BolC1t00315H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00315H-R
Unique NameBolC1t00315H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:1726209..1727974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size1068
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00315HBolC1t00315HBrassica oleracea HDEMgeneC1 1726209..1727974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00315H-RBolC1t00315H-R-PBrassica oleracea HDEMpolypeptideC1 1726209..1727974 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00315H_exon1BolC1t00315H_exon1Brassica oleracea HDEMexonC1 1726209..1726307 +
BolC1t00315H_exon2BolC1t00315H_exon2Brassica oleracea HDEMexonC1 1726379..1726610 +
BolC1t00315H_exon3BolC1t00315H_exon3Brassica oleracea HDEMexonC1 1726846..1727102 +
BolC1t00315H_exon4BolC1t00315H_exon4Brassica oleracea HDEMexonC1 1727180..1727292 +
BolC1t00315H_exon5BolC1t00315H_exon5Brassica oleracea HDEMexonC1 1727435..1727582 +
BolC1t00315H_exon6BolC1t00315H_exon6Brassica oleracea HDEMexonC1 1727678..1727815 +
BolC1t00315H_exon7BolC1t00315H_exon7Brassica oleracea HDEMexonC1 1727894..1727974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00315HBolC1t00315HBrassica oleracea HDEMCDSC1 1726209..1726307 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1068bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TCTCTCGCCGGAGATTCCCGATCAAATGCTCGTCGTCTGAGCCGGAAGAT
GGTGTGGATTCGGTATCTATTAACAGTTCGACGTACAGCTGGTTCACCGG
ACTCGGCGGTATCGGGATGTTAGACACCGCGTATTTAACCTACCTGAAAC
TGACCGGATCCGATGCCTTTTGCCCCGTTGGTGGTGGTACTTGCGGCGAT
GTCTTGAACAGCGATTACGCCGTTGTTTTTGGTGTTCCTCTGCCAGTGAT
TGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGCTTGCGG
AAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTTGCGTTA
TTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCTGTATAT
ACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAGTGTCTG
TTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGATGTGAAGATG
CAAGAGATACAGCAAGTTGTAGGATTGCAGATATGCTTGGCACTCATAGT
AGTTGCCTCCTTGACTGCTTCATATAGTACTGCTCAACCAATCCCTTCAA
GCTCAGGTGACATTGAACTGCCATATTATTCAACAGAGATCACTACATCA
TCGAGTCCCTATGCTATTGCTCTAGCAAAACATCTAAACTCCGTTGGAGC
TAAAATGTATGGAGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGA
TGTTTGGAAGAGAAGCTGCAAAGCTACTGAATTACGTGGAATGTTTTCCC
GAAGGGTACAAGAAAGGAACTAAGATATACAAGGCATGTTCAGATGTTGG
GATCGAAGGTTTCCCGACATGGATGATAAATGGTCAAGTATTAAGCGGAG
AAGTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAG
GCCAAACCACTTCAGTAA
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protein sequence of BolC1t00315H-R

>BolC1t00315H-R-P ID=BolC1t00315H-R-P|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=356bp
MMARFIPVSSCQFRFGLRELPPSSLALNPRRFEVSRRRFPIKCSSSEPED
GVDSVSINSSTYSWFTGLGGIGMLDTAYLTYLKLTGSDAFCPVGGGTCGD
VLNSDYAVVFGVPLPVIGFVMYGLVTALSAQLAEGNLPFGVSKTNGRFAL
FAATTTMASASAYFLYILSTKLSGSSCLYCLVSVFLSFTLFFLALKDVKM
QEIQQVVGLQICLALIVVASLTASYSTAQPIPSSSGDIELPYYSTEITTS
SSPYAIALAKHLNSVGAKMYGAFWCSHCLEQKEMFGREAAKLLNYVECFP
EGYKKGTKIYKACSDVGIEGFPTWMINGQVLSGEVELAELAEMSGFSLDQ
AKPLQ.
