BolSC49t61143H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC49t61143H-R
Unique NameBolSC49t61143H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length60
Homology
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BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD65915.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 107 bits (266), Expect = 6.390e-29
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFFFLIIPN 59
            MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFFFLIIPN
Sbjct:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFFFLIIPN 59
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BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD65318.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 94.0 bits (232), Expect = 9.410e-24
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFFFLIIPN 59
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF LIIPN
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF-LIIPN 57
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BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD65464.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 91.7 bits (226), Expect = 7.570e-23
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFFFLIIPN 59
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADF  LIIPN
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADF--LIIPN 56
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BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD26377.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 90.9 bits (224), Expect = 1.530e-22
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFFFLIIPN 59
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFA  FFLIIPN
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFA--FFLIIPN 56
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BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: CAF1728838.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 89.7 bits (221), Expect = 3.980e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 53
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 52
[Close]
BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD65278.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 89.7 bits (221), Expect = 5.660e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 53
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 52
[Close]
BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD25508.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 89.7 bits (221), Expect = 5.810e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 53
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 52
[Close]
BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD26824.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 89.7 bits (221), Expect = 6.450e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 53
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 52
[Close]
BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: VDD65681.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 89.7 bits (221), Expect = 6.630e-22
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 53
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 52
[Close]
BLAST of BolSC49t61143H-R vs. GenBank_protein
Match: YP_005090005.1 (ndhE gene product [Brassica napus] >YP_009177918.1 NADH-plastoquinone oxidoreductase subunit 4L [Brassica juncea] >YP_009553820.1 NADH dehydrogenase subunit 4L [Brassica rapa] >YP_009564628.1 NADH dehydrogenase subunit 4L [Brassica oleracea] >YP_009907414.1 NdhE [Brassica rapa subsp. rapa] >AKM97971.1 NdhE [Brassica oleracea var. capitata] >ANW83331.1 NdhE [Brassica napus var. napus] >ASY93501.1 NdhE [Brassica rapa subsp. chinensis] >ASY93588.1 NdhE [Brassica rapa subsp. pekinensis] >ASY94110.1 NdhE [Brassica oleracea var. botrytis] >ASY94197.1 NdhE [Brassica oleracea var. gongylodes] >ASY94284.1 NdhE [Brassica oleracea var. italica] >ASY94719.1 NdhE [Brassica juncea subsp. integrifolia])

HSP 1 Score: 89.7 bits (221), Expect = 1.470e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 
Query:    1 MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 53
            MILEHVLVLSAYLF LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF
Sbjct:    1 MILEHVLVLSAYLF-LIGLYGLITSRNMVRALMCLELILNAVNMNLVTFADFF 52
The following BLAST results are available for this feature:
BLAST of BolSC49t61143H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65915.16.390e-29100.00unnamed protein product [Brassica oleracea][more]
VDD65318.19.410e-2496.61unnamed protein product [Brassica oleracea][more]
VDD65464.17.570e-2394.92unnamed protein product [Brassica oleracea][more]
VDD26377.11.530e-2294.92unnamed protein product [Brassica rapa][more]
CAF1728838.13.980e-2298.11unnamed protein product [Brassica napus][more]
VDD65278.15.660e-2298.11unnamed protein product [Brassica oleracea][more]
VDD25508.15.810e-2298.11unnamed protein product [Brassica rapa][more]
VDD26824.16.450e-2298.11unnamed protein product [Brassica rapa][more]
VDD65681.16.630e-2298.11unnamed protein product [Brassica oleracea][more]
YP_005090005.11.470e-2198.11ndhE gene product [Brassica napus] >YP_009177918.1... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0050136 NADH dehydrogenase (quinone) activity
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0048038 quinone binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likePFAMPF00420Oxidored_q2coord: 7..52
e-value: 5.8E-13
score: 48.4
NoneNo IPR availableGENE3D1.10.287.3510coord: 1..58
e-value: 1.9E-12
score: 48.8
NoneNo IPR availablePANTHERPTHR11434:SF16NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 4L, CHLOROPLASTIC-RELATEDcoord: 2..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 5..23
IPR001133NADH-ubiquinone oxidoreductase chain 4L/KPANTHERPTHR11434NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT ND4Lcoord: 2..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_49contigBoleracea_scaffold_49:31849..32028 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC49t61143H-RBolSC49t61143H-RBrassica oleracea HDEMmRNABoleracea_scaffold_49 31849..32028 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC49t61143H-R-P ID=BolSC49t61143H-R-P|Name=BolSC49t61143H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=60bp
MILEHVLVLSAYLFFLIGLYGLITSRNMVRALMCLELILNAVNMNLVTFA
DFFFLIIPN.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0048038quinone binding
GO:0050136NADH dehydrogenase (quinone) activity
Vocabulary: INTERPRO
TermDefinition
IPR001133NADH_UbQ_OxRdtase_chain4L/K
IPR039428NUOK/Mnh_C1-like
Vocabulary: Cellular Component
TermDefinition
GO:0009535chloroplast thylakoid membrane
GO:0005886plasma membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0042773ATP synthesis coupled electron transport
GO:0019684photosynthesis, light reaction