BolC1t00601H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00601H-R
Unique Name	BolC1t00601H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:3251491..3254760 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1704

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00601H	BolC1t00601H	Brassica oleracea HDEM	gene	C1 3251491..3254760 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00601H-R	BolC1t00601H-R-P	Brassica oleracea HDEM	polypeptide	C1 3251491..3254760 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00601H_exon1	BolC1t00601H_exon1	Brassica oleracea HDEM	exon	C1 3251491..3251636 -
BolC1t00601H_exon2	BolC1t00601H_exon2	Brassica oleracea HDEM	exon	C1 3251714..3251816 -
BolC1t00601H_exon3	BolC1t00601H_exon3	Brassica oleracea HDEM	exon	C1 3251994..3252183 -
BolC1t00601H_exon4	BolC1t00601H_exon4	Brassica oleracea HDEM	exon	C1 3252295..3252491 -
BolC1t00601H_exon5	BolC1t00601H_exon5	Brassica oleracea HDEM	exon	C1 3253086..3253850 -
BolC1t00601H_exon6	BolC1t00601H_exon6	Brassica oleracea HDEM	exon	C1 3254458..3254760 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00601H	BolC1t00601H	Brassica oleracea HDEM	CDS	C1 3251491..3251636 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:3251491..3254760-
coding sequence from alignment at C1:3251491..3254760-

spliced messenger RNA

>BolC1t00601H-R ID=BolC1t00601H-R|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1704bp|location=Sequence derived from alignment at C1:3251491..3254760- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGTTGATCACAGCCAAAGCAATTATGAGTCATCATCATGTTTT
GTCCTCAACTAGAATCACTACACTTTGTTCCGACAAAGCCATCGACAACC
AACAAAGAAAAACAAAACTCCAAATCTCTCACCGATTTTTCTCCCGCCGA
ACAATATCTGCAGCTGTAATCAACTCAGCGTCGCCTGTGCCGAAGAAAGA
GACGGTGGAAGATGAGAGACGGTGTCATGTTGCGTGGACAAGTGTACAAC
AAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAAGATCCCCACTTGG
CTGAATGGTACGTATCTAAGAAACGGACCGGGCCTATGGAACATCGGAGA
CCACGACTTCCGACATCTCTTCGACGGCTACTCCACACTAGTCAAGCTCG
AATTCGACGACGGTCGTATATTCTCCGGCCACCGTCTCCTCGAATCCAAC
GCCTACAAAGCCGCCAAGAAACACAAGAAGCTCTGTTACCGCGAATTCTC
CGAGACTCCAAAACCGTCGAGAAGCAACTTCAAGAACCCTTTCTCCGGGG
TCGGAGAGATCGTCAAACTATTCTCCGGCGAGTCTTTAACGGACAACGCC
AACACCGGAGTGATCCGTCTCGGTGACGGACGTGTCATGTGCCTCACGGA
GACTCAAAAAGGATCGATTCTTGTCGACCATGATACGTTAGACACGATAG
GGAAGTTCAAATACGACGACGGTTTGTGCGATCACATGATCCACTCGGCG
CATCCCATCGTGACAGAGACGGAGATGTGGACGTTGATACCTGATCTTGT
TAAGCCTGGTTACCGGGTCGTGAGGATGGAGGCCGGGTCGAATAAAAGGG
AGGTTGTGGGGCGGGTTAAATGTCGGTCCGGGTCGTGGGGACCCGGGTGG
GTTCACTCGTTTGCGGTGACGGAGAATTATGTTTTGATACCGGAAATGCC
CCTGAGGTATTCGGTGAGGAATCTGCTTAGAGCTGAGCCGACGCCGCTTT
ACAAGTTTGAGTGGTGTCCTAACGACGGAGCTTTTGTTCATGTCATGTCC
AAACTCACTGGAGAAATCGTGGCAAGCGTGGAGGTCCCTGCATACTTAAC
GTTTCACTTCATAAACGCATACGAAGAAGATGAAAATGGAGACGGGAAAG
CGACGGTCATCATTGCAGATTGTTGCGAACACAACGCAGATACGCGGATA
CTCGATATGCTCCGTCTCCACACATTACGTTCCTCACATGGTGACGACGT
CTTACCCGACGCTAGGATTGGAAGATTCAGGATACCGTTGGATGGAAGCA
AGTACGGGAAACTGGAGACGGCAGTGGAGGCGGAGAAGCATGGGAGGGCG
ATGGATATGTGCAGCATCAACCCTTTGTATTTGGGTCTAAAGTATCGTTA
CGTTTATGCGTGTGGTGCTAAAAGACCTTGTAACTTCCCCAATGCCCTCA
CCAAGGTTGATATTGTGGAGAAGGAAGTGAAGATCTGGCACGAACATGGC
ATTATACCATCCGAGCCATTCTTTGTGCCTCGTCCAGGCGCAACCCATGA
AGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCT
ATGCGATATTGCTTGATGGAAGCTCCTTTGAAGAAATAGCAAGAGCCAAG
TTTCCTTATGGTCTTCCTTATGGCTTACATGGTTGCTGGATCCCCAAGCA
CTGA