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mRNA from alignment at C1:1726209..1727974+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1766bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG TAAATCTCGTTTCATTTTCGTGTGTGATGGTAGTGTGATTGGTTAATTGA AGTCAGATGTTCTTAATCAGGTCTCTCGCCGGAGATTCCCGATCAAATGC TCGTCGTCTGAGCCGGAAGATGGTGTGGATTCGGTATCTATTAACAGTTC GACGTACAGCTGGTTCACCGGACTCGGCGGTATCGGGATGTTAGACACCG CGTATTTAACCTACCTGAAACTGACCGGATCCGATGCCTTTTGCCCCGTT GGTGGTGGTACTTGCGGCGATGTCTTGAACAGCGATTACGCCGTTGTTTT TGGTAACTATACATCGCTTTAGTGGTGATTAATGTATAGTCCTGAGTCTA GACTAACCTGGAAACATGTTTGTAGCTTAGTGCAAGATTTGTGTGTGTAG ATCTGTTGAAGTAGGTATTTTGATTAGATCCTGATTGAATAACTCAAATC TTGAATCTGTGCTATGAGCTGTGTCAATGAATATCATGCTCCATGTTGAA AGCTGAACTCAGTGACTGTTCTTTTGCATTTTCCCAGGTGTTCCTCTGCC AGTGATTGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGC TTGCGGAAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTT GCGTTATTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCT GTATATACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAG TGTCTGTTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGTATCC CTTTATATCCATTTCTCTTACATTTTGGGTAAGTTGTCAAGATGAGTTCT TAAGTTAGGTGCATGTGGTAGGATGTGAAGATGCAAGAGATACAGCAAGT TGTAGGATTGCAGATATGCTTGGCACTCATAGTAGTTGCCTCCTTGACTG CTTCATATAGTACTGCTCAACCAATCCCTTCAAGGTAATCTTGGTTCTTT GGAGTCCGATGGCATGTTTTAATCCTTTCTGACAAGTAATGAAAAATAGC TGTCCGAGGATGAATGAGTCAAATGAAGTGGTTTATCTTAACCCCAATAT ACGTCTTTTGTTTTCACTCCTTGCAGCTCAGGTGACATTGAACTGCCATA TTATTCAACAGAGATCACTACATCATCGAGTCCCTATGCTATTGCTCTAG CAAAACATCTAAACTCCGTTGGAGCTAAAATGTATGGAGCATTCTGGTGT TCTCACTGCTTAGAGCAAAAAGAGGTAGGTACTACTAGGTATTTAATTCA TTATTGGTTTACGAGTAATCAGTTTCACGGATTTATCTTGTAACTATGTA AGTTTTCCTCTATCTATAGATGTTTGGAAGAGAAGCTGCAAAGCTACTGA ATTACGTGGAATGTTTTCCCGAAGGGTACAAGAAAGGAACTAAGATATAC AAGGCATGTTCAGATGTTGGGATCGAAGGTTTCCCGACATGGATGATAAA TGGTCAAGTGAGTGTAAATCCTCTGAATCCTTGGCACAAATTTTCATCAT ATGTCAGTTACTATTTCACCTCTTTTATTGTTTAGGTATTAAGCGGAGAA GTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAGGC CAAACCACTTCAGTAA
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Coding sequence (CDS) from alignment at C1:1726209..1727974+

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=CDS|length=1068bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TCTCTCGCCGGAGATTCCCGATCAAATGCTCGTCGTCTGAGCCGGAAGAT
GGTGTGGATTCGGTATCTATTAACAGTTCGACGTACAGCTGGTTCACCGG
ACTCGGCGGTATCGGGATGTTAGACACCGCGTATTTAACCTACCTGAAAC
TGACCGGATCCGATGCCTTTTGCCCCGTTGGTGGTGGTACTTGCGGCGAT
GTCTTGAACAGCGATTACGCCGTTGTTTTTGGTGTTCCTCTGCCAGTGAT
TGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGCTTGCGG
AAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTTGCGTTA
TTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCTGTATAT
ACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAGTGTCTG
TTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGATGTGAAGATG
CAAGAGATACAGCAAGTTGTAGGATTGCAGATATGCTTGGCACTCATAGT
AGTTGCCTCCTTGACTGCTTCATATAGTACTGCTCAACCAATCCCTTCAA
GCTCAGGTGACATTGAACTGCCATATTATTCAACAGAGATCACTACATCA
TCGAGTCCCTATGCTATTGCTCTAGCAAAACATCTAAACTCCGTTGGAGC
TAAAATGTATGGAGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGA
TGTTTGGAAGAGAAGCTGCAAAGCTACTGAATTACGTGGAATGTTTTCCC
GAAGGGTACAAGAAAGGAACTAAGATATACAAGGCATGTTCAGATGTTGG
GATCGAAGGTTTCCCGACATGGATGATAAATGGTCAAGTATTAAGCGGAG
AAGTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAG
GCCAAACCACTTCAGTAA
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