BolSC45t60913H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC45t60913H-R
Unique NameBolSC45t60913H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length58
Homology
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: VDD65685.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 107 bits (267), Expect = 3.920e-29
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNKINKKH 57
            MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNKINKKH
Sbjct:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNKINKKH 57
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_009540680.1 (ribosomal protein L32 [Ricotia lunaria] >AYQ22683.1 ribosomal protein L32 [Ricotia lunaria])

HSP 1 Score: 84.0 bits (206), Expect = 7.140e-20
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNK 52
            MAVPKKRTSISKKRIRK KN KRKGYWTSLKAFSLGKSLSTGNSKSFFL  K
Sbjct:    1 MAVPKKRTSISKKRIRK-KNWKRKGYWTSLKAFSLGKSLSTGNSKSFFLQKK 51
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_009899827.1 (ribosomal protein L32 [Noccaea caerulescens] >QKK46722.1 ribosomal protein L32 [Noccaea caerulescens] >QKK48358.1 ribosomal protein L32 [Pseudoturritis turrita] >QKM79347.1 ribosomal protein L32 [Clausia trichosepala])

HSP 1 Score: 82.8 bits (203), Expect = 2.050e-19
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNK 52
            MAVPKKRTSISKKRIRK KN KRKGYWTSLKAFSLGKSLSTGNSKSFF+  K
Sbjct:    1 MAVPKKRTSISKKRIRK-KNWKRKGYWTSLKAFSLGKSLSTGNSKSFFVQQK 51
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_001123248.1 (ribosomal protein L32 [Arabis hirsuta] >YP_009478024.1 ribosomal protein L32 [Arabis flagellosa] >YP_009827403.1 ribosomal protein L32 [Arabis scabra] >YP_009897600.1 ribosomal protein L32 [Iodanthus pinnatifidus] >YP_010026522.1 ribosomal protein L32 [Arabis paniculata] >A4QK68.1 RecName: Full=50S ribosomal protein L32, chloroplastic [Arabis hirsuta] >ARI46784.1 ribosomal protein L32 [Arabis stelleri subsp. japonica] >QKK51304.1 ribosomal protein L32 [Vella lucentina] >VDD31486.1 unnamed protein product [Brassica oleracea] >BBC42888.1 ribosomal protein L32 [Arabis hirsuta var. nipponica] >QIV22565.1 ribosomal protein L32 [Arabis scabra])

HSP 1 Score: 82.0 bits (201), Expect = 4.140e-19
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFL 49
            MAVPKKRTSISKKRIRK KN KRKGYWTSLKAFSLGKSLSTGNSKSFF+
Sbjct:    1 MAVPKKRTSISKKRIRK-KNWKRKGYWTSLKAFSLGKSLSTGNSKSFFV 48
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_009891389.1 (ribosomal protein L32 [Aphragmus nepalensis] >QKK37762.1 ribosomal protein L32 [Aphragmus nepalensis])

HSP 1 Score: 82.0 bits (201), Expect = 4.670e-19
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFL 49
            MAVPKKRTSISKKRIRK KN KRKGYWTSLKAFSLGKSLSTGNSKSFF+
Sbjct:    1 MAVPKKRTSISKKRIRK-KNWKRKGYWTSLKAFSLGKSLSTGNSKSFFV 48
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_009892854.1 (ribosomal protein L32 [Biscutella vincentina] >QKK39227.1 ribosomal protein L32 [Biscutella vincentina])

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-18
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFL 49
            MAVPKKRTSISKKRIRK K LKRKGYWTSLKAFSLGKSLSTGNSKSFF+
Sbjct:    1 MAVPKKRTSISKKRIRK-KILKRKGYWTSLKAFSLGKSLSTGNSKSFFV 48
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: APS85129.1 (ribosomal protein L32 [Orychophragmus zhongtiaoshanus])

