTTGTTGATCAAGATTTGTGAGTAGTAACTAAAAG CATCTTCATCTCTTAAATAACATATTAGCTATTGTATGAGACAGGTTGAT ATTGTGGAGAAGGAAGTGAAGATCTGGCACGAACATGGCATTATACCATC CGAGCCATTCTTTGTGCCTCGTCCAGGCGCAACCCATGAAGATGATGGTT AGTTCAAAATACATAGGTTTCGTTGTCTTTCTTTGATATTTTTTTTTTCT AATATGGGTTTTGTGTTGTGAAAGGAGTGGTGATATCGATAGTAAGTGAA GAAAATGGAGGAAGCTATGCGATATTGCTTGATGGAAGCTCCTTTGAAGA AATAGCAAGAGCCAAGTTTCCTTATGGTCTTCCTTATGGCTTACATGGTT GCTGGATCCCCAAGCACTGA
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Coding sequence (CDS) from alignment at C1:3251491..3254760-

>BolC1t00601H-R ID=BolC1t00601H-R|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=CDS|length=1704bp|location=Sequence derived from alignment at C1:3251491..3254760- (Brassica oleracea HDEM)
ATGGCTTCGTTGATCACAGCCAAAGCAATTATGAGTCATCATCATGTTTT
GTCCTCAACTAGAATCACTACACTTTGTTCCGACAAAGCCATCGACAACC
AACAAAGAAAAACAAAACTCCAAATCTCTCACCGATTTTTCTCCCGCCGA
ACAATATCTGCAGCTGTAATCAACTCAGCGTCGCCTGTGCCGAAGAAAGA
GACGGTGGAAGATGAGAGACGGTGTCATGTTGCGTGGACAAGTGTACAAC
AAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAAGATCCCCACTTGG
CTGAATGGTACGTATCTAAGAAACGGACCGGGCCTATGGAACATCGGAGA
CCACGACTTCCGACATCTCTTCGACGGCTACTCCACACTAGTCAAGCTCG
AATTCGACGACGGTCGTATATTCTCCGGCCACCGTCTCCTCGAATCCAAC
GCCTACAAAGCCGCCAAGAAACACAAGAAGCTCTGTTACCGCGAATTCTC
CGAGACTCCAAAACCGTCGAGAAGCAACTTCAAGAACCCTTTCTCCGGGG
TCGGAGAGATCGTCAAACTATTCTCCGGCGAGTCTTTAACGGACAACGCC
AACACCGGAGTGATCCGTCTCGGTGACGGACGTGTCATGTGCCTCACGGA
GACTCAAAAAGGATCGATTCTTGTCGACCATGATACGTTAGACACGATAG
GGAAGTTCAAATACGACGACGGTTTGTGCGATCACATGATCCACTCGGCG
CATCCCATCGTGACAGAGACGGAGATGTGGACGTTGATACCTGATCTTGT
TAAGCCTGGTTACCGGGTCGTGAGGATGGAGGCCGGGTCGAATAAAAGGG
AGGTTGTGGGGCGGGTTAAATGTCGGTCCGGGTCGTGGGGACCCGGGTGG
GTTCACTCGTTTGCGGTGACGGAGAATTATGTTTTGATACCGGAAATGCC
CCTGAGGTATTCGGTGAGGAATCTGCTTAGAGCTGAGCCGACGCCGCTTT
ACAAGTTTGAGTGGTGTCCTAACGACGGAGCTTTTGTTCATGTCATGTCC
AAACTCACTGGAGAAATCGTGGCAAGCGTGGAGGTCCCTGCATACTTAAC
GTTTCACTTCATAAACGCATACGAAGAAGATGAAAATGGAGACGGGAAAG
CGACGGTCATCATTGCAGATTGTTGCGAACACAACGCAGATACGCGGATA
CTCGATATGCTCCGTCTCCACACATTACGTTCCTCACATGGTGACGACGT
CTTACCCGACGCTAGGATTGGAAGATTCAGGATACCGTTGGATGGAAGCA
AGTACGGGAAACTGGAGACGGCAGTGGAGGCGGAGAAGCATGGGAGGGCG
ATGGATATGTGCAGCATCAACCCTTTGTATTTGGGTCTAAAGTATCGTTA
CGTTTATGCGTGTGGTGCTAAAAGACCTTGTAACTTCCCCAATGCCCTCA
CCAAGGTTGATATTGTGGAGAAGGAAGTGAAGATCTGGCACGAACATGGC
ATTATACCATCCGAGCCATTCTTTGTGCCTCGTCCAGGCGCAACCCATGA
AGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCT
ATGCGATATTGCTTGATGGAAGCTCCTTTGAAGAAATAGCAAGAGCCAAG
TTTCCTTATGGTCTTCCTTATGGCTTACATGGTTGCTGGATCCCCAAGCA
CTGA
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