BolC1t00100H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00100H-R
Unique NameBolC1t00100H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:493046..494723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size555
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00100HBolC1t00100HBrassica oleracea HDEMgeneC1 493046..494723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00100H-RBolC1t00100H-R-PBrassica oleracea HDEMpolypeptideC1 493046..494723 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00100H_exon1BolC1t00100H_exon1Brassica oleracea HDEMexonC1 493046..493155 +
BolC1t00100H_exon2BolC1t00100H_exon2Brassica oleracea HDEMexonC1 494183..494381 +
BolC1t00100H_exon3BolC1t00100H_exon3Brassica oleracea HDEMexonC1 494478..494723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00100HBolC1t00100HBrassica oleracea HDEMCDSC1 493046..493155 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00100H-R ID=BolC1t00100H-R|Name=BolC1t00100H-R|organism=Brassica oleracea HDEM|type=mRNA|length=555bp|location=Sequence derived from alignment at C1:493046..494723+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGATCCTGCTTCTTCTTTGATTTTCTGCTTCCTTCCCACTCTCA
AATCACTGAAACATCACCAGATCAAACAAGTCAGAAGACTATAAAACTAA
CAGATATTGAATACAGAGCGGTTACGAGCGCATACTACAGAGGAGCAGTT
GGTGCGATGCTTGTTTATGATATTACCAAACGTGAGACCTTTGACCACAT
CCCTCGTTGGCTTGAAGAATTGCGAGCGCATGCTGATAAGAACATTGTGA
TCATCCTCATTGGTAACAAGTCTGATCTCGAAGATCAGAGAGCCATTCCC
ACTGAGGACGACGCCAAAGAGTTTGCTGAGAAGGAAGGTCTTTTCTTCCT
CGAGACGTCTGCATTGAACGCAACCAATGTCGAGAACTCATTCAACACTC
TCATGTCAGAGATCTTCAACACGGTTAACAAGAAGAGTCTCTCATCTGTT
GGTGAGTCAAATAACCCTGGTTCGTTGGCTGGTAAGAAGATTGTCATCCC
AGGTCCAGGACAGGAGGTTCCCGCTAAGACCAGCACGTGCTGTAGTTCTG
CTTGA
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protein sequence of BolC1t00100H-R

>BolC1t00100H-R-P ID=BolC1t00100H-R-P|Name=BolC1t00100H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=185bp
MKRSCFFFDFLLPSHSQITETSPDQTSQKTIKLTDIEYRAVTSAYYRGAV
GAMLVYDITKRETFDHIPRWLEELRAHADKNIVIILIGNKSDLEDQRAIP
TEDDAKEFAEKEGLFFLETSALNATNVENSFNTLMSEIFNTVNKKSLSSV
GESNNPGSLAGKKIVIPGPGQEVPAKTSTCCSSA.
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mRNA from alignment at C1:493046..494723+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00100H-R ID=BolC1t00100H-R|Name=BolC1t00100H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1678bp|location=Sequence derived from alignment at C1:493046..494723+ (Brassica oleracea HDEM)
ATGAAGCGATCCTGCTTCTTCTTTGATTTTCTGCTTCCTTCCCACTCTCA
AATCACTGAAACATCACCAGATCAAACAAGTCAGAAGACTATAAAACTAA
