BolC9t60197H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t60197H-R
Unique Name	BolC9t60197H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	318

Homology

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: KAG2245101.1 (hypothetical protein Bca52824_093036 [Brassica carinata] >VDD34874.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 444 bits (1142), Expect = 3.680e-154
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0

Query:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF
Sbjct:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: KAF3502142.1 (hypothetical protein F2Q69_00045890 [Brassica cretica])

HSP 1 Score: 442 bits (1136), Expect = 3.010e-153
Identity = 315/317 (99.37%), Postives = 317/317 (100.00%), Query Frame = 0

Query:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKN+VTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAG+TLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF
Sbjct:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNIVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGSTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: XP_013610158.1 (PREDICTED: trihelix transcription factor GT-3a-like [Brassica oleracea var. oleracea] >XP_013732747.1 trihelix transcription factor GT-3a [Brassica napus] >CAF1793336.1 unnamed protein product [Brassica napus] >CDY10496.1 BnaCnng03970D [Brassica napus])

HSP 1 Score: 438 bits (1127), Expect = 7.050e-152
Identity = 315/317 (99.37%), Postives = 316/317 (99.68%), Query Frame = 0

Query:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAG+TLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDIL SKLNKDKNDDQHQGF
Sbjct:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGSTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILLSKLNKDKNDDQHQGF 317

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: KAG2262367.1 (hypothetical protein Bca52824_069446 [Brassica carinata])

HSP 1 Score: 388 bits (996), Expect = 5.810e-132
Identity = 290/321 (90.34%), Postives = 299/321 (93.15%), Query Frame = 0

Query:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEK---VITTSTCTNPRKRAKKGKGITGST-KAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSI+TARMQRVLW+EATEASTSS     XXXXXXXXXXXXEEPNQSINEEL+AFVET EK   VITTST TNPRKRAKKGKGITGS+ KAETAG+TLKEILEDFMRQTVKMEKEWR AWEMKERERE  XXXXXXXXXXXXXXXXXXXXXXXX E+ERRLREEARAQKRDT+I IL +KLN+D NDDQHQGF
Sbjct:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIYTARMQRVLWTEATEASTSSXXXXXXXXXXXXXXXXXEEPNQSINEELLAFVETHEKDAQVITTSTTTNPRKRAKKGKGITGSSSKAETAGSTLKEILEDFMRQTVKMEKEWRGAWEMKEREREKRXXXXXXXXXXXXXXXXXXXXXXXXREDERRLREEARAQKRDTLISILLNKLNRDHNDDQHQGF 317

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: CAA7061830.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 369 bits (947), Expect = 1.610e-124
Identity = 274/321 (85.36%), Postives = 292/321 (90.97%), Query Frame = 0

Query:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEK----VITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GERIPQWS+EETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGF R+AEQCKSKWKNLVTRYKACETTEPEAIRQQFP+YNEIQSIF+ARMQR+LWSEATE STSS     XXXXXXXXXXX EEPNQ INEEL++FVET +K    VITTST TNPRKRAKKGKG+TGSTKAETAG T+KE+LE+FMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXX   E ERR REEARAQKRDT+ID L +KLN+D +D+ H+GF
Sbjct:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GERIPQWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETTEPEAIRQQFPFYNEIQSIFSARMQRMLWSEATEPSTSSXXXXXXXXXXXXXXXXVEEPNQDINEELLSFVETHKKETEEVITTSTSTNPRKRAKKGKGLTGSTKAETAGGTVKEMLEEFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXMEREEERRSREEARAQKRDTLIDALLNKLNRDHDDNHHRGF 317

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: KAG5402668.1 (hypothetical protein IGI04_008787 [Brassica rapa subsp. trilocularis] >RID67829.1 hypothetical protein BRARA_C00034 [Brassica rapa])

HSP 1 Score: 364 bits (934), Expect = 1.680e-122
Identity = 227/279 (81.36%), Postives = 245/279 (87.81%), Query Frame = 0

Query:   43 GERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEK---VITTSTCTNPRKRAKKGKGI-TGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            GERIPQWS+EETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFAR+AEQCKSKWKNLVTRYKACETTEPEA RQQFP+Y+EIQSIFTARMQR LWSE TE STSSK    XXXXXXXXX   EEPNQ INEEL++F+ET +K   VITTST T+PRKR KKGKGI TGSTKAETAG+TLKEILEDFMRQTVKMEKEW D+WEMKERERE    XXXXX    XXXXXXXXXXX   E+ERRLREEARA+KRDT+ID L +KLN+D+NDD +QGF
Sbjct:   42 GERIPQWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEASRQQFPFYSEIQSIFTARMQRHLWSEPTEGSTSSKXXXXXXXXXXXXXDQVEEPNQDINEELLSFIETDKKEAEVITTSTSTDPRKRVKKGKGIFTGSTKAETAGSTLKEILEDFMRQTVKMEKEWIDSWEMKEREREKREHXXXXXMADLXXXXXXXXXXXMEREDERRLREEARARKRDTLIDALLNKLNRDQNDDHYQGF 320

