BolC1t00315H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00315H-R
Unique Name	BolC1t00315H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:1726209..1727974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1068

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00315H	BolC1t00315H	Brassica oleracea HDEM	gene	C1 1726209..1727974 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00315H-R	BolC1t00315H-R-P	Brassica oleracea HDEM	polypeptide	C1 1726209..1727974 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00315H_exon1	BolC1t00315H_exon1	Brassica oleracea HDEM	exon	C1 1726209..1726307 +
BolC1t00315H_exon2	BolC1t00315H_exon2	Brassica oleracea HDEM	exon	C1 1726379..1726610 +
BolC1t00315H_exon3	BolC1t00315H_exon3	Brassica oleracea HDEM	exon	C1 1726846..1727102 +
BolC1t00315H_exon4	BolC1t00315H_exon4	Brassica oleracea HDEM	exon	C1 1727180..1727292 +
BolC1t00315H_exon5	BolC1t00315H_exon5	Brassica oleracea HDEM	exon	C1 1727435..1727582 +
BolC1t00315H_exon6	BolC1t00315H_exon6	Brassica oleracea HDEM	exon	C1 1727678..1727815 +
BolC1t00315H_exon7	BolC1t00315H_exon7	Brassica oleracea HDEM	exon	C1 1727894..1727974 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00315H	BolC1t00315H	Brassica oleracea HDEM	CDS	C1 1726209..1726307 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:1726209..1727974+
coding sequence from alignment at C1:1726209..1727974+

spliced messenger RNA

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1068bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TCTCTCGCCGGAGATTCCCGATCAAATGCTCGTCGTCTGAGCCGGAAGAT
GGTGTGGATTCGGTATCTATTAACAGTTCGACGTACAGCTGGTTCACCGG
ACTCGGCGGTATCGGGATGTTAGACACCGCGTATTTAACCTACCTGAAAC
TGACCGGATCCGATGCCTTTTGCCCCGTTGGTGGTGGTACTTGCGGCGAT
GTCTTGAACAGCGATTACGCCGTTGTTTTTGGTGTTCCTCTGCCAGTGAT
TGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGCTTGCGG
AAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTTGCGTTA
TTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCTGTATAT
ACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAGTGTCTG
TTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGATGTGAAGATG
CAAGAGATACAGCAAGTTGTAGGATTGCAGATATGCTTGGCACTCATAGT
AGTTGCCTCCTTGACTGCTTCATATAGTACTGCTCAACCAATCCCTTCAA
GCTCAGGTGACATTGAACTGCCATATTATTCAACAGAGATCACTACATCA
TCGAGTCCCTATGCTATTGCTCTAGCAAAACATCTAAACTCCGTTGGAGC
TAAAATGTATGGAGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGA
TGTTTGGAAGAGAAGCTGCAAAGCTACTGAATTACGTGGAATGTTTTCCC
GAAGGGTACAAGAAAGGAACTAAGATATACAAGGCATGTTCAGATGTTGG
GATCGAAGGTTTCCCGACATGGATGATAAATGGTCAAGTATTAAGCGGAG
AAGTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAG
GCCAAACCACTTCAGTAA

protein sequence of BolC1t00315H-R

>BolC1t00315H-R-P ID=BolC1t00315H-R-P|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=356bp
MMARFIPVSSCQFRFGLRELPPSSLALNPRRFEVSRRRFPIKCSSSEPED
GVDSVSINSSTYSWFTGLGGIGMLDTAYLTYLKLTGSDAFCPVGGGTCGD
VLNSDYAVVFGVPLPVIGFVMYGLVTALSAQLAEGNLPFGVSKTNGRFAL
FAATTTMASASAYFLYILSTKLSGSSCLYCLVSVFLSFTLFFLALKDVKM
QEIQQVVGLQICLALIVVASLTASYSTAQPIPSSSGDIELPYYSTEITTS
SSPYAIALAKHLNSVGAKMYGAFWCSHCLEQKEMFGREAAKLLNYVECFP
EGYKKGTKIYKACSDVGIEGFPTWMINGQVLSGEVELAELAEMSGFSLDQ
AKPLQ.