protein sequence of BolC1t00601H-R

>BolC1t00601H-R-P ID=BolC1t00601H-R-P|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=568bp
MASLITAKAIMSHHHVLSSTRITTLCSDKAIDNQQRKTKLQISHRFFSRR
TISAAVINSASPVPKKETVEDERRCHVAWTSVQQEKWEGELTVQGKIPTW
LNGTYLRNGPGLWNIGDHDFRHLFDGYSTLVKLEFDDGRIFSGHRLLESN
AYKAAKKHKKLCYREFSETPKPSRSNFKNPFSGVGEIVKLFSGESLTDNA
NTGVIRLGDGRVMCLTETQKGSILVDHDTLDTIGKFKYDDGLCDHMIHSA
HPIVTETEMWTLIPDLVKPGYRVVRMEAGSNKREVVGRVKCRSGSWGPGW
VHSFAVTENYVLIPEMPLRYSVRNLLRAEPTPLYKFEWCPNDGAFVHVMS
KLTGEIVASVEVPAYLTFHFINAYEEDENGDGKATVIIADCCEHNADTRI
LDMLRLHTLRSSHGDDVLPDARIGRFRIPLDGSKYGKLETAVEAEKHGRA
MDMCSINPLYLGLKYRYVYACGAKRPCNFPNALTKVDIVEKEVKIWHEHG
IIPSEPFFVPRPGATHEDDGVVISIVSEENGGSYAILLDGSSFEEIARAK
FPYGLPYGLHGCWIPKH.

