BolC9t59898H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59898H-R
Unique Name	BolC9t59898H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	72

Homology

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BLAST of BolC9t59898H-R vs. GenBank_protein
Match: VDD34575.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 155 bits (391), Expect = 1.210e-47
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT
Sbjct:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71

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BLAST of BolC9t59898H-R vs. GenBank_protein
Match: KAF2572696.1 (hypothetical protein F2Q70_00006605 [Brassica cretica] >KAF3566598.1 hypothetical protein DY000_02019732 [Brassica cretica])

HSP 1 Score: 150 bits (379), Expect = 8.240e-46
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKLNEKRHIGYG IGSGTIPGCGPKNPNAAACKKTPANNY RGCSFGTRCRRHPPALDT
Sbjct:    1 MIISGFIEMGDARKLNEKRHIGYGGIGSGTIPGCGPKNPNAAACKKTPANNYSRGCSFGTRCRRHPPALDT 71

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BLAST of BolC9t59898H-R vs. GenBank_protein
Match: VDD20929.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 137 bits (346), Expect = 8.980e-41
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0

Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKL EKRHIGYG IGSGTIPGCGPKNPNA+ACKKTPAN Y RGCSFG+RCRR PPALDT
Sbjct:    1 MIISGFIEMGDARKLIEKRHIGYGGIGSGTIPGCGPKNPNASACKKTPANTYHRGCSFGSRCRRTPPALDT 71

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BLAST of BolC9t59898H-R vs. GenBank_protein
Match: RID42806.1 (hypothetical protein BRARA_J02666 [Brassica rapa])

HSP 1 Score: 137 bits (346), Expect = 1.610e-40
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0

Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCRRHPPALDT 71
            MIISGFIEMGDARKL EKRHIGYG IGSGTIPGCGPKNPNA+ACKKTPAN Y RGCSFG+RCRR PPALDT
Sbjct:   21 MIISGFIEMGDARKLIEKRHIGYGGIGSGTIPGCGPKNPNASACKKTPANTYHRGCSFGSRCRRTPPALDT 91

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BLAST of BolC9t59898H-R vs. GenBank_protein
Match: KAG2262635.1 (hypothetical protein Bca52824_069714 [Brassica carinata])

HSP 1 Score: 112 bits (279), Expect = 3.940e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query:    9 MGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSF 58
            MGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSF
Sbjct:    1 MGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSF 50

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BLAST of BolC9t59898H-R vs. GenBank_protein
Match: XP_019094128.1 (PREDICTED: protein RALF-like 7 [Camelina sativa])

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-10
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0

Query:    1 MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPANNYKRGCSFGTRCR 63
            +++S F E G+  K   ++H+GYG IG   IP CG KNP    C K PAN Y RGC   TRCR
Sbjct:   18 IVLSMFSECGEGMK---RKHLGYGAIGKDRIPACGFKNPKE--CIKIPANPYHRGCETSTRCR 75

The following BLAST results are available for this feature:

BLAST of BolC9t59898H-R vs. GenBank_protein

BLAST of BolC9t59898H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 6


Match Name	E-value	Identity	Description
VDD34575.1	1.210e-47	100.00	unnamed protein product [Brassica oleracea]	[more]
KAF2572696.1	8.240e-46	97.18	hypothetical protein F2Q70_00006605 [Brassica cret...	[more]
VDD20929.1	8.980e-41	90.14	unnamed protein product [Brassica rapa]	[more]
RID42806.1	1.610e-40	90.14	hypothetical protein BRARA_J02666 [Brassica rapa]	[more]
KAG2262635.1	3.940e-27	100.00	hypothetical protein Bca52824_069714 [Brassica car...	[more]
XP_019094128.1	1.230e-10	49.21	PREDICTED: protein RALF-like 7 [Camelina sativa]	[more]

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 13..64 e-value: 1.8E-10 score: 41.6
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 13..66

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:61392529..61392744 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59898H-R	BolC9t59898H-R	Brassica oleracea HDEM	mRNA	C9 61392529..61392744 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59898H-R-P ID=BolC9t59898H-R-P|Name=BolC9t59898H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=72bp
MIISGFIEMGDARKLNEKRHIGYGVIGSGTIPGCGPKNPNAAACKKTPAN
NYKRGCSFGTRCRRHPPALDT.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005576	extracellular region

Orthology

View orthology data for BolC9t59898H-R-P