BolC9t59872H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59872H-R
Unique NameBolC9t59872H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length536
Homology
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: VDD34549.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 1037 bits (2682), Expect = 0.000e+0
Identity = 535/535 (100.00%), Postives = 535/535 (100.00%), Query Frame = 0
Query:    1 MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHASNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKNIDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKSRFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHASNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKNIDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKSRFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHASNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKNIDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKSRFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: XP_013611641.1 (PREDICTED: chaperone protein dnaJ 49 [Brassica oleracea var. oleracea] >XP_013692868.1 chaperone protein dnaJ 49-like [Brassica napus] >KAG2262741.1 hypothetical protein Bca52824_069820 [Brassica carinata])

HSP 1 Score: 645 bits (1663), Expect = 3.060e-229
Identity = 348/353 (98.58%), Postives = 348/353 (98.58%), Query Frame = 0
Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 353          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: CAF1790159.1 (unnamed protein product [Brassica napus] >CDY68519.1 BnaCnng59330D [Brassica napus])

HSP 1 Score: 637 bits (1642), Expect = 6.210e-226
Identity = 347/360 (96.39%), Postives = 348/360 (96.67%), Query Frame = 0
Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXX-------SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXXX       SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 360          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF3502504.1 (hypothetical protein F2Q69_00045501 [Brassica cretica])

HSP 1 Score: 602 bits (1552), Expect = 1.030e-212
Identity = 324/335 (96.72%), Postives = 326/335 (97.31%), Query Frame = 0
Query:  206 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MGAGDRSRALKFLEKARRLDPSLP+DDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXX    SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MGAGDRSRALKFLEKARRLDPSLPVDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXX----SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 331          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF3561507.1 (hypothetical protein DY000_02019711 [Brassica cretica])

HSP 1 Score: 599 bits (1545), Expect = 1.230e-211
Identity = 324/335 (96.72%), Postives = 326/335 (97.31%), Query Frame = 0
Query:  206 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXX   SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSN+DARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRS KFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXX---SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSGKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 332          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: XP_009122173.1 (chaperone protein dnaJ 49 [Brassica rapa] >XP_013715700.1 chaperone protein dnaJ 49-like [Brassica napus])

HSP 1 Score: 591 bits (1524), Expect = 2.680e-208
Identity = 330/352 (93.75%), Postives = 332/352 (94.32%), Query Frame = 0
Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA 534
            MDGNKDDALKCLKIGKDAMGAGDRSRA+KFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXX SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRR   R HHS    FYDDEFDADEIFRSFFGGGG    ATQFRSFNFGGGNRAATNQ SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRAVKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXX-SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRR---RQHHS----FYDDEFDADEIFRSFFGGGG---GATQFRSFNFGGGNRAATNQASDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA 341          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: CAF2359142.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 587 bits (1514), Expect = 9.220e-207
Identity = 329/353 (93.20%), Postives = 332/353 (94.05%), Query Frame = 0
Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQG-SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA 534
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMR+AYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRR   R HHS    FYDDEFDADEIFRSFFGGGG    ATQFRSFNFGGGNRAATNQ  SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYL+ILGQNCRYELQRQQWGY RETPHCDMMRRFDSAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRRAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRR---RQHHS----FYDDEFDADEIFRSFFGGGG----ATQFRSFNFGGGNRAATNQAASDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLSILGQNCRYELQRQQWGYARETPHCDMMRRFDSAAAA 342          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF2535065.1 (hypothetical protein F2Q68_00023274 [Brassica cretica])

HSP 1 Score: 582 bits (1501), Expect = 6.730e-205
Identity = 319/335 (95.22%), Postives = 321/335 (95.82%), Query Frame = 0
Query:  206 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSN+DARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFR        RAA NQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRXXXXXXXXRAAANQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 335          