BolSC91t61268H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC91t61268H-R
Unique NameBolSC91t61268H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length60
Homology
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BLAST of BolSC91t61268H-R vs. GenBank_protein
Match: VDD66040.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 122 bits (305), Expect = 7.090e-35
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MDGTNCQTRIPNSEQPELLLTTSKKKNSLMKDGNHWKIKIRMSDEIVVVIVPITNQLNN 59
            MDGTNCQTRIPNSEQPELLLTTSKKKNSLMKDGNHWKIKIRMSDEIVVVIVPITNQLNN
Sbjct:    1 MDGTNCQTRIPNSEQPELLLTTSKKKNSLMKDGNHWKIKIRMSDEIVVVIVPITNQLNN 59
[Close]
BLAST of BolSC91t61268H-R vs. GenBank_protein
Match: VDD66012.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 58.5 bits (140), Expect = 9.780e-10
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:   29 LMKDGNHWKIKIRMSDEIVVVIVPITNQLNN 59
            LMKDGNHWKIKIRMSDEIVV I  IT+QLNN
Sbjct:   25 LMKDGNHWKIKIRMSDEIVVAICSITDQLNN 55
The following BLAST results are available for this feature:
BLAST of BolSC91t61268H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 2
Match NameE-valueIdentityDescription
VDD66040.17.090e-35100.00unnamed protein product [Brassica oleracea][more]
VDD66012.19.780e-1087.10unnamed protein product [Brassica oleracea][more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_91contigBoleracea_scaffold_91:15766..15945 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC91t61268H-RBolSC91t61268H-RBrassica oleracea HDEMmRNABoleracea_scaffold_91 15766..15945 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC91t61268H-R-P ID=BolSC91t61268H-R-P|Name=BolSC91t61268H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=60bp
MDGTNCQTRIPNSEQPELLLTTSKKKNSLMKDGNHWKIKIRMSDEIVVVI
VPITNQLNN.
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