mRNA from alignment at C1:3251491..3254760-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00601H-R ID=BolC1t00601H-R|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=mRNA|length=3270bp|location=Sequence derived from alignment at C1:3251491..3254760- (Brassica oleracea HDEM)
ATGGCTTCGTTGATCACAGCCAAAGCAATTATGAGTCATCATCATGTTTT
GTCCTCAACTAGAATCACTACACTTTGTTCCGACAAAGCCATCGACAACC
AACAAAGAAAAACAAAACTCCAAATCTCTCACCGATTTTTCTCCCGCCGA
ACAATATCTGCAGCTGTAATCAACTCAGCGTCGCCTGTGCCGAAGAAAGA
GACGGTGGAAGATGAGAGACGGTGTCATGTTGCGTGGACAAGTGTACAAC
AAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAAGATCCCCACTTGG
CTGGTTTGTCTTTTATCGTCATATTATATCCTCCAAATATATTTTAGCTA
TATTCGTTGAATTTCATACAAATATGTATCGTGCACACAATACACACTCA
CACTGGCACATGAATATGTATATATTACAAGACAAAACTATTTTTTCTTC
TATATAATTGCATGTAAATTTATTTATATTCTGTATAATCTTATAGTACA
TGATTTCATTACTAAGAAGTCTAAAGGATTAGATTAATCAATATGTTTGA
ATAGATATATTACGGTGCTAAGGCATATGGTTGGTAGTTGGTACACGTCT
ACGAGCGATACTCGTGACCATTGTTGCAATCTATAAACAGCGTACATTCA
GTCATGTTCCAAGTTAGACACCAACAAGTAACAATGTGTTAGCAAAAACT
TGTAATATAATCAATATATTTATATTTATACATAACTAACGTCGACTTTT
GTATATATTTAATTTGACATAAAGCGTTCAGAATCTTTTCCTTTTTAGTT
CTTATAAATCAGATAACAGTTATAAAACTGCATATAAAACAAACGATTAA
ACATTTTTCTAAACAATATTGTAAAAATGAGACAATTAATGATTATAAGG
TAACATGCAGAATGGTACGTATCTAAGAAACGGACCGGGCCTATGGAACA
TCGGAGACCACGACTTCCGACATCTCTTCGACGGCTACTCCACACTAGTC
AAGCTCGAATTCGACGACGGTCGTATATTCTCCGGCCACCGTCTCCTCGA
ATCCAACGCCTACAAAGCCGCCAAGAAACACAAGAAGCTCTGTTACCGCG
AATTCTCCGAGACTCCAAAACCGTCGAGAAGCAACTTCAAGAACCCTTTC
TCCGGGGTCGGAGAGATCGTCAAACTATTCTCCGGCGAGTCTTTAACGGA
CAACGCCAACACCGGAGTGATCCGTCTCGGTGACGGACGTGTCATGTGCC
TCACGGAGACTCAAAAAGGATCGATTCTTGTCGACCATGATACGTTAGAC
ACGATAGGGAAGTTCAAATACGACGACGGTTTGTGCGATCACATGATCCA
CTCGGCGCATCCCATCGTGACAGAGACGGAGATGTGGACGTTGATACCTG
ATCTTGTTAAGCCTGGTTACCGGGTCGTGAGGATGGAGGCCGGGTCGAAT
AAAAGGGAGGTTGTGGGGCGGGTTAAATGTCGGTCCGGGTCGTGGGGACC
CGGGTGGGTTCACTCGTTTGCGGTGACGGAGAATTATGTTTTGATACCGG
AAATGCCCCTGAGGTATTCGGTGAGGAATCTGCTTAGAGCTGAGCCGACG
CCGCTTTACAAGTTTGAGTGGTGTCCTAACGACGGAGCTTTTGTTCATGT
CATGTCCAAACTCACTGGAGAAATCGTAAGTGAACGTTTTAATAAGTCAA
TGGATTGTTTTCTTACTTTTTTTTTTTCATTCAGTTTTGGATTATGTTGG
TTATAGTACATATTTAGTTAAGTTCAATCAAAAAGATAGTGTTCATGTTT
ACTTAATCCTCCATTATTGGTATGTGGTATGTGGTAAGTGGCGTAACATG
TACGGTTGCTTGATGTCATAATGTGCATATATAATCAGAGTCACGATTTT
AGGGAAACATTGATGTATGGATATTAGTTAATATATGCAATGTTGTTCTA
TATTACTAAGCCAACTTTCAACGATCACTTTTGCCTTAGACTAGAAAATC
TTTTAGGTTTTACATGTGTTTAAGTGATACATATCATCTAAAAGGTCTTT
TTTTCTTCCATCTCTTTATACTATAGCCAGGATTTTAGAATTTAGAGTGA
GATCAAAGGGCTATTATTGGAGAGAAACCTATTAGAACGTTTAAACGTTA
TTGATTTACTTCAGAAAACCAATAGAAATACATGTGATACAATTGATTTT
TTATATTTATTTTCATTTTAAACATGAAAGTAAAGCATAATATTAATATG
ATATTCATTCGTGACCTAGGTGGCAAGCGTGGAGGTCCCTGCATACTTAA
CGTTTCACTTCATAAACGCATACGAAGAAGATGAAAATGGAGACGGGAAA
GCGACGGTCATCATTGCAGATTGTTGCGAACACAACGCAGATACGCGGAT
ACTCGATATGCTCCGTCTCCACACATTACGTTCCTCACATGGTGACGACG
TCTTACCCGACGCTAGGTATATATGCGTCAACTTTTTGATTACCATACCT
ACATTTTTACTTTTGATAATAGCTGAATATGTTGATGTAATCTTATGCAT
TATTAACATATATATACATGTGTTTAGGATTGGAAGATTCAGGATACCGT
TGGATGGAAGCAAGTACGGGAAACTGGAGACGGCAGTGGAGGCGGAGAAG
CATGGGAGGGCGATGGATATGTGCAGCATCAACCCTTTGTATTTGGGTCT
AAAGTATCGTTACGTTTATGCGTGTGGTGCTAAAAGACCTTGTAACTTCC
CCAATGCCCTCACCAAGGTAACCTATATGCATAGACTATAGCAAAACAAG
TTTTTACTGATATTCTTCAAGTTTTATATGGTGTTAGCGATATGGTCTTT
TTGTTATATATATGCGTTGTTGATCAAGATTTGTGAGTAGTAACTAAAAG
CATCTTCATCTCTTAAATAACATATTAGCTATTGTATGAGACAGGTTGAT
ATTGTGGAGAAGGAAGTGAAGATCTGGCACGAACATGGCATTATACCATC
CGAGCCATTCTTTGTGCCTCGTCCAGGCGCAACCCATGAAGATGATGGTT
AGTTCAAAATACATAGGTTTCGTTGTCTTTCTTTGATATTTTTTTTTTCT
AATATGGGTTTTGTGTTGTGAAAGGAGTGGTGATATCGATAGTAAGTGAA
GAAAATGGAGGAAGCTATGCGATATTGCTTGATGGAAGCTCCTTTGAAGA
AATAGCAAGAGCCAAGTTTCCTTATGGTCTTCCTTATGGCTTACATGGTT
GCTGGATCCCCAAGCACTGA

