BolSC55t61223H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC55t61223H-R
Unique NameBolSC55t61223H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length230
Homology
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: VDD65995.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 400 bits (1027), Expect = 1.590e-139
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRKTLQHSNATRFRH 229
            MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRKTLQHSNATRFRH
Sbjct:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRKTLQHSNATRFRH 229          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: KAG2290662.1 (hypothetical protein Bca52824_050266 [Brassica carinata])

HSP 1 Score: 357 bits (916), Expect = 1.660e-121
Identity = 206/227 (90.75%), Postives = 208/227 (91.63%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRKTLQHSNATRF 227
            M+STSLVLT+A PLFS        ALKK T TTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQRE     XXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETF  KTLQHSNAT F
Sbjct:    1 MASTSLVLTIAPPLFSS-------ALKKKTMTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFHGKTLQHSNATGF 220          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: XP_033147147.1 (protein PALE CRESS, chloroplastic isoform X2 [Brassica rapa])

HSP 1 Score: 352 bits (903), Expect = 1.860e-119
Identity = 202/217 (93.09%), Postives = 204/217 (94.01%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLTLA PLFSRRP SARVALKK T   EPSVK RRRCSGKEEVLLEGMPPEYYDDEWQARQRE      XXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPR+
Sbjct:    1 MASTSLVLTLAPPLFSRRPDSARVALKKKT---EPSVKLRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELRXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRE 214          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: CAF2093096.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 350 bits (899), Expect = 6.160e-119
Identity = 201/217 (92.63%), Postives = 204/217 (94.01%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLTLA PLFSRRP SARVALKK T  + PSVK RRRCSGKEEVLLEGMPPEYYDDEWQARQRE      XXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPR+
Sbjct:    1 MASTSLVLTLAPPLFSRRPDSARVALKKKTEPS-PSVKLRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELRXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRE 216          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: XP_009142474.1 (protein PALE CRESS, chloroplastic isoform X1 [Brassica rapa] >XP_022574689.1 protein PALE CRESS, chloroplastic-like isoform X2 [Brassica napus] >RID60834.1 hypothetical protein BRARA_E00029 [Brassica rapa] >VDC69283.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 350 bits (899), Expect = 8.100e-119
Identity = 201/217 (92.63%), Postives = 204/217 (94.01%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLTLA PLFSRRP SARVALKK T  + PSVK RRRCSGKEEVLLEGMPPEYYDDEWQARQRE      XXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPR+
Sbjct:    1 MASTSLVLTLAPPLFSRRPDSARVALKKKTEPS-PSVKLRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELRXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRE 216          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: KAF8074362.1 (hypothetical protein N665_1107s0003 [Sinapis alba])

HSP 1 Score: 348 bits (892), Expect = 1.080e-117
Identity = 195/217 (89.86%), Postives = 199/217 (91.71%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSL+LTLAS LFSR PVSARVALKK T  T PSVK+ RRCSGKEEVLLEGMPPEYYDDEWQARQRE        XXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFI AAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETE LKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRM ETFPR+
Sbjct:    1 MASTSLLLTLASSLFSRGPVSARVALKKKTMITNPSVKYTRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELRRMXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEFLKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMTETFPRE 217          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: VDD65991.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 344 bits (882), Expect = 1.190e-117
Identity = 198/217 (91.24%), Postives = 201/217 (92.63%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLT+A PLFS        ALKK T TTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQRE     XXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPR+
Sbjct:    1 MASTSLVLTIAPPLFSS-------ALKKKTMTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRE 210          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: XP_013635856.1 (PREDICTED: protein PALE CRESS, chloroplastic [Brassica oleracea var. oleracea] >XP_013690385.1 protein PALE CRESS, chloroplastic isoform X2 [Brassica napus] >CDY65703.1 BnaCnng48330D [Brassica napus])

HSP 1 Score: 344 bits (882), Expect = 2.530e-116
Identity = 198/217 (91.24%), Postives = 201/217 (92.63%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLT+A PLFS        ALKK T TTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQRE     XXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPR+
Sbjct:    1 MASTSLVLTIAPPLFSS-------ALKKKTMTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRE 210          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: XP_013731157.1 (protein PALE CRESS, chloroplastic [Brassica napus])

