BolC1t00248H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00248H-R
Unique NameBolC1t00248H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:1346376..1347563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size585
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00248HBolC1t00248HBrassica oleracea HDEMgeneC1 1346376..1347563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00248H-RBolC1t00248H-R-PBrassica oleracea HDEMpolypeptideC1 1346376..1347563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00248H_exon1BolC1t00248H_exon1Brassica oleracea HDEMexonC1 1346376..1346464 +
BolC1t00248H_exon2BolC1t00248H_exon2Brassica oleracea HDEMexonC1 1346544..1346718 +
BolC1t00248H_exon3BolC1t00248H_exon3Brassica oleracea HDEMexonC1 1347149..1347289 +
BolC1t00248H_exon4BolC1t00248H_exon4Brassica oleracea HDEMexonC1 1347384..1347563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00248HBolC1t00248HBrassica oleracea HDEMCDSC1 1346376..1346464 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00248H-R ID=BolC1t00248H-R|Name=BolC1t00248H-R|organism=Brassica oleracea HDEM|type=mRNA|length=585bp|location=Sequence derived from alignment at C1:1346376..1347563+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGTCAGCTAGAATTGTCTTGTTCGGTGTCCACCATGTTCAGCAC
TATCCCTTGTTTCTGTAAAAGAGGTGATATCATTGTCGCCGACGAAGGTG
TTCACTGGGGGATACAAAATGGACTTCAGCTTTCGAGACGTACAATCGTG
TACTTCAAGCACAATGACATGGACTCTCTTCGTAGTACTTTGGAGAAAAT
CATGACAAAGAACAAGCGCTCAAAGAACTTGAGGCGTTACATTGTAGCTG
AAGCTGTATATCAGAACTCAGGCCAAATCGCGCCTCTTGATGAGATAGTG
AAACTAAAAGAGAAGTATCGTTTTCGTGTTATATTGGATGAAAGCAACTC
TTTGGGTGTGCTTGGCCGATCCGGGAGAGGTCTTTCAGAGCATCACGGTG
TCCCTATTGAGAAGATAGATGTTGTGACTGCAGCAATGGGCCACGCATTA
GCCACAGAAGGTGGGTTCTGCACTGGGAATGCCCGCATCATCGATTACCA
GAGACTTAGCAGCTCAGGATACGTGTTCTCGCGAGTGCTGCTATCACAGC
TATTGATGTCATTGATCAAAACCCTGAGTTGTTAG
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protein sequence of BolC1t00248H-R

>BolC1t00248H-R-P ID=BolC1t00248H-R-P|Name=BolC1t00248H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=195bp
MLRQLELSCSVSTMFSTIPCFCKRGDIIVADEGVHWGIQNGLQLSRRTIV
YFKHNDMDSLRSTLEKIMTKNKRSKNLRRYIVAEAVYQNSGQIAPLDEIV
KLKEKYRFRVILDESNSLGVLGRSGRGLSEHHGVPIEKIDVVTAAMGHAL
ATEGGFCTGNARIIDYQRLSSSGYVFSRVLLSQLLMSLIKTLSC.
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mRNA from alignment at C1:1346376..1347563+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00248H-R ID=BolC1t00248H-R|Name=BolC1t00248H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1188bp|location=Sequence derived from alignment at C1:1346376..1347563+ (Brassica oleracea HDEM)
ATGCTCCGTCAGCTAGAATTGTCTTGTTCGGTGTCCACCATGTTCAGCAC
TATCCCTTGTTTCTGTAAAAGAGGTGATATCATTGTCGCGTAAGTGTTAC
ACAAAACTTCTTTTAAAGCGTCTTCTTATCTGAACATTTGGGCTCATTCA
TTCTTGTTTCTCTCTTAGCGACGAAGGTGTTCACTGGGGGATACAAAATG
GACTTCAGCTTTCGAGACGTACAATCGTGTACTTCAAGCACAATGACATG
GACTCTCTTCGTAGTACTTTGGAGAAAATCATGACAAAGAACAAGCGCTC
AAAGAACTTGAGGCGTTACATTGTAGCTGAAGCTGTATATCAGGTATTGT
AAACACCTCTCTGTTTTTTTGTTTCTTCTCCTGCCATGAGTAGTAGACCT
GGGCAAAAAAACCAGAACCGAAACACCTAAGACCGGACCAAAACCCTCAT
AATGGTTCTTATATTTCTAAATCCAAAATAACTAAACCGAACGGGTACCC
AAATATTAAAAATATTAACTATATCTATGTATAACATAATATATGTTTAT
AATTTAAAATTAAAAGTATCTAAAAGTATTTGAAGATACTACCCGAAAGT
ATCCAAATATTTTTATCTGAAATATCCAAAGTAATCCAAAATATCTGAGT
TTTTTTATCCGAATCATCCTAATTATTTGATATATCAACCGAAATAACTG
AACTGATACCCGAAATGCCCATGCCTACCATTAGAAGTAACGTTTCCCCA
CTTGCTTGTGTTTTAATCTGCAGAACTCAGGCCAAATCGCGCCTCTTGAT
GAGATAGTGAAACTAAAAGAGAAGTATCGTTTTCGTGTTATATTGGATGA
AAGCAACTCTTTGGGTGTGCTTGGCCGATCCGGGAGAGGTCTTTCAGAGC
ATCACGGTGTCCCTGTGCGTAAGAACGACACACATTCTTAGAAGAGACTT
ATCATTTTGCTATTTATAACCAATGGTGATGATTTTTTTTGTCTCCTTGA
AACAACAGATTGAGAAGATAGATGTTGTGACTGCAGCAATGGGCCACGCA
TTAGCCACAGAAGGTGGGTTCTGCACTGGGAATGCCCGCATCATCGATTA
CCAGAGACTTAGCAGCTCAGGATACGTGTTCTCGCGAGTGCTGCTATCAC
AGCTATTGATGTCATTGATCAAAACCCTGAGTTGTTAG
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Coding sequence (CDS) from alignment at C1:1346376..1347563+

>BolC1t00248H-R ID=BolC1t00248H-R|Name=BolC1t00248H-R|organism=Brassica oleracea HDEM|type=CDS|length=585bp|location=Sequence derived from alignment at C1:1346376..1347563+ (Brassica oleracea HDEM)
ATGCTCCGTCAGCTAGAATTGTCTTGTTCGGTGTCCACCATGTTCAGCAC
TATCCCTTGTTTCTGTAAAAGAGGTGATATCATTGTCGCCGACGAAGGTG
TTCACTGGGGGATACAAAATGGACTTCAGCTTTCGAGACGTACAATCGTG
TACTTCAAGCACAATGACATGGACTCTCTTCGTAGTACTTTGGAGAAAAT
CATGACAAAGAACAAGCGCTCAAAGAACTTGAGGCGTTACATTGTAGCTG
AAGCTGTATATCAGAACTCAGGCCAAATCGCGCCTCTTGATGAGATAGTG
AAACTAAAAGAGAAGTATCGTTTTCGTGTTATATTGGATGAAAGCAACTC
TTTGGGTGTGCTTGGCCGATCCGGGAGAGGTCTTTCAGAGCATCACGGTG
TCCCTATTGAGAAGATAGATGTTGTGACTGCAGCAATGGGCCACGCATTA
GCCACAGAAGGTGGGTTCTGCACTGGGAATGCCCGCATCATCGATTACCA
GAGACTTAGCAGCTCAGGATACGTGTTCTCGCGAGTGCTGCTATCACAGC
TATTGATGTCATTGATCAAAACCCTGAGTTGTTAG
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