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-18
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNK 52
            MAVPKKRTSISKKRIRK KN KRKGYWTSLKA SLGKSLSTGNSKSFF+  K
Sbjct:    1 MAVPKKRTSISKKRIRK-KNWKRKGYWTSLKAISLGKSLSTGNSKSFFVQQK 51
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_009540595.1 (ribosomal protein L32 [Ricotia isatoides] >AYQ22598.1 ribosomal protein L32 [Ricotia isatoides] >AYQ22769.1 ribosomal protein L32 [Ricotia isatoides])

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-18
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNK 52
            MAVPKKRTSISKKRIRK K  KRKGYWTSLKAFSLGKSLSTGNSKSFFL  K
Sbjct:    1 MAVPKKRTSISKKRIRK-KIWKRKGYWTSLKAFSLGKSLSTGNSKSFFLQQK 51
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: QKK48617.1 (ribosomal protein L32 [Ricotia lunaria])

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-18
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLYNK 52
            MAVPKKRTSISKKRIRK K  KRKGYWTSLKAFSLGKSLSTGNSKSFFL  K
Sbjct:    1 MAVPKKRTSISKKRIRK-KIWKRKGYWTSLKAFSLGKSLSTGNSKSFFLQKK 51
[Close]
BLAST of BolSC45t60913H-R vs. GenBank_protein
Match: YP_009898109.1 (ribosomal protein L32 [Ladakiella klimesii] >QKK44830.1 ribosomal protein L32 [Ladakiella klimesii])

HSP 1 Score: 80.1 bits (196), Expect = 2.400e-18
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0 
Query:    1 MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFL 49
            MAVPKKRTSISKKRIRK K+ KRKGYWTSLKAFSLGKSLSTGNSKSFF+
Sbjct:    1 MAVPKKRTSISKKRIRK-KSWKRKGYWTSLKAFSLGKSLSTGNSKSFFV 48
The following BLAST results are available for this feature:
BLAST of BolSC45t60913H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65685.13.920e-29100.00unnamed protein product [Brassica oleracea][more]
YP_009540680.17.140e-2092.31ribosomal protein L32 [Ricotia lunaria] >AYQ22683.... [more]
YP_009899827.12.050e-1990.38ribosomal protein L32 [Noccaea caerulescens] >QKK4... [more]
YP_001123248.14.140e-1993.88ribosomal protein L32 [Arabis hirsuta] >YP_0094780... [more]
YP_009891389.14.670e-1993.88ribosomal protein L32 [Aphragmus nepalensis] >QKK3... [more]
YP_009892854.11.190e-1893.88ribosomal protein L32 [Biscutella vincentina] >QKK... [more]
APS85129.11.690e-1888.46ribosomal protein L32 [Orychophragmus zhongtiaosha... [more]
YP_009540595.11.690e-1890.38ribosomal protein L32 [Ricotia isatoides] >AYQ2259... [more]
QKK48617.11.690e-1890.38ribosomal protein L32 [Ricotia lunaria][more]
YP_009898109.12.400e-1891.84ribosomal protein L32 [Ladakiella klimesii] >QKK44... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044958Ribosomal protein L32p, plant/cyanobacteria typePANTHERPTHR3608350S RIBOSOMAL PROTEIN L32, CHLOROPLASTICcoord: 1..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 36..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..57
IPR002677Ribosomal protein L32pHAMAPMF_00340Ribosomal_L32coord: 1..54
score: 12.881298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_45contigBoleracea_scaffold_45:95733..95906 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC45t60913H-RBolSC45t60913H-RBrassica oleracea HDEMmRNABoleracea_scaffold_45 95733..95906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC45t60913H-R-P ID=BolSC45t60913H-R-P|Name=BolSC45t60913H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=58bp
MAVPKKRTSISKKRIRKKKNLKRKGYWTSLKAFSLGKSLSTGNSKSFFLY
NKINKKH.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002677Ribosomal_L32p
IPR044958Ribosomal_L32p_plant/cyanobact
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0009507chloroplast