mRNA from alignment at C1:1726209..1727974+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1766bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TAAATCTCGTTTCATTTTCGTGTGTGATGGTAGTGTGATTGGTTAATTGA
AGTCAGATGTTCTTAATCAGGTCTCTCGCCGGAGATTCCCGATCAAATGC
TCGTCGTCTGAGCCGGAAGATGGTGTGGATTCGGTATCTATTAACAGTTC
GACGTACAGCTGGTTCACCGGACTCGGCGGTATCGGGATGTTAGACACCG
CGTATTTAACCTACCTGAAACTGACCGGATCCGATGCCTTTTGCCCCGTT
GGTGGTGGTACTTGCGGCGATGTCTTGAACAGCGATTACGCCGTTGTTTT
TGGTAACTATACATCGCTTTAGTGGTGATTAATGTATAGTCCTGAGTCTA
GACTAACCTGGAAACATGTTTGTAGCTTAGTGCAAGATTTGTGTGTGTAG
ATCTGTTGAAGTAGGTATTTTGATTAGATCCTGATTGAATAACTCAAATC
TTGAATCTGTGCTATGAGCTGTGTCAATGAATATCATGCTCCATGTTGAA
AGCTGAACTCAGTGACTGTTCTTTTGCATTTTCCCAGGTGTTCCTCTGCC
AGTGATTGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGC
TTGCGGAAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTT
GCGTTATTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCT
GTATATACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAG
TGTCTGTTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGTATCC
CTTTATATCCATTTCTCTTACATTTTGGGTAAGTTGTCAAGATGAGTTCT
TAAGTTAGGTGCATGTGGTAGGATGTGAAGATGCAAGAGATACAGCAAGT
TGTAGGATTGCAGATATGCTTGGCACTCATAGTAGTTGCCTCCTTGACTG
CTTCATATAGTACTGCTCAACCAATCCCTTCAAGGTAATCTTGGTTCTTT
GGAGTCCGATGGCATGTTTTAATCCTTTCTGACAAGTAATGAAAAATAGC
TGTCCGAGGATGAATGAGTCAAATGAAGTGGTTTATCTTAACCCCAATAT
ACGTCTTTTGTTTTCACTCCTTGCAGCTCAGGTGACATTGAACTGCCATA
TTATTCAACAGAGATCACTACATCATCGAGTCCCTATGCTATTGCTCTAG
CAAAACATCTAAACTCCGTTGGAGCTAAAATGTATGGAGCATTCTGGTGT
TCTCACTGCTTAGAGCAAAAAGAGGTAGGTACTACTAGGTATTTAATTCA
TTATTGGTTTACGAGTAATCAGTTTCACGGATTTATCTTGTAACTATGTA
AGTTTTCCTCTATCTATAGATGTTTGGAAGAGAAGCTGCAAAGCTACTGA
ATTACGTGGAATGTTTTCCCGAAGGGTACAAGAAAGGAACTAAGATATAC
AAGGCATGTTCAGATGTTGGGATCGAAGGTTTCCCGACATGGATGATAAA
TGGTCAAGTGAGTGTAAATCCTCTGAATCCTTGGCACAAATTTTCATCAT
ATGTCAGTTACTATTTCACCTCTTTTATTGTTTAGGTATTAAGCGGAGAA
GTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAGGC
CAAACCACTTCAGTAA

Coding sequence (CDS) from alignment at C1:1726209..1727974+

>BolC1t00315H-R ID=BolC1t00315H-R|Name=BolC1t00315H-R|organism=Brassica oleracea HDEM|type=CDS|length=1068bp|location=Sequence derived from alignment at C1:1726209..1727974+ (Brassica oleracea HDEM)
ATGATGGCGAGGTTTATCCCTGTATCGTCTTGTCAGTTTCGTTTCGGCTT
ACGCGAGCTTCCTCCTTCGTCGTTGGCTCTCAATCCAAGACGGTTCGAGG
TCTCTCGCCGGAGATTCCCGATCAAATGCTCGTCGTCTGAGCCGGAAGAT
GGTGTGGATTCGGTATCTATTAACAGTTCGACGTACAGCTGGTTCACCGG
ACTCGGCGGTATCGGGATGTTAGACACCGCGTATTTAACCTACCTGAAAC
TGACCGGATCCGATGCCTTTTGCCCCGTTGGTGGTGGTACTTGCGGCGAT
GTCTTGAACAGCGATTACGCCGTTGTTTTTGGTGTTCCTCTGCCAGTGAT
TGGGTTTGTTATGTATGGCTTAGTAACAGCTTTGAGTGCACAGCTTGCGG
AAGGGAATCTACCCTTTGGAGTTAGTAAGACCAATGGGCGTTTTGCGTTA
TTTGCGGCCACAACTACGATGGCATCTGCTAGTGCGTACTTCCTGTATAT
ACTTAGCACAAAACTCTCAGGATCATCGTGCCTGTATTGTCTAGTGTCTG
TTTTCCTATCGTTTACTCTATTTTTCCTCGCTTTAAAGGATGTGAAGATG
CAAGAGATACAGCAAGTTGTAGGATTGCAGATATGCTTGGCACTCATAGT
AGTTGCCTCCTTGACTGCTTCATATAGTACTGCTCAACCAATCCCTTCAA
GCTCAGGTGACATTGAACTGCCATATTATTCAACAGAGATCACTACATCA
TCGAGTCCCTATGCTATTGCTCTAGCAAAACATCTAAACTCCGTTGGAGC
TAAAATGTATGGAGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGA
TGTTTGGAAGAGAAGCTGCAAAGCTACTGAATTACGTGGAATGTTTTCCC
GAAGGGTACAAGAAAGGAACTAAGATATACAAGGCATGTTCAGATGTTGG
GATCGAAGGTTTCCCGACATGGATGATAAATGGTCAAGTATTAAGCGGAG
AAGTAGAACTCGCTGAACTAGCGGAGATGTCTGGATTCAGCCTTGATCAG
GCCAAACCACTTCAGTAA

Orthology

View orthology data for BolC1t00315H-R