HSP 1 Score: 344 bits (882), Expect = 2.530e-116
Identity = 192/217 (88.48%), Postives = 195/217 (89.86%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLT+A PLFS        ALKK T TTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQRE           XXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPR+
Sbjct:    1 MASTSLVLTIAPPLFSS-------ALKKKTMTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELRWMQREXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRE 210          
BLAST of BolSC55t61223H-R vs. GenBank_protein
Match: KAG2326010.1 (hypothetical protein Bca52824_008738 [Brassica carinata])

HSP 1 Score: 341 bits (875), Expect = 3.040e-115
Identity = 195/217 (89.86%), Postives = 201/217 (92.63%), Query Frame = 0
Query:    1 MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVLLEGMPPEYYDDEWQARQREXXXXXXXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPRK 217
            M+STSLVLTLASPLFSR       + KK T +TEPSVKF+RRCSGKEEVLLEGMPPEYYDDEWQARQRE      XXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMA+TFPR+
Sbjct:    1 MASTSLVLTLASPLFSRV-----ASKKKKTMSTEPSVKFKRRCSGKEEVLLEGMPPEYYDDEWQARQREKTKELRXXXXXXXXXXXRKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMADTFPRE 212          
The following BLAST results are available for this feature:
BLAST of BolSC55t61223H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65995.11.590e-139100.00unnamed protein product [Brassica oleracea][more]
KAG2290662.11.660e-12190.75hypothetical protein Bca52824_050266 [Brassica car... [more]
XP_033147147.11.860e-11993.09protein PALE CRESS, chloroplastic isoform X2 [Bras... [more]
CAF2093096.16.160e-11992.63unnamed protein product, partial [Brassica napus][more]
XP_009142474.18.100e-11992.63protein PALE CRESS, chloroplastic isoform X1 [Bras... [more]
KAF8074362.11.080e-11789.86hypothetical protein N665_1107s0003 [Sinapis alba][more]
VDD65991.11.190e-11791.24unnamed protein product [Brassica oleracea][more]
XP_013635856.12.530e-11691.24PREDICTED: protein PALE CRESS, chloroplastic [Bras... [more]
XP_013731157.12.530e-11688.48protein PALE CRESS, chloroplastic [Brassica napus][more]
KAG2326010.13.040e-11589.86hypothetical protein Bca52824_008738 [Brassica car... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071482 cellular response to light stimulus
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0009658 chloroplast organization
biological_process GO:0048366 leaf development
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0009501 amyloplast
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0009509 chromoplast
cellular_component GO:0009513 etioplast
cellular_component GO:0009536 plastid
cellular_component GO:0009537 proplastid
molecular_function GO:0043621 protein self-association
molecular_function GO:0019843 rRNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..134
NoneNo IPR availableCOILSCoilCoilcoord: 64..95
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..22
score: 0.491
IPR034563Protein PALE CRESSPANTHERPTHR37219PROTEIN PALE CRESS, CHLOROPLASTICcoord: 8..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_55contigBoleracea_scaffold_55:16381..21068 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC55t61223H-RBolSC55t61223H-RBrassica oleracea HDEMmRNABoleracea_scaffold_55 16381..21068 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC55t61223H-R-P ID=BolSC55t61223H-R-P|Name=BolSC55t61223H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=230bp
MSSTSLVLTLASPLFSRRPVSARVALKKNTTTTEPSVKFRRRCSGKEEVL
LEGMPPEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGLRLK
EFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLD
LARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDD
AWLKDCRKRMAETFPRKTLQHSNATRFRH.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0009536plastid
GO:0009513etioplast
GO:0042644chloroplast nucleoid
GO:0009537proplastid
GO:0009501amyloplast
GO:0009509chromoplast
Vocabulary: Biological Process
TermDefinition
GO:0048366leaf development
GO:0009965leaf morphogenesis
GO:0009658chloroplast organization
GO:0010239chloroplast mRNA processing
GO:0042254ribosome biogenesis
GO:0071482cellular response to light stimulus
Vocabulary: INTERPRO
TermDefinition
IPR034563PALE_CRESS
Vocabulary: Molecular Function
TermDefinition
GO:0043621protein self-association
GO:0019843rRNA binding