BolC1t00062H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00062H-R
Unique NameBolC1t00062H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:312131..312538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size408
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00062HBolC1t00062HBrassica oleracea HDEMgeneC1 312131..312538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00062HBolC1t00062HBrassica oleracea HDEMCDSC1 312131..312538 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00062H_exon1BolC1t00062H_exon1Brassica oleracea HDEMexonC1 312131..312538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00062H-RBolC1t00062H-R-PBrassica oleracea HDEMpolypeptideC1 312131..312538 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00062H-R ID=BolC1t00062H-R|Name=BolC1t00062H-R|organism=Brassica oleracea HDEM|type=mRNA|length=408bp|location=Sequence derived from alignment at C1:312131..312538- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGACAACCAGATCTTCCACCGCCATGAACGGCGACGAACCACC
GCGTAAGATGATGACGAAACAGTCTCCGGAGATCTCGATTTTGTCTCTTC
CTTACGATTTGCTACTGAATTGCCTAGCGCGCGTCTCTAGATTGTACTAT
CCAACTCTCTCCCTCGTCTCCCAAAAGTTCCGATCCGTCGTCGCCTCGCC
GGATCTTTACGAGACTCGCGCCCTCTTACACCGCACCGAGAGTTGCCTCT
ATCTGTGCTTACGCTATAATCGAGATTACCCTCGTAACCTTGACACATAT
TGGTTCGCTCTCTGCCGCAAACCAAACCGAACCGTAACCGACCGGTCAAG
CGGCCGTCTTTTCATCCCGGTCTCATCTCCCCAACTGCGTCATGCCCTCT
TCTTCTAG
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protein sequence of BolC1t00062H-R

>BolC1t00062H-R-P ID=BolC1t00062H-R-P|Name=BolC1t00062H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=136bp
MSSTTRSSTAMNGDEPPRKMMTKQSPEISILSLPYDLLLNCLARVSRLYY
PTLSLVSQKFRSVVASPDLYETRALLHRTESCLYLCLRYNRDYPRNLDTY
WFALCRKPNRTVTDRSSGRLFIPVSSPQLRHALFF.
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mRNA from alignment at C1:312131..312538-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00062H-R ID=BolC1t00062H-R|Name=BolC1t00062H-R|organism=Brassica oleracea HDEM|type=mRNA|length=408bp|location=Sequence derived from alignment at C1:312131..312538- (Brassica oleracea HDEM)
ATGTCGTCGACAACCAGATCTTCCACCGCCATGAACGGCGACGAACCACC
GCGTAAGATGATGACGAAACAGTCTCCGGAGATCTCGATTTTGTCTCTTC
CTTACGATTTGCTACTGAATTGCCTAGCGCGCGTCTCTAGATTGTACTAT
CCAACTCTCTCCCTCGTCTCCCAAAAGTTCCGATCCGTCGTCGCCTCGCC
GGATCTTTACGAGACTCGCGCCCTCTTACACCGCACCGAGAGTTGCCTCT
ATCTGTGCTTACGCTATAATCGAGATTACCCTCGTAACCTTGACACATAT
TGGTTCGCTCTCTGCCGCAAACCAAACCGAACCGTAACCGACCGGTCAAG
CGGCCGTCTTTTCATCCCGGTCTCATCTCCCCAACTGCGTCATGCCCTCT
TCTTCTAG
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Coding sequence (CDS) from alignment at C1:312131..312538-

>BolC1t00062H-R ID=BolC1t00062H-R|Name=BolC1t00062H-R|organism=Brassica oleracea HDEM|type=CDS|length=408bp|location=Sequence derived from alignment at C1:312131..312538- (Brassica oleracea HDEM)
ATGTCGTCGACAACCAGATCTTCCACCGCCATGAACGGCGACGAACCACC
GCGTAAGATGATGACGAAACAGTCTCCGGAGATCTCGATTTTGTCTCTTC
CTTACGATTTGCTACTGAATTGCCTAGCGCGCGTCTCTAGATTGTACTAT
CCAACTCTCTCCCTCGTCTCCCAAAAGTTCCGATCCGTCGTCGCCTCGCC
GGATCTTTACGAGACTCGCGCCCTCTTACACCGCACCGAGAGTTGCCTCT
ATCTGTGCTTACGCTATAATCGAGATTACCCTCGTAACCTTGACACATAT
TGGTTCGCTCTCTGCCGCAAACCAAACCGAACCGTAACCGACCGGTCAAG
CGGCCGTCTTTTCATCCCGGTCTCATCTCCCCAACTGCGTCATGCCCTCT
TCTTCTAG
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