BolC1t00118H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00118H-R
Unique Name	BolC1t00118H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:563813..564541 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	729

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00118H	BolC1t00118H	Brassica oleracea HDEM	gene	C1 563813..564541 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00118H	BolC1t00118H	Brassica oleracea HDEM	CDS	C1 563813..564541 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00118H_exon1	BolC1t00118H_exon1	Brassica oleracea HDEM	exon	C1 563813..564541 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00118H-R	BolC1t00118H-R-P	Brassica oleracea HDEM	polypeptide	C1 563813..564541 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:563813..564541-
coding sequence from alignment at C1:563813..564541-

spliced messenger RNA

>BolC1t00118H-R ID=BolC1t00118H-R|Name=BolC1t00118H-R|organism=Brassica oleracea HDEM|type=mRNA|length=729bp|location=Sequence derived from alignment at C1:563813..564541- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACTTCGTCCCATCATAGCCACACCACCAGCTTCAACCCCCGGAG
GATCAAGACTAAGGCGAAGCCACCACATCAGATCAGTCACATGAGACCGT
CTCCGGCGGCTCAGCCGGTACTTAAATGTCCGAGGTGTGATTCCGTCAAC
ACCAAGTTCTGTTACTACAACAACTACAGCTTATCTCAGCCACGCCACTA
CTGCAAAAACTGTCGCCGTTACTGGACACGTGGCGGAACCCTACGTAACG
TCCCCATCGGTGGCTCAACCAGAAACAAGAACAAGCCTTCTAGCCTCCAA
GTCATCTCTTCTCCACCTCCGATTGTAGCGCCATTGTCGTCTCACGAGCT
CGTTGATGGGTTTCGTATGAACAGAGCGATGATAGACCCTTCTTCGACGG
CGTTTCAAGGTGGATTCTCCGGCTACATGTTTTCGTTGGATCCTAACTAC
AATCTTGCATCTTCTTCTATCGAGTCTTTGAGTTCTTTAAACCAAGATTT
GCACCAGAAGCTTCAGCAACAGAGACTCTTCACATCCATGTTTCAAAAAG
ATTCTCCACCGGTTATGTTTCATAACGTTGAGCTACTTCCTCCTTCGACG
GCGACAACGGAGTGGGCTTTCGATAGATCAGCCATTGGGGAAGCAACAAG
TGGCAGTAATGAAAACAATGGTGAACGTGAGGGTAATTTAGGAAGTTGGT
ACTATAATCCTAATAATTCTATGCCCTAG

protein sequence of BolC1t00118H-R

>BolC1t00118H-R-P ID=BolC1t00118H-R-P|Name=BolC1t00118H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=243bp
MMTSSHHSHTTSFNPRRIKTKAKPPHQISHMRPSPAAQPVLKCPRCDSVN
TKFCYYNNYSLSQPRHYCKNCRRYWTRGGTLRNVPIGGSTRNKNKPSSLQ
VISSPPPIVAPLSSHELVDGFRMNRAMIDPSSTAFQGGFSGYMFSLDPNY
NLASSSIESLSSLNQDLHQKLQQQRLFTSMFQKDSPPVMFHNVELLPPST
ATTEWAFDRSAIGEATSGSNENNGEREGNLGSWYYNPNNSMP.

mRNA from alignment at C1:563813..564541-

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00118H-R ID=BolC1t00118H-R|Name=BolC1t00118H-R|organism=Brassica oleracea HDEM|type=mRNA|length=729bp|location=Sequence derived from alignment at C1:563813..564541- (Brassica oleracea HDEM)
ATGATGACTTCGTCCCATCATAGCCACACCACCAGCTTCAACCCCCGGAG
GATCAAGACTAAGGCGAAGCCACCACATCAGATCAGTCACATGAGACCGT
CTCCGGCGGCTCAGCCGGTACTTAAATGTCCGAGGTGTGATTCCGTCAAC
ACCAAGTTCTGTTACTACAACAACTACAGCTTATCTCAGCCACGCCACTA
CTGCAAAAACTGTCGCCGTTACTGGACACGTGGCGGAACCCTACGTAACG
TCCCCATCGGTGGCTCAACCAGAAACAAGAACAAGCCTTCTAGCCTCCAA
GTCATCTCTTCTCCACCTCCGATTGTAGCGCCATTGTCGTCTCACGAGCT
CGTTGATGGGTTTCGTATGAACAGAGCGATGATAGACCCTTCTTCGACGG
CGTTTCAAGGTGGATTCTCCGGCTACATGTTTTCGTTGGATCCTAACTAC
AATCTTGCATCTTCTTCTATCGAGTCTTTGAGTTCTTTAAACCAAGATTT
GCACCAGAAGCTTCAGCAACAGAGACTCTTCACATCCATGTTTCAAAAAG
ATTCTCCACCGGTTATGTTTCATAACGTTGAGCTACTTCCTCCTTCGACG
GCGACAACGGAGTGGGCTTTCGATAGATCAGCCATTGGGGAAGCAACAAG
TGGCAGTAATGAAAACAATGGTGAACGTGAGGGTAATTTAGGAAGTTGGT
ACTATAATCCTAATAATTCTATGCCCTAG

Coding sequence (CDS) from alignment at C1:563813..564541-

>BolC1t00118H-R ID=BolC1t00118H-R|Name=BolC1t00118H-R|organism=Brassica oleracea HDEM|type=CDS|length=729bp|location=Sequence derived from alignment at C1:563813..564541- (Brassica oleracea HDEM)
ATGATGACTTCGTCCCATCATAGCCACACCACCAGCTTCAACCCCCGGAG
GATCAAGACTAAGGCGAAGCCACCACATCAGATCAGTCACATGAGACCGT
CTCCGGCGGCTCAGCCGGTACTTAAATGTCCGAGGTGTGATTCCGTCAAC
ACCAAGTTCTGTTACTACAACAACTACAGCTTATCTCAGCCACGCCACTA
CTGCAAAAACTGTCGCCGTTACTGGACACGTGGCGGAACCCTACGTAACG
TCCCCATCGGTGGCTCAACCAGAAACAAGAACAAGCCTTCTAGCCTCCAA
GTCATCTCTTCTCCACCTCCGATTGTAGCGCCATTGTCGTCTCACGAGCT
CGTTGATGGGTTTCGTATGAACAGAGCGATGATAGACCCTTCTTCGACGG
CGTTTCAAGGTGGATTCTCCGGCTACATGTTTTCGTTGGATCCTAACTAC
AATCTTGCATCTTCTTCTATCGAGTCTTTGAGTTCTTTAAACCAAGATTT
GCACCAGAAGCTTCAGCAACAGAGACTCTTCACATCCATGTTTCAAAAAG
ATTCTCCACCGGTTATGTTTCATAACGTTGAGCTACTTCCTCCTTCGACG
GCGACAACGGAGTGGGCTTTCGATAGATCAGCCATTGGGGAAGCAACAAG
TGGCAGTAATGAAAACAATGGTGAACGTGAGGGTAATTTAGGAAGTTGGT
ACTATAATCCTAATAATTCTATGCCCTAG

Orthology

View orthology data for BolC1t00118H-R