CAGATATTGAGTCACCAACGAGCCAACCTAGTATTGTTGCTGGCTGGCTG
CTGTCCCCAGGACCGAAGCATTGGGGTCAAAGACCAATTCATTTGGATTG
TAATGGAGTGTAGTGTAGACTGTGTAGTTTAGATCGAATGAAGAAGAATA
TATATATAGATCGGGGGAAATAATGTTACCGTTACGTTACGGCTAGTCAT
TAATCTAGAGTCTTTTGGTTGCCTTTTTAAATTATTTAGTTACGTTTCGA
CATTAATTTGGAGTCTTTTGGTTGCCTCTTTAAATTATCGAGTTACGTTT
GGACATTAATCTGGAGTCTTTTGGTTGCCTTTTTAAATTATTTGATAATC
TTGTCCCTTGGATGATAAATGCAATTTAATAGAATGCCACAACACATTAA
ATTTTTTAAGCAAGTAGTTTACTCGATACAGTGAATCCTTTAATACTAGC
CCTCGGATCAAAACTTTTGCTTGATAGAATATGCTTATATTTCTAGGCTA
CTCTAATTATATTTTAAATTCTGAAAAATGCATTTTTCTTAAACTACACT
TTCTTGCATGTCATATAATTAATAGTTTTATTGGTTTCAGCTATTCATCG
TGATCTTTGCTGGTATTTTTTTCCATTATTGAAGTTACTGCCACTTGAAT
TGAATCTCATACATGCAGGTGATTTAGCAAAAAAAAAAAAAAAAAACGCA
TGCACGTGATGAAGAAAACATAATGAACAAGAAGTCGTTGGTCGGATATG
TTCGTCCGGTGTTTTTTTTTTGAAACTTATGTTCTTCAGGTGTCCAGTGT
CCTCCCACATAAGTGTAGTCTTTCTAGATGATTCTCACATAAACTTTATA
ACATTCTAGGACATATTACATTGTAATTCTCACATAAACCCTAGTTCATA
TATTTTACTAACATTCTAGGACATATTACATTGTAATTCTTTGTACAGTT
AGCTAACAAACACTTTGTATATATATAAGCTGGAAACATAGTGTACAGTA
AGATTAATGCATGATTCATTGGTTTGATTTGGAACAGATACAGAGCGGTT
ACGAGCGCATACTACAGAGGAGCAGTTGGTGCGATGCTTGTTTATGATAT
TACCAAACGTGAGACCTTTGACCACATCCCTCGTTGGCTTGAAGAATTGC
GAGCGCATGCTGATAAGAACATTGTGATCATCCTCATTGGTAACAAGTCT
GATCTCGAAGATCAGAGAGCCATTCCCACTGAGGACGTATCAATTATATT
AGAGAACCCGGTTTAGACTGGTTCGATACATTATTTATGTTAGATTGTAT
TTTGGTTTACTCTGATTCAAGGGTATATATAGGACGCCAAAGAGTTTGCT
GAGAAGGAAGGTCTTTTCTTCCTCGAGACGTCTGCATTGAACGCAACCAA
TGTCGAGAACTCATTCAACACTCTCATGTCAGAGATCTTCAACACGGTTA
ACAAGAAGAGTCTCTCATCTGTTGGTGAGTCAAATAACCCTGGTTCGTTG
GCTGGTAAGAAGATTGTCATCCCAGGTCCAGGACAGGAGGTTCCCGCTAA
GACCAGCACGTGCTGTAGTTCTGCTTGA
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Coding sequence (CDS) from alignment at C1:493046..494723+

>BolC1t00100H-R ID=BolC1t00100H-R|Name=BolC1t00100H-R|organism=Brassica oleracea HDEM|type=CDS|length=555bp|location=Sequence derived from alignment at C1:493046..494723+ (Brassica oleracea HDEM)
ATGAAGCGATCCTGCTTCTTCTTTGATTTTCTGCTTCCTTCCCACTCTCA
AATCACTGAAACATCACCAGATCAAACAAGTCAGAAGACTATAAAACTAA
CAGATATTGAATACAGAGCGGTTACGAGCGCATACTACAGAGGAGCAGTT
GGTGCGATGCTTGTTTATGATATTACCAAACGTGAGACCTTTGACCACAT
CCCTCGTTGGCTTGAAGAATTGCGAGCGCATGCTGATAAGAACATTGTGA
TCATCCTCATTGGTAACAAGTCTGATCTCGAAGATCAGAGAGCCATTCCC
ACTGAGGACGACGCCAAAGAGTTTGCTGAGAAGGAAGGTCTTTTCTTCCT
CGAGACGTCTGCATTGAACGCAACCAATGTCGAGAACTCATTCAACACTC
TCATGTCAGAGATCTTCAACACGGTTAACAAGAAGAGTCTCTCATCTGTT
GGTGAGTCAAATAACCCTGGTTCGTTGGCTGGTAAGAAGATTGTCATCCC
AGGTCCAGGACAGGAGGTTCCCGCTAAGACCAGCACGTGCTGTAGTTCTG
CTTGA
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