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: XP_006398620.1 (trihelix transcription factor GT-3a [Eutrema salsugineum] >ESQ40073.1 hypothetical protein EUTSA_v10015815mg [Eutrema salsugineum])

HSP 1 Score: 364 bits (934), Expect = 1.740e-122
Identity = 240/279 (86.02%), Postives = 255/279 (91.40%), Query Frame = 0

Query:   44 ERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQ-QFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXX-EEPNQSINEELVAFVETQEK---VITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            ERIPQWS+EETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGF R+AEQCKSKWKNLVTRYKACETTEPEAIRQ QFP+YNEIQSIFTARMQR+LWS  TE STSSKRK+   XXXXXXXXX  EEPNQ INEEL++FVET +K   VITTST TNPRKRAKKGKG+  STKAETAG+TLKEILE+FMRQTVKME EWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXE ERRLREEARAQKRDT+ID L +KLN+D +DD HQGF
Sbjct:   43 ERIPQWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETTEPEAIRQGQFPFYNEIQSIFTARMQRMLWSGTTEPSTSSKRKHQFSXXXXXXXXXDVEEPNQDINEELLSFVETHKKESEVITTSTSTNPRKRAKKGKGVACSTKAETAGSTLKEILEEFMRQTVKMENEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXEEERRLREEARAQKRDTLIDALLNKLNRDHDDDDHQGF 321

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: XP_018445127.1 (PREDICTED: trihelix transcription factor GT-3a-like [Raphanus sativus])

HSP 1 Score: 361 bits (926), Expect = 2.020e-121
Identity = 267/319 (83.70%), Postives = 278/319 (87.15%), Query Frame = 0

Query:    1 MDQRNPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXX--EEPNQSINEELVAFVETQEKVITTSTCTNPRKRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            MDQRNPFH XXXXXXXXXXXXXXXXXXXXXXXXXXX      GERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTR+KACETTEPEA RQQFPYYNEIQSIFTAR+QRVLWSEATE STSS     XXXXXXXXXXX   EEPNQSIN+EL+AFVET +K     T TNPRKRAKKGKGITGS  +  AG+TL+EILEDFMRQTVKMEKEWRDAWEM ER RE   XXXXX    XXXXXXXXXXXXXX E+ERRLREEARAQKRDT+I IL +KLNKD NDDQHQGF
Sbjct:    1 MDQRNPFHHXXXXXXXXXXXXXXXXXXXXXXXXXXX------GERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRFKACETTEPEATRQQFPYYNEIQSIFTARIQRVLWSEATEPSTSSXXXXXXXXXXXXXXXXDTHEEPNQSINDELLAFVETHKKDAQVITTTNPRKRAKKGKGITGS--SSKAGSTLREILEDFMRQTVKMEKEWRDAWEMNERAREKREXXXXXRMAEXXXXXXXXXXXXXXREDERRLREEARAQKRDTLIGILLNKLNKDNNDDQHQGF 311

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BLAST of BolC9t60197H-R vs. GenBank_protein
Match: KAF3512192.1 (hypothetical protein F2Q69_00000050 [Brassica cretica] >KAF3542752.1 hypothetical protein DY000_02000036 [Brassica cretica])

HSP 1 Score: 361 bits (926), Expect = 2.660e-121
Identity = 233/278 (83.81%), Postives = 251/278 (90.29%), Query Frame = 0

Query:   44 ERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEK---VITTSTCTNPRKRAKKGKGI-TGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            ERIPQWS+EETKELLGIRE+LDQTFMETKRNKLLWEVVAAKMADKGFAR+AEQCKSKWKNLVTRYKACETTEPEAIRQQFP+Y+EIQSIFTARMQR LWSEATE STSSK    XXXXXXXXXX  EEPNQ INEEL++F+ET +K   VITTST T+PRKR KKGKGI TGSTKAETAG+T KEILEDF+RQTVKMEKEW DAWEMKERERE XXXXXXXXXXXXXXXXXXXXXXX   E+ERRLREEAR +KRDT+ID L +KLN+D NDD +QGF
Sbjct:   42 ERIPQWSIEETKELLGIREDLDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEAIRQQFPFYSEIQSIFTARMQRNLWSEATEGSTSSKXXXXXXXXXXXXXXQVEEPNQDINEELLSFIETDKKKAEVITTSTSTDPRKRVKKGKGIFTGSTKAETAGSTFKEILEDFLRQTVKMEKEWIDAWEMKEREREKXXXXXXXXXXXXXXXXXXXXXXXMEREDERRLREEARGRKRDTLIDALLNKLNRDHNDDHYQGF 319

[Close]

BLAST of BolC9t60197H-R vs. GenBank_protein
Match: XP_013626801.1 (PREDICTED: trihelix transcription factor GT-3a-like [Brassica oleracea var. oleracea] >XP_013730093.1 trihelix transcription factor GT-3a [Brassica napus] >KAG2334915.1 hypothetical protein Bca52824_006095 [Brassica carinata] >CAF1696171.1 unnamed protein product [Brassica napus] >VDC84922.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 361 bits (926), Expect = 2.660e-121
Identity = 233/278 (83.81%), Postives = 251/278 (90.29%), Query Frame = 0

