BolSC46t61009H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC46t61009H-R
Unique NameBolSC46t61009H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length63
Homology
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: CAF2058837.1 (unnamed protein product [Brassica napus] >VDD22403.1 unnamed protein product [Brassica rapa] >VDD65250.1 unnamed protein product [Brassica oleracea] >CAF2058871.1 unnamed protein product [Brassica napus] >CDY46565.1 BnaA08g02040D [Brassica napus])

HSP 1 Score: 128 bits (322), Expect = 2.210e-37
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
            MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: CAF1857235.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 118 bits (296), Expect = 2.060e-33
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
            MPTIKQLIRNTR PI+N TKSPALR CPQRRGTCT+VYVRLSSKSHWNFFLYIGIIRLVIND
Sbjct:    1 MPTIKQLIRNTRHPIQNFTKSPALRECPQRRGTCTQVYVRLSSKSHWNFFLYIGIIRLVIND 62
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: VDD65512.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 115 bits (288), Expect = 3.720e-32
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLS--SKSHWNFF-LYIGIIRLVIND 62
            MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL   +KSHWNFF LYIGIIRLVIND
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVRVAKSHWNFFFLYIGIIRLVIND 65
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: VDD25602.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 112 bits (279), Expect = 8.120e-31
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
            MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVR++ KS   FFLYIGIIRLVIND
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRVAKKSIGIFFLYIGIIRLVIND 62
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: CAF1908361.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 102 bits (253), Expect = 7.360e-27
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
            MPTIKQL+RNTRQPIRNVT SPALRGCPQRRGTCTRVYVR++ K+   FFLYIGIIRLVIND
Sbjct:    1 MPTIKQLMRNTRQPIRNVTISPALRGCPQRRGTCTRVYVRVA-KAIGIFFLYIGIIRLVIND 61
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: VDD24609.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 96.3 bits (238), Expect = 1.470e-24
Identity = 55/65 (84.62%), Postives = 55/65 (84.62%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRG-CPQRRGT--CTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
            MPTIKQLIRNTRQPIRNVTKSPALRG CPQRRGT  CTRVYVRL       FFLYIGIIRLVIND
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGGCPQRRGTGTCTRVYVRLQKPF---FFLYIGIIRLVIND 62
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: PIA35000.1 (hypothetical protein AQUCO_03700331v1 [Aquilegia coerulea])

HSP 1 Score: 95.1 bits (235), Expect = 7.030e-24
Identity = 52/78 (66.67%), Postives = 54/78 (69.23%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRV-----------------YVRLSSKSHWNFFLYIGIIRLVIN 61
            MPTIKQLIRNTRQPI+NVTKSPAL GCPQRRGTCTRV                 +   SSKSHWNFFLY G IR VIN
Sbjct:    1 MPTIKQLIRNTRQPIKNVTKSPALWGCPQRRGTCTRVVSITFLFGVKCLEKNSGWEGHSSKSHWNFFLYTGRIRFVIN 78
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: AVV66134.1 (ribosomal protein S12, partial [Asarum sieboldii var. sieboldii] >AVV66160.1 ribosomal protein S12, partial [Asarum epigynum] >AVV66254.1 ribosomal protein S12, partial [Asarum megacalyx])

HSP 1 Score: 89.0 bits (219), Expect = 8.510e-22
Identity = 43/48 (89.58%), Postives = 43/48 (89.58%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWN 48
            MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL     WN
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMSWN 48
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: RZC73970.1 (hypothetical protein C5167_049455 [Papaver somniferum])

HSP 1 Score: 89.7 bits (221), Expect = 2.130e-21
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWN 48
            MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL    +WN
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMNWN 48
[Close]
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: AZZ73141.1 (ribosomal protein S12 [Rheum officinale] >AZZ73209.1 ribosomal protein S12 [Rheum tanguticum])

HSP 1 Score: 87.8 bits (216), Expect = 2.680e-21
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0 
Query:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFF 50
            MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL    +W  F
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMNWANF 50
The following BLAST results are available for this feature:
BLAST of BolSC46t61009H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CAF2058837.12.210e-37100.00unnamed protein product [Brassica napus] >VDD22403... [more]
CAF1857235.12.060e-3391.94unnamed protein product [Brassica napus][more]
VDD65512.13.720e-3292.31unnamed protein product [Brassica oleracea][more]
VDD25602.18.120e-3190.32unnamed protein product [Brassica rapa][more]
CAF1908361.17.360e-2785.48unnamed protein product [Brassica napus][more]
VDD24609.11.470e-2484.62unnamed protein product [Brassica rapa][more]
PIA35000.17.030e-2466.67hypothetical protein AQUCO_03700331v1 [Aquilegia c... [more]
AVV66134.18.510e-2289.58ribosomal protein S12, partial [Asarum sieboldii v... [more]
RZC73970.12.130e-2189.58hypothetical protein C5167_049455 [Papaver somnife... [more]
AZZ73141.12.680e-2186.00ribosomal protein S12 [Rheum officinale] >AZZ73209... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..48
e-value: 3.3E-11
score: 44.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_46contigBoleracea_scaffold_46:115971..116789 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC46t61009H-RBolSC46t61009H-RBrassica oleracea HDEMmRNABoleracea_scaffold_46 115971..116789 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC46t61009H-R-P ID=BolSC46t61009H-R-P|Name=BolSC46t61009H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=63bp
MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFF
LYIGIIRLVIND.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0015935small ribosomal subunit
GO:0009507chloroplast