BolSC46t61009H-R-P (polypeptide) Brassica oleracea HDEM
Overview
Homology
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: CAF2058837.1 (unnamed protein product [Brassica napus] >VDD22403.1 unnamed protein product [Brassica rapa] >VDD65250.1 unnamed protein product [Brassica oleracea] >CAF2058871.1 unnamed protein product [Brassica napus] >CDY46565.1 BnaA08g02040D [Brassica napus]) HSP 1 Score: 128 bits (322), Expect = 2.210e-37 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: CAF1857235.1 (unnamed protein product [Brassica napus]) HSP 1 Score: 118 bits (296), Expect = 2.060e-33 Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62 MPTIKQLIRNTR PI+N TKSPALR CPQRRGTCT+VYVRLSSKSHWNFFLYIGIIRLVIND Sbjct: 1 MPTIKQLIRNTRHPIQNFTKSPALRECPQRRGTCTQVYVRLSSKSHWNFFLYIGIIRLVIND 62
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: VDD65512.1 (unnamed protein product [Brassica oleracea]) HSP 1 Score: 115 bits (288), Expect = 3.720e-32 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLS--SKSHWNFF-LYIGIIRLVIND 62 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL +KSHWNFF LYIGIIRLVIND Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVRVAKSHWNFFFLYIGIIRLVIND 65
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: VDD25602.1 (unnamed protein product [Brassica rapa]) HSP 1 Score: 112 bits (279), Expect = 8.120e-31 Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVR++ KS FFLYIGIIRLVIND Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRVAKKSIGIFFLYIGIIRLVIND 62
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: CAF1908361.1 (unnamed protein product [Brassica napus]) HSP 1 Score: 102 bits (253), Expect = 7.360e-27 Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFFLYIGIIRLVIND 62 MPTIKQL+RNTRQPIRNVT SPALRGCPQRRGTCTRVYVR++ K+ FFLYIGIIRLVIND Sbjct: 1 MPTIKQLMRNTRQPIRNVTISPALRGCPQRRGTCTRVYVRVA-KAIGIFFLYIGIIRLVIND 61
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: VDD24609.1 (unnamed protein product [Brassica rapa]) HSP 1 Score: 96.3 bits (238), Expect = 1.470e-24 Identity = 55/65 (84.62%), Postives = 55/65 (84.62%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRG-CPQRRGT--CTRVYVRLSSKSHWNFFLYIGIIRLVIND 62 MPTIKQLIRNTRQPIRNVTKSPALRG CPQRRGT CTRVYVRL FFLYIGIIRLVIND Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGGCPQRRGTGTCTRVYVRLQKPF---FFLYIGIIRLVIND 62
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: PIA35000.1 (hypothetical protein AQUCO_03700331v1 [Aquilegia coerulea]) HSP 1 Score: 95.1 bits (235), Expect = 7.030e-24 Identity = 52/78 (66.67%), Postives = 54/78 (69.23%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRV-----------------YVRLSSKSHWNFFLYIGIIRLVIN 61 MPTIKQLIRNTRQPI+NVTKSPAL GCPQRRGTCTRV + SSKSHWNFFLY G IR VIN Sbjct: 1 MPTIKQLIRNTRQPIKNVTKSPALWGCPQRRGTCTRVVSITFLFGVKCLEKNSGWEGHSSKSHWNFFLYTGRIRFVIN 78
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: AVV66134.1 (ribosomal protein S12, partial [Asarum sieboldii var. sieboldii] >AVV66160.1 ribosomal protein S12, partial [Asarum epigynum] >AVV66254.1 ribosomal protein S12, partial [Asarum megacalyx]) HSP 1 Score: 89.0 bits (219), Expect = 8.510e-22 Identity = 43/48 (89.58%), Postives = 43/48 (89.58%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWN 48 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL WN Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMSWN 48
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: RZC73970.1 (hypothetical protein C5167_049455 [Papaver somniferum]) HSP 1 Score: 89.7 bits (221), Expect = 2.130e-21 Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWN 48 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL +WN Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMNWN 48
BLAST of BolSC46t61009H-R vs. GenBank_protein
Match: AZZ73141.1 (ribosomal protein S12 [Rheum officinale] >AZZ73209.1 ribosomal protein S12 [Rheum tanguticum]) HSP 1 Score: 87.8 bits (216), Expect = 2.680e-21 Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0 Query: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLSSKSHWNFF 50 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRL +W F Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLVQIMNWANF 50 The following BLAST results are available for this feature:
BLAST of BolSC46t61009H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR) Total hits: 20
Pagesback to topGO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >BolSC46t61009H-R-P ID=BolSC46t61009H-R-P|Name=BolSC46t61009H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=63bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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