BolC9t59898H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59898H-R
Unique NameBolC9t59898H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length72
Homology
BLAST of BolC9t59898H-R vs. GenBank_protein
Match: VDD34575.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 155 bits (391), Expect = 1.210e-47
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT
Sbjct:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71          
BLAST of BolC9t59898H-R vs. GenBank_protein
Match: KAF2572696.1 (hypothetical protein F2Q70_00006605 [Brassica cretica] >KAF3566598.1 hypothetical protein DY000_02019732 [Brassica cretica])

HSP 1 Score: 150 bits (379), Expect = 8.240e-46
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0
Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKLNEKRHIGYG IGSGTIPGCGPKNPNAAACKKTPANNY RGCSFGTRCRRHPPALDT
Sbjct:    1 MIISGFIEMGDARKLNEKRHIGYGGIGSGTIPGCGPKNPNAAACKKTPANNYSRGCSFGTRCRRHPPALDT 71          
BLAST of BolC9t59898H-R vs. GenBank_protein
Match: VDD20929.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 137 bits (346), Expect = 8.980e-41
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0
Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKL EKRHIGYG IGSGTIPGCGPKNPNA+ACKKTPAN Y RGCSFG+RCRR PPALDT
Sbjct:    1 MIISGFIEMGDARKLIEKRHIGYGGIGSGTIPGCGPKNPNASACKKTPANTYHRGCSFGSRCRRTPPALDT 71          
BLAST of BolC9t59898H-R vs. GenBank_protein
Match: RID42806.1 (hypothetical protein BRARA_J02666 [Brassica rapa])

HSP 1 Score: 137 bits (346), Expect = 1.610e-40
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0
Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKL EKRHIGYG IGSGTIPGCGPKNPNA+ACKKTPAN Y RGCSFG+RCRR PPALDT
Sbjct:   21 MIISGFIEMGDARKLIEKRHIGYGGIGSGTIPGCGPKNPNASACKKTPANTYHRGCSFGSRCRRTPPALDT 91          
BLAST of BolC9t59898H-R vs. GenBank_protein
Match: KAG2262635.1 (hypothetical protein Bca52824_069714 [Brassica carinata])

HSP 1 Score: 112 bits (279), Expect = 3.940e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0
Query:    9 MGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSF 58
            MGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSF
Sbjct:    1 MGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSF 50          
BLAST of BolC9t59898H-R vs. GenBank_protein
Match: XP_019094128.1 (PREDICTED: protein RALF-like 7 [Camelina sativa])

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-10
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCR 63
            +++S F E G+  K   ++H+GYG IG   IP CG KNP    C K PAN Y RGC   TRCR
Sbjct:   18 IVLSMFSECGEGMK---RKHLGYGAIGKDRIPACGFKNPKE--CIKIPANPYHRGCETSTRCR 75          
The following BLAST results are available for this feature:
BLAST of BolC9t59898H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 6
Match NameE-valueIdentityDescription
VDD34575.11.210e-47100.00unnamed protein product [Brassica oleracea][more]
KAF2572696.18.240e-4697.18hypothetical protein F2Q70_00006605 [Brassica cret... [more]
VDD20929.18.980e-4190.14unnamed protein product [Brassica rapa][more]
RID42806.11.610e-4090.14hypothetical protein BRARA_J02666 [Brassica rapa][more]
KAG2262635.13.940e-27100.00hypothetical protein Bca52824_069714 [Brassica car... [more]
XP_019094128.11.230e-1049.21PREDICTED: protein RALF-like 7 [Camelina sativa][more]
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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 13..64
e-value: 1.8E-10
score: 41.6
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 13..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:61392529..61392744 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59898H-RBolC9t59898H-RBrassica oleracea HDEMmRNAC9 61392529..61392744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59898H-R-P ID=BolC9t59898H-R-P|Name=BolC9t59898H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=72bp
MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPAN
NYKRGCSFGTRCRRHPPALDT.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005576extracellular region