BolC9t59905H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59905H-R
Unique Name	BolC9t59905H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	181

Homology

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: XP_013737848.1 (RING-H2 finger protein ATL73-like [Brassica napus] >KAG2262627.1 hypothetical protein Bca52824_069706 [Brassica carinata] >VDD34582.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 271 bits (692), Expect = 4.430e-90
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA
Sbjct:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: CAF1790460.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 268 bits (686), Expect = 3.630e-89
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQ LADGFLRDDDGTVAA
Sbjct:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQILADGFLRDDDGTVAA 180

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: XP_013608896.1 (PREDICTED: RING-H2 finger protein ATL73 [Brassica oleracea var. oleracea])

HSP 1 Score: 261 bits (668), Expect = 2.000e-86
Identity = 168/180 (93.33%), Postives = 169/180 (93.89%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            MGRFLLETQASSTISATDANPRTLGGSNSD KNM+TLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         PKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFL DDDGTVAA
Sbjct:    1 MGRFLLETQASSTISATDANPRTLGGSNSDAKNMATLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHSNPNANQPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLLDDDGTVAA 180

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: XP_009122137.1 (RING-H2 finger protein ATL73 [Brassica rapa] >RID42815.1 hypothetical protein BRARA_J02673 [Brassica rapa])

HSP 1 Score: 256 bits (654), Expect = 2.710e-84
Identity = 168/180 (93.33%), Postives = 172/180 (95.56%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            MGRFLLETQASSTISATDANPRTLGGSNS+ K+M TLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     VPKGIKKRDLKRIPV SYSSELKTKATECLICLGEFV+GEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILH+TLADGFLRDDDGTVAA
Sbjct:    1 MGRFLLETQASSTISATDANPRTLGGSNSNTKDMDTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNANVPKGIKKRDLKRIPVDSYSSELKTKATECLICLGEFVDGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHRTLADGFLRDDDGTVAA 180

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: XP_013715597.1 (RING-H2 finger protein ATL73 [Brassica napus] >CAF2359618.1 unnamed protein product [Brassica napus] >VDD20943.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 253 bits (646), Expect = 4.470e-83
Identity = 167/180 (92.78%), Postives = 171/180 (95.00%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            MGRFLLETQASSTISATDANPRTLGGSNS+ K+M TLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     V KGIKKRDLKRIPV SYSSELKTKATECLICLGEFV+GEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILH+TLADGFLRDDDGTVAA
Sbjct:    1 MGRFLLETQASSTISATDANPRTLGGSNSNTKDMDTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNANVAKGIKKRDLKRIPVDSYSSELKTKATECLICLGEFVDGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHRTLADGFLRDDDGTVAA 180

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: XP_018442135.1 (PREDICTED: RING-H2 finger protein ATL73-like [Raphanus sativus] >XP_018442141.1 PREDICTED: RING-H2 finger protein ATL73-like [Raphanus sativus])

HSP 1 Score: 236 bits (602), Expect = 1.880e-76
Identity = 163/180 (90.56%), Postives = 168/180 (93.33%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            MGRFLLETQA+STISATDAN      SN D+KNM+TL+TNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V KGIKKRDLKRIPV SYSSELKTKATECLICLG+FVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA
Sbjct:    1 MGRFLLETQATSTISATDANR-----SNGDNKNMATLETNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANVAKGIKKRDLKRIPVDSYSSELKTKATECLICLGDFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 175

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: VVB13310.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 202 bits (513), Expect = 7.110e-63
Identity = 136/179 (75.98%), Postives = 149/179 (83.24%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVA 179
            MGR LLETQA+ T+SATDANPRTLG S++++ N++++DTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXX             V  GIK + LKRIPV SYSSELK KATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWL SHSSCPTCRQ L+ HQT ADG  RDDD +VA
Sbjct:    1 MGRILLETQAAPTLSATDANPRTLGVSSNNNNNVASMDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXPNQDPTDTNAN--VSNGIKNQALKRIPVDSYSSELKMKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLVEHQTPADGSWRDDDVSVA 177

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: CAE6086997.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 200 bits (509), Expect = 2.880e-62
Identity = 141/175 (80.57%), Postives = 152/175 (86.86%), Query Frame = 0

Query:    1 MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDD 175
            M RFLLETQA+ TISATDANPRTLG S S++KN++++DT+MVI+LAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      V KGIKKR LKRIPV SYS ELK KATECLICLGEFVEGE VRVLPKCNHGFHVKCIDTWL SHSSCPTCRQ L+ HQT A+G  R DD
Sbjct:    1 MARFLLETQATPTISATDANPRTLGDSVSNNKNIASMDTHMVIVLAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNANVNVAKGIKKRALKRIPVDSYSLELKMKATECLICLGEFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGDD 175

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BLAST of BolC9t59905H-R vs. GenBank_protein
Match: KAF2537734.1 (hypothetical protein F2Q68_00023300 [Brassica cretica] >KAF2575256.1 hypothetical protein F2Q70_00006613 [Brassica cretica])

HSP 1 Score: 197 bits (501), Expect = 1.380e-61
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0

Query:   87 VPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            +PKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFV+GEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA
Sbjct:   47 LPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVDGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 140

[Close]

BLAST of BolC9t59905H-R vs. GenBank_protein
Match: KAF3500088.1 (hypothetical protein F2Q69_00045538 [Brassica cretica])

HSP 1 Score: 195 bits (496), Expect = 7.950e-61
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0

Query:   87 VPKGIKKRDLKRIPVYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 180
            VPKG+KKRDLKRIPV SYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA
Sbjct:   47 VPKGVKKRDLKRIPVDSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSHSSCPTCRQPLILHQTLADGFLRDDDGTVAA 140

The following BLAST results are available for this feature:

BLAST of BolC9t59905H-R vs. GenBank_protein

BLAST of BolC9t59905H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013737848.1	4.430e-90	100.00	RING-H2 finger protein ATL73-like [Brassica napus]...	[more]
CAF1790460.1	3.630e-89	99.44	unnamed protein product [Brassica napus]	[more]
XP_013608896.1	2.000e-86	93.33	PREDICTED: RING-H2 finger protein ATL73 [Brassica ...	[more]
XP_009122137.1	2.710e-84	93.33	RING-H2 finger protein ATL73 [Brassica rapa] >RID4...	[more]
XP_013715597.1	4.470e-83	92.78	RING-H2 finger protein ATL73 [Brassica napus] >CAF...	[more]
XP_018442135.1	1.880e-76	90.56	PREDICTED: RING-H2 finger protein ATL73-like [Raph...	[more]
VVB13310.1	7.110e-63	75.98	unnamed protein product [Arabis nemorensis]	[more]
CAE6086997.1	2.880e-62	80.57	unnamed protein product [Arabidopsis arenosa]	[more]
KAF2537734.1	1.380e-61	97.87	hypothetical protein F2Q68_00023300 [Brassica cret...	[more]
KAF3500088.1	7.950e-61	97.87	hypothetical protein F2Q69_00045538 [Brassica cret...	[more]

Pages

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009901	anther dehiscence
biological_process	GO:0009555	pollen development
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0080141	regulation of jasmonic acid biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM01197	FANCL_C_2	coord: 111..165 e-value: 0.0029 score: 2.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..31
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 3..166
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 3..166
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..62
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 63..180
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..40
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 114..157 e-value: 3.7622E-17 score: 69.2529
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 96..163
None	No IPR available	TMHMM	TMhelix		coord: 40..62
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 115..156 e-value: 1.7E-7 score: 40.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 114..157 e-value: 1.2E-14 score: 54.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 115..157 score: 12.326995
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 77..161 e-value: 5.6E-23 score: 82.4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:61415540..61416082 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59905H-R	BolC9t59905H-R	Brassica oleracea HDEM	mRNA	C9 61415540..61416082 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59905H-R-P ID=BolC9t59905H-R-P|Name=BolC9t59905H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=181bp
MGRFLLETQASSTISATDANPRTLGGSNSDDKNMSTLDTNMVIILAALLC
ALICALGLNSVLRCVLRCTRRSTPNEDPTHSNPHANVPKGIKKRDLKRIP
VYSYSSELKTKATECLICLGEFVEGEKVRVLPKCNHGFHVKCIDTWLRSH
SSCPTCRQPLILHQTLADGFLRDDDGTVAA.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

Vocabulary: **Biological Process**
Term	Definition
GO:0080141	regulation of jasmonic acid biosynthetic process
GO:0016567	protein ubiquitination
GO:0009901	anther dehiscence
GO:0009555	pollen development

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0004842	ubiquitin-protein transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolC9t59905H-R-P