Query:   44 ERIPQWSLEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSKWKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEASTSSKRKNHXXXXXXXXXXXXEEPNQSINEELVAFVETQEK---VITTSTCTNPRKRAKKGKGI-TGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKEREREXXXXXXXXXXXXXXXXXXXXXXXXXXXENERRLREEARAQKRDTIIDILHSKLNKDKNDDQHQGF 317
            ERIPQWS+EETKELLGIRE+LDQTFMETKRNKLLWEVVAAKMADKGFAR+AEQCKSKWKNLVTRYKACETTEPEAIRQQFP+Y+EIQSIFTARMQR LWSEATE STSSK    XXXXXXXXXX  EEPNQ INEEL++F+ET +K   VITTST T+PRKR KKGKGI TGSTKAETAG+T KEILEDF+RQTVKMEKEW DAWEMKERERE XXXXXXXXXXXXXXXXXXXXXXX   E+ERRLREEAR +KRDT+ID L +KLN+D NDD +QGF
Sbjct:   42 ERIPQWSIEETKELLGIREDLDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEAIRQQFPFYSEIQSIFTARMQRNLWSEATEGSTSSKXXXXXXXXXXXXXXQVEEPNQDINEELLSFIETDKKKAEVITTSTSTDPRKRVKKGKGIFTGSTKAETAGSTFKEILEDFLRQTVKMEKEWIDAWEMKEREREKXXXXXXXXXXXXXXXXXXXXXXXMEREDERRLREEARGRKRDTLIDALLNKLNRDHNDDHYQGF 319

The following BLAST results are available for this feature:

BLAST of BolC9t60197H-R vs. GenBank_protein

BLAST of BolC9t60197H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
KAG2245101.1	3.680e-154	100.00	hypothetical protein Bca52824_093036 [Brassica car...	[more]
KAF3502142.1	3.010e-153	99.37	hypothetical protein F2Q69_00045890 [Brassica cret...	[more]
XP_013610158.1	7.050e-152	99.37	PREDICTED: trihelix transcription factor GT-3a-lik...	[more]
KAG2262367.1	5.810e-132	90.34	hypothetical protein Bca52824_069446 [Brassica car...	[more]
CAA7061830.1	1.610e-124	85.36	unnamed protein product [Microthlaspi erraticum]	[more]
KAG5402668.1	1.680e-122	81.36	hypothetical protein IGI04_008787 [Brassica rapa s...	[more]
XP_006398620.1	1.740e-122	86.02	trihelix transcription factor GT-3a [Eutrema salsu...	[more]
XP_018445127.1	2.020e-121	83.70	PREDICTED: trihelix transcription factor GT-3a-lik...	[more]
KAF3512192.1	2.660e-121	83.81	hypothetical protein F2Q69_00000050 [Brassica cret...	[more]
XP_013626801.1	2.660e-121	83.81	PREDICTED: trihelix transcription factor GT-3a-lik...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0000976	transcription regulatory region sequence-specific DNA binding

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 248..282
None	No IPR available	GENE3D	1.10.10.60		coord: 49..110 e-value: 3.6E-19 score: 70.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..175
None	No IPR available	PANTHER	PTHR21654	FAMILY NOT NAMED	coord: 1..312
None	No IPR available	CDD	cd12203	GT1	coord: 47..109 e-value: 6.26727E-22 score: 85.4095
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 45..107 e-value: 7.7E-4 score: 28.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 49..105 score: 8.1417
IPR044822	Myb/SANT-like DNA-binding domain 4	PFAM	PF13837	Myb_DNA-bind_4	coord: 48..132 e-value: 6.2E-20 score: 71.4
IPR027759	Trihelix transcription factor GT3	PANTHER	PTHR21654:SF79	BNAA03G00390D PROTEIN	coord: 1..312
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 47..121

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:63172022..63174569 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t60197H-R	BolC9t60197H-R	Brassica oleracea HDEM	mRNA	C9 63172022..63174569 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t60197H-R-P ID=BolC9t60197H-R-P|Name=BolC9t60197H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=318bp
MDQRNPFHHHHHHHHQHHHLIQQQQLPPPPQSTTAAMDPGGGGERIPQWS
LEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARTAEQCKSK
WKNLVTRYKACETTEPEAIRQQFPYYNEIQSIFTARMQRVLWSEATEAST
SSKRKNHQFSSDEEEEEEAEEPNQSINEELVAFVETQEKVITTSTCTNPR
KRAKKGKGITGSTKAETAGTTLKEILEDFMRQTVKMEKEWRDAWEMKERE
REKRETEWRRRMSELEEERSATERRWMERENERRLREEARAQKRDTIIDI
LHSKLNKDKNDDQHQGF.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0000976	transcription regulatory region sequence-specific DNA binding
GO:0042802	identical protein binding
GO:0003700	DNA-binding transcription factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR027759	Trihelix_TF_GT3
IPR044822	Myb_DNA-bind_4
IPR001005	SANT/Myb

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Orthology

View orthology data for BolC9t60197H-R-P