BolSC49t61187H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC49t61187H-R
Unique NameBolSC49t61187H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length43
Homology
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BLAST of BolSC49t61187H-R vs. GenBank_protein
Match: VDD65959.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 78.2 bits (191), Expect = 5.880e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 
Query:    1 MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV 42
            MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV
Sbjct:    1 MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV 42
The following BLAST results are available for this feature:
BLAST of BolSC49t61187H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 1
Match NameE-valueIdentityDescription
VDD65959.15.880e-18100.00unnamed protein product [Brassica oleracea][more]
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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..42
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_49contigBoleracea_scaffold_49:102638..102766 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC49t61187H-RBolSC49t61187H-RBrassica oleracea HDEMmRNABoleracea_scaffold_49 102638..102766 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC49t61187H-R-P ID=BolSC49t61187H-R-P|Name=BolSC49t61187H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=43bp
MIFSGHFLIISSAIPVLAFLISGVLSPITKGPEKLFLVMNQV.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane