BolSC45t60934H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC45t60934H-R
Unique NameBolSC45t60934H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length60
Homology
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: VDD65706.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 110 bits (274), Expect = 3.840e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSSCRRYHETT 59
            MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSSCRRYHETT
Sbjct:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSSCRRYHETT 59
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: VDD24681.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 88.2 bits (217), Expect = 5.340e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQA 51
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: CDY21188.1 (BnaA01g34190D [Brassica napus] >VDD25063.1 unnamed protein product [Brassica oleracea] >VDD26413.1 unnamed protein product [Brassica rapa] >VDD26485.1 unnamed protein product [Brassica rapa] >VDD65342.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 88.2 bits (217), Expect = 5.340e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQA 51
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: TYJ10254.1 (hypothetical protein E1A91_A11G195000v1 [Gossypium mustelinum])

HSP 1 Score: 87.8 bits (216), Expect = 7.580e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMNPL+SAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:    1 MIVSLTISLFWCEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQA 51
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: AXY96773.1 (ATP synthase CF0 subunit III, partial [Abelmoschus esculentus] >KAB1670087.1 hypothetical protein ES319_1Z200800v1 [Gossypium barbadense] >KAF8100573.1 hypothetical protein N665_0221s0050 [Sinapis alba])

HSP 1 Score: 87.8 bits (216), Expect = 7.580e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMNPL+SAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:    1 MIVSLTISLFWCEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQA 51
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: KAB2097077.1 (hypothetical protein ES319_A01G146800v1 [Gossypium barbadense] >KAG4214792.1 hypothetical protein ERO13_A01G140039v2 [Gossypium hirsutum] >TYI43389.1 hypothetical protein ES332_A01G166500v1 [Gossypium tomentosum])

HSP 1 Score: 85.9 bits (211), Expect = 4.370e-20
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMNPL+SAASVIAAGLA+GLASIGPGVGQGTA G +
Sbjct:    1 MIVSLTISLFWCEELIMNPLISAASVIAAGLAIGLASIGPGVGQGTAVGQA 51
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: TYG94650.1 (hypothetical protein ES288_A11G205200v1 [Gossypium darwinii])

HSP 1 Score: 84.7 bits (208), Expect = 1.250e-19
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMN L+SAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:    1 MIVSLTISLFWCEELIMNALISAASVIAAGLAVGLASIGPGVGQGTAAGQA 51
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: YP_009341764.1 (ATP synthase CF0 subunit III [Castanopsis concinna] >ALN96546.1 ATP synthase CF0 subunit III [Castanopsis concinna])

HSP 1 Score: 84.3 bits (207), Expect = 1.980e-19
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            +IVSLTI LFWCEELIMNPL+SAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:    5 LIVSLTIYLFWCEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQA 55
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: KAB5511204.1 (hypothetical protein DKX38_030129 [Salix brachista])

HSP 1 Score: 85.1 bits (209), Expect = 2.070e-19
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            +IVSLTIS FWCEELIMNPL+SAASVIAAGLAVGLASIGPGVGQGTAAG +
Sbjct:   33 LIVSLTISFFWCEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQA 83
[Close]
BLAST of BolSC45t60934H-R vs. GenBank_protein
Match: TYI01485.1 (hypothetical protein ES332_A11G204000v1 [Gossypium tomentosum])

HSP 1 Score: 84.0 bits (206), Expect = 2.520e-19
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0 
Query:    1 MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGSS 51
            MIVSLTISLFWCEELIMNPL+ AASVIAAGLAVGLASIGPGVGQGT AG +
Sbjct:    1 MIVSLTISLFWCEELIMNPLIFAASVIAAGLAVGLASIGPGVGQGTTAGQA 51
The following BLAST results are available for this feature:
BLAST of BolSC45t60934H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65706.13.840e-30100.00unnamed protein product [Brassica oleracea][more]
VDD24681.15.340e-2196.08unnamed protein product, partial [Brassica rapa][more]
CDY21188.15.340e-2196.08BnaA01g34190D [Brassica napus] >VDD25063.1 unnamed... [more]
TYJ10254.17.580e-2194.12hypothetical protein E1A91_A11G195000v1 [Gossypium... [more]
AXY96773.17.580e-2194.12ATP synthase CF0 subunit III, partial [Abelmoschus... [more]
KAB2097077.14.370e-2090.20hypothetical protein ES319_A01G146800v1 [Gossypium... [more]
TYG94650.11.250e-1992.16hypothetical protein ES288_A11G205200v1 [Gossypium... [more]
YP_009341764.11.980e-1990.20ATP synthase CF0 subunit III [Castanopsis concinna... [more]
KAB5511204.12.070e-1990.20hypothetical protein DKX38_030129 [Salix brachista... [more]
TYI01485.12.520e-1990.20hypothetical protein ES332_A11G204000v1 [Gossypium... [more]

Pages

back to top
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0008289 lipid binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 27..53
e-value: 1.7E-6
score: 28.3
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10F1F0 ATP synthase subunit Ccoord: 13..57
e-value: 8.2E-12
score: 47.0
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 17..49
NoneNo IPR availablePANTHERPTHR10031:SF41ATPASE, F0 COMPLEX, SUBUNIT C, V-ATPASE PROTEOLIPID SUBUNIT C-LIKE DOMAIN PROTEIN-RELATEDcoord: 17..49
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..59
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 19..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_45contigBoleracea_scaffold_45:138241..138420 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC45t60934H-RBolSC45t60934H-RBrassica oleracea HDEMmRNABoleracea_scaffold_45 138241..138420 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC45t60934H-R-P ID=BolSC45t60934H-R-P|Name=BolSC45t60934H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=60bp
MIVSLTISLFWCEELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGS
SCRRYHETT.
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0009535chloroplast thylakoid membrane
GO:0016021integral component of membrane
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
Vocabulary: Molecular Function
TermDefinition
GO:0015078proton transmembrane transporter activity
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0008289lipid binding
Vocabulary: Biological Process
TermDefinition
GO:1902600proton transmembrane transport
GO:0015986ATP synthesis coupled proton transport
Vocabulary: INTERPRO
TermDefinition
IPR035921F/V-ATP_Csub_sf
IPR000454ATP_synth_F0_csu
IPR038662ATP_synth_F0_csu_sf
IPR002379ATPase_proteolipid_c-like_dom