Coding sequence (CDS) from alignment at C1:3251491..3254760-

>BolC1t00601H-R ID=BolC1t00601H-R|Name=BolC1t00601H-R|organism=Brassica oleracea HDEM|type=CDS|length=1704bp|location=Sequence derived from alignment at C1:3251491..3254760- (Brassica oleracea HDEM)
ATGGCTTCGTTGATCACAGCCAAAGCAATTATGAGTCATCATCATGTTTT
GTCCTCAACTAGAATCACTACACTTTGTTCCGACAAAGCCATCGACAACC
AACAAAGAAAAACAAAACTCCAAATCTCTCACCGATTTTTCTCCCGCCGA
ACAATATCTGCAGCTGTAATCAACTCAGCGTCGCCTGTGCCGAAGAAAGA
GACGGTGGAAGATGAGAGACGGTGTCATGTTGCGTGGACAAGTGTACAAC
AAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAAGATCCCCACTTGG
CTGAATGGTACGTATCTAAGAAACGGACCGGGCCTATGGAACATCGGAGA
CCACGACTTCCGACATCTCTTCGACGGCTACTCCACACTAGTCAAGCTCG
AATTCGACGACGGTCGTATATTCTCCGGCCACCGTCTCCTCGAATCCAAC
GCCTACAAAGCCGCCAAGAAACACAAGAAGCTCTGTTACCGCGAATTCTC
CGAGACTCCAAAACCGTCGAGAAGCAACTTCAAGAACCCTTTCTCCGGGG
TCGGAGAGATCGTCAAACTATTCTCCGGCGAGTCTTTAACGGACAACGCC
AACACCGGAGTGATCCGTCTCGGTGACGGACGTGTCATGTGCCTCACGGA
GACTCAAAAAGGATCGATTCTTGTCGACCATGATACGTTAGACACGATAG
GGAAGTTCAAATACGACGACGGTTTGTGCGATCACATGATCCACTCGGCG
CATCCCATCGTGACAGAGACGGAGATGTGGACGTTGATACCTGATCTTGT
TAAGCCTGGTTACCGGGTCGTGAGGATGGAGGCCGGGTCGAATAAAAGGG
AGGTTGTGGGGCGGGTTAAATGTCGGTCCGGGTCGTGGGGACCCGGGTGG
GTTCACTCGTTTGCGGTGACGGAGAATTATGTTTTGATACCGGAAATGCC
CCTGAGGTATTCGGTGAGGAATCTGCTTAGAGCTGAGCCGACGCCGCTTT
ACAAGTTTGAGTGGTGTCCTAACGACGGAGCTTTTGTTCATGTCATGTCC
AAACTCACTGGAGAAATCGTGGCAAGCGTGGAGGTCCCTGCATACTTAAC
GTTTCACTTCATAAACGCATACGAAGAAGATGAAAATGGAGACGGGAAAG
CGACGGTCATCATTGCAGATTGTTGCGAACACAACGCAGATACGCGGATA
CTCGATATGCTCCGTCTCCACACATTACGTTCCTCACATGGTGACGACGT
CTTACCCGACGCTAGGATTGGAAGATTCAGGATACCGTTGGATGGAAGCA
AGTACGGGAAACTGGAGACGGCAGTGGAGGCGGAGAAGCATGGGAGGGCG
ATGGATATGTGCAGCATCAACCCTTTGTATTTGGGTCTAAAGTATCGTTA
CGTTTATGCGTGTGGTGCTAAAAGACCTTGTAACTTCCCCAATGCCCTCA
CCAAGGTTGATATTGTGGAGAAGGAAGTGAAGATCTGGCACGAACATGGC
ATTATACCATCCGAGCCATTCTTTGTGCCTCGTCCAGGCGCAACCCATGA
AGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCT
ATGCGATATTGCTTGATGGAAGCTCCTTTGAAGAAATAGCAAGAGCCAAG
TTTCCTTATGGTCTTCCTTATGGCTTACATGGTTGCTGGATCCCCAAGCA
CTGA

Orthology

View orthology data for BolC1t00601H-R