BolSC55t61229H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC55t61229H-R
Unique NameBolSC55t61229H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length405
Homology
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: VDD66001.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 801 bits (2070), Expect = 1.300e-292
Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 0 
Query:    1 MPKKSVHYYLWKQHAKREKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDKNKRPVLILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            MPKKSVHYYLWKQHAKREKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDKNKRPVLILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:    1 MPKKSVHYYLWKQHAKREKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDKNKRPVLILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: VDC69285.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 740 bits (1910), Expect = 7.180e-268
Identity = 389/427 (91.10%), Postives = 395/427 (92.51%), Query Frame = 0 
Query:    1 MPKKSVHYYLWKQHAKR-EKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDKNKRPVL---------ILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLV-----------TPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE--GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            MPKKSVHYYLWKQHAKR EKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSD N+R V          I+ IRL ARE  GLI+EPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXX NVPDHLFKGDCKSIFSERGCTLCL+IFEDATALADHKNKCHLSAPLPLV           TPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRH +TGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE  GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:    1 MPKKSVHYYLWKQHAKRGEKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDTNRRRVKQMIVEGVERIVLIRLIARE-RGLIMEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXXNVPDHLFKGDCKSIFSERGCTLCLRIFEDATALADHKNKCHLSAPLPLVIFALDIYSSQVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHTLTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 426
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: CAF2093099.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 739 bits (1909), Expect = 1.060e-267
Identity = 389/428 (90.89%), Postives = 395/428 (92.29%), Query Frame = 0 
Query:    1 MPKKSVHYYLWKQHAKR-EKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDKNKRPVL---------ILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLV-----------TPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE---GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            MPKKSVHYYLWKQHAKR EKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSD N+R V          I+ IRL ARE  GLI+EPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXX NVPDHLFKGDCKSIFSERGCTLCL+IFEDATALADHKNKCHLSAPLPLV           TPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRH +TGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE   GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:    1 MPKKSVHYYLWKQHAKRGEKIEGEISWVENRKGGNFRQIFQKRKNTNLNTRKKVVQSDTNRRRVKQMIVEGVERIVLIRLIARE-RGLIMEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXXNVPDHLFKGDCKSIFSERGCTLCLRIFEDATALADHKNKCHLSAPLPLVIFALDIYSSQVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHTLTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 427
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: KAG2290428.1 (hypothetical protein Bca52824_050032 [Brassica carinata])

HSP 1 Score: 629 bits (1622), Expect = 1.540e-225
Identity = 318/321 (99.07%), Postives = 318/321 (99.07%), Query Frame = 0 
Query:   84 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            RHRCVACFKMFNRRQHLVEHMKISHHSLHQPR  XXXXXXXXXXXXXXX NVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:   11 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRXXXXXXXXXXXXXXXXXXNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 331
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: RID60832.1 (hypothetical protein BRARA_E00027 [Brassica rapa])

HSP 1 Score: 628 bits (1620), Expect = 2.780e-225
Identity = 319/328 (97.26%), Postives = 324/328 (98.78%), Query Frame = 0 
Query:   80 LEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGG-DDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAE--EEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            +EPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCL+IFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGG DDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRH +TGLTEEDLKNGMRLQDVREKVLAILCGGH+DGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAE  EEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:    1 MEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLRIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHTLTGLTEEDLKNGMRLQDVREKVLAILCGGHSDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEKEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 328
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: XP_013635855.1 (PREDICTED: RNA exonuclease 4 [Brassica oleracea var. oleracea] >CDY66265.1 BnaC04g51770D [Brassica napus])

HSP 1 Score: 627 bits (1618), Expect = 6.260e-225
Identity = 317/321 (98.75%), Postives = 318/321 (99.07%), Query Frame = 0 
Query:   84 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            RHRCVACFKMFNRRQHLVEHMKISHHSLHQPR  XXXXXXXXXXXXXXX NVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:   11 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRXXXXXXXXXXXXXXXXXXNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 331
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: KAF3553477.1 (hypothetical protein F2Q69_00010203 [Brassica cretica])

HSP 1 Score: 625 bits (1612), Expect = 1.750e-223
Identity = 316/321 (98.44%), Postives = 317/321 (98.75%), Query Frame = 0 
Query:   84 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            RHRCVACFKMFNRRQHLVEHMKISHHS HQPR  XXXXXXXXXXXXXXX NVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:   44 RHRCVACFKMFNRRQHLVEHMKISHHSRHQPRXXXXXXXXXXXXXXXXXXNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 364
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: KAF2603683.1 (hypothetical protein F2Q70_00024181 [Brassica cretica])

HSP 1 Score: 620 bits (1598), Expect = 1.760e-221
Identity = 318/342 (92.98%), Postives = 322/342 (94.15%), Query Frame = 0 
Query:   63 VLILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            +++L  RL  R    L      HRCVACFKMFNRRQHLVEHMKISHHSLHQP   XXXXXXXXXXXXXXX   PDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:   15 LILLSNRLIFRHDSPLSHRILWHRCVACFKMFNRRQHLVEHMKISHHSLHQPXXXXXXXXXXXXXXXXXXXXXPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 356
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: XP_009142478.1 (RNA exonuclease 4 [Brassica rapa])

HSP 1 Score: 617 bits (1592), Expect = 5.930e-221
Identity = 314/323 (97.21%), Postives = 317/323 (98.14%), Query Frame = 0 
Query:   84 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE--GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            RHRCVACFKMFNRRQHLVEHMKISHHSLHQPR  XXXXXXXXXXXXXXX NVPDHLFKGDCKSIFSERGCTLCL+IFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCA+ICLVDEDEHVIFSTHVQPQLPVTDYRH +TGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE  GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:   10 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRXXXXXXXXXXXXXXXXXXNVPDHLFKGDCKSIFSERGCTLCLRIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCASICLVDEDEHVIFSTHVQPQLPVTDYRHTLTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 332
[Close]
BLAST of BolSC55t61229H-R vs. GenBank_protein
Match: KAF8074365.1 (hypothetical protein N665_1107s0005 [Sinapis alba])

HSP 1 Score: 616 bits (1588), Expect = 2.410e-220
Identity = 295/324 (91.05%), Postives = 302/324 (93.21%), Query Frame = 0 
Query:   84 RHRCVACFKMFNRRQHLVEHMKISHHSLHQPRCGXXXXXXXXXXXXXXXLNVPDHLFKGDCKSIFSERGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAIDCEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTEEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAAMRLYKRMRDQEHGKAEEE---GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 404
            RHRCVAC+KMFNRRQHLVEHMKISHHSLHQPRCG               LNVPDHLFKGDCK+IFSERGC LCLQIFEDATALADHKN CHLSAPLPLV PTRTLGVNTRLKAVAIDCEMVGGGDDGS DLCA++CLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLT+EDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCV+AMRLYKRMRDQEHGKAE+E   GDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR
Sbjct:    9 RHRCVACYKMFNRRQHLVEHMKISHHSLHQPRCGVCFKHCKSFESVREHLNVPDHLFKGDCKTIFSERGCALCLQIFEDATALADHKNNCHLSAPLPLVNPTRTLGVNTRLKAVAIDCEMVGGGDDGSIDLCASVCLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLTQEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQYPSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVSAMRLYKRMRDQEHGKAEKEEEKGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWCLDRR 332
The following BLAST results are available for this feature:
BLAST of BolSC55t61229H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD66001.11.300e-292100.00unnamed protein product [Brassica oleracea][more]
VDC69285.17.180e-26891.10unnamed protein product [Brassica rapa][more]
CAF2093099.11.060e-26790.89unnamed protein product [Brassica napus][more]
KAG2290428.11.540e-22599.07hypothetical protein Bca52824_050032 [Brassica car... [more]
RID60832.12.780e-22597.26hypothetical protein BRARA_E00027 [Brassica rapa][more]
XP_013635855.16.260e-22598.75PREDICTED: RNA exonuclease 4 [Brassica oleracea va... [more]
KAF3553477.11.750e-22398.44hypothetical protein F2Q69_00010203 [Brassica cret... [more]
KAF2603683.11.760e-22192.98hypothetical protein F2Q70_00024181 [Brassica cret... [more]
XP_009142478.15.930e-22197.21RNA exonuclease 4 [Brassica rapa][more]
KAF8074365.12.410e-22091.05hypothetical protein N665_1107s0005 [Sinapis alba][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006364 rRNA processing
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000976 transcription regulatory region sequence-specific DNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 151..174
e-value: 16.0
score: 11.4
coord: 114..138
e-value: 25.0
score: 9.7
coord: 85..108
e-value: 0.19
score: 20.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 153..174
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 87..109
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 85..114
score: 11.239817
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 195..363
e-value: 4.9E-44
score: 162.3
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 197..354
e-value: 7.2E-15
score: 55.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 192..373
e-value: 1.2E-45
score: 157.3
NoneNo IPR availablePANTHERPTHR12801:SF123EXONUCLEASE FAMILY PROTEINcoord: 83..403
NoneNo IPR availablePANTHERPTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDcoord: 83..403
IPR037431RNA exonuclease 4, DEDDh 3'-5' exonuclease domainCDDcd06144REX4_likecoord: 197..355
e-value: 6.51083E-77
score: 233.177
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 196..357

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_55contigBoleracea_scaffold_55:45161..50435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC55t61229H-RBolSC55t61229H-RBrassica oleracea HDEMmRNABoleracea_scaffold_55 45161..50435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC55t61229H-R-P ID=BolSC55t61229H-R-P|Name=BolSC55t61229H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=405bp
MPKKSVHYYLWKQHAKREKIEGEISWVENRKGGNFRQIFQKRKNTNLNTR
KKVVQSDKNKRPVLILWIRLKARESEGLILEPCRHRCVACFKMFNRRQHL
VEHMKISHHSLHQPRCGVCFKHCKSFESVREHLNVPDHLFKGDCKSIFSE
RGCTLCLQIFEDATALADHKNKCHLSAPLPLVTPTRTLGVNTRLKAVAID
CEMVGGGDDGSTDLCATICLVDEDEHVIFSTHVQPQLPVTDYRHKVTGLT
EEDLKNGMRLQDVREKVLAILCGGHNDGAGRLLLVGHDLRHDMKCLKLQY
PSHLLRDTAKYVPLMKTNLVSQSLKYLTRSYLGYKIQCGKHEPYEDCVAA
MRLYKRMRDQEHGKAEEEGDGLNSWKQSDLEKMKPEELYHNSTSEYRCWC
LDRR.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000976transcription regulatory region sequence-specific DNA binding
GO:00084083'-5' exonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR037431REX4_DEDDh_dom
IPR036397RNaseH_sf
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR013087Znf_C2H2_type
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0090305nucleic acid phosphodiester bond hydrolysis