BolSC49t61161H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC49t61161H-R
Unique NameBolSC49t61161H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length134
Homology
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: VDD65303.1 (unnamed protein product, partial [Brassica oleracea] >VDD65384.1 unnamed protein product, partial [Brassica oleracea] >VDD65444.1 unnamed protein product, partial [Brassica oleracea] >VDD65933.1 unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 267 bits (683), Expect = 3.150e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: ASY93398.1 (ribosomal protein L16 [Brassica rapa] >ASY93485.1 ribosomal protein L16 [Brassica rapa subsp. chinensis] >ASY94007.1 ribosomal protein L16 [Brassica oleracea var. capitata] >ASY94094.1 ribosomal protein L16 [Brassica oleracea var. botrytis] >ASY94181.1 ribosomal protein L16 [Brassica oleracea var. gongylodes] >ASY94268.1 ribosomal protein L16 [Brassica oleracea var. italica] >ASY94790.1 ribosomal protein L16 [Brassica juncea subsp. integrifolia])

HSP 1 Score: 267 bits (683), Expect = 3.490e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: YP_009177902.1 (ribosomal protein L16 [Brassica juncea] >ALK26720.1 ribosomal protein L16 [Brassica juncea])

HSP 1 Score: 267 bits (683), Expect = 3.490e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: YP_005089989.1 (rpl16 gene product [Brassica napus] >YP_009553804.1 ribosomal protein L16 [Brassica rapa] >YP_009564612.1 ribosomal protein L16 [Brassica oleracea] >YP_009907398.1 ribosomal protein L16 [Brassica rapa subsp. rapa] >ANW83315.1 ribosomal protein L16 [Brassica napus var. napus] >ASY93572.1 ribosomal protein L16 [Brassica rapa subsp. pekinensis] >ASY94703.1 ribosomal protein L16 [Brassica juncea subsp. integrifolia] >ASY94877.1 ribosomal protein L16 [Brassica juncea] >ACY66275.1 ribosomal protein L16 [Brassica napus])

HSP 1 Score: 267 bits (683), Expect = 3.610e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    5 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 137
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: YP_009000370.1 (rpl16 protein [Arabis alpina] >YP_009353788.1 ribosomal protein L16 [Alyssum desertorum] >YP_009827391.1 ribosomal protein L16 [Arabis scabra] >AQZ25132.1 ribosomal protein L16 [Alyssum desertorum] >QIV22553.1 ribosomal protein L16 [Arabis scabra] >QIV22638.1 ribosomal protein L16 [Arabis scabra] >QIV22723.1 ribosomal protein L16 [Arabis scabra] >QIV22808.1 ribosomal protein L16 [Arabis scabra])

HSP 1 Score: 266 bits (679), Expect = 1.420e-89
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRT+FRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: ANW47827.1 (ribosomal protein L16 [Arabidopsis thaliana] >ASM41962.1 ribosomal protein L16 [Alyssum gmelinii] >QBI37836.1 ribosomal protein L16 [Arabidopsis thaliana])

HSP 1 Score: 266 bits (679), Expect = 1.420e-89
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRT+FRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: AKM97954.1 (ribosomal protein L16 [Brassica oleracea var. capitata] >AZQ05859.1 ribosomal protein L16 [Brassica oleracea var. italica] >AZQ05948.1 ribosomal protein L16 [Brassica oleracea var. italica])

HSP 1 Score: 265 bits (678), Expect = 1.830e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 
Query:    2 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    2 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: KAF8100524.1 (hypothetical protein N665_0221s0001 [Sinapis alba])

HSP 1 Score: 266 bits (679), Expect = 1.930e-89
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRT+FRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:   13 NPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 145
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: QNQ65450.1 (ribosomal protein L16 [Brassica rapa])

HSP 1 Score: 265 bits (678), Expect = 1.950e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 
Query:    2 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 135
[Close]
BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: ASY94355.1 (ribosomal protein L16 [Raphanus raphanistrum subsp. landra] >ASY94442.1 ribosomal protein L16 [Raphanus sativus var. raphanistroides] >ASY94529.1 ribosomal protein L16 [Raphanus sativus var. sativus] >ASY94616.1 ribosomal protein L16 [Raphanus sativus var. sativus])

HSP 1 Score: 265 bits (678), Expect = 2.020e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 
Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFII E
Sbjct:    4 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIICE 136
The following BLAST results are available for this feature:
BLAST of BolSC49t61161H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65303.13.150e-90100.00unnamed protein product, partial [Brassica olerace... [more]
ASY93398.13.490e-90100.00ribosomal protein L16 [Brassica rapa] >ASY93485.1 ... [more]
YP_009177902.13.490e-90100.00ribosomal protein L16 [Brassica juncea] >ALK26720.... [more]
YP_005089989.13.610e-90100.00rpl16 gene product [Brassica napus] >YP_009553804.... [more]
YP_009000370.11.420e-8998.50rpl16 protein [Arabis alpina] >YP_009353788.1 ribo... [more]
ANW47827.11.420e-8998.50ribosomal protein L16 [Arabidopsis thaliana] >ASM4... [more]
AKM97954.11.830e-89100.00ribosomal protein L16 [Brassica oleracea var. capi... [more]
KAF8100524.11.930e-8998.50hypothetical protein N665_0221s0001 [Sinapis alba][more]
QNQ65450.11.950e-89100.00ribosomal protein L16 [Brassica rapa][more]
ASY94355.12.020e-8999.25ribosomal protein L16 [Raphanus raphanistrum subsp... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 22..34
score: 46.62
coord: 40..51
score: 71.5
coord: 86..115
score: 59.2
coord: 56..85
score: 69.33
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 2..125
e-value: 2.9E-61
score: 203.1
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 1..132
IPR000114Ribosomal protein L16HAMAPMF_01342Ribosomal_L16coord: 1..132
score: 37.463913
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 1..133
e-value: 1.9E-65
score: 222.2
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 2..132
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 2..130
e-value: 9.8E-50
score: 168.0
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 21..130
e-value: 3.14456E-52
score: 158.809
NoneNo IPR availablePANTHERPTHR12220:SF1339S RIBOSOMAL PROTEIN L16, MITOCHONDRIALcoord: 1..132
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 80..91
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 57..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_49contigBoleracea_scaffold_49:71132..71533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC49t61161H-RBolSC49t61161H-RBrassica oleracea HDEMmRNABoleracea_scaffold_49 71132..71533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC49t61161H-R-P ID=BolSC49t61161H-R-P|Name=BolSC49t61161H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=134bp
NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRR
AMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKI
LYEMGGVPENIARKAISIAASKMPIKTQFIISE.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020798Ribosomal_L16_CS
IPR016180Ribosomal_L10e/L16
IPR036920Ribosomal_L10e/L16_sf
IPR000114Ribosomal_L16
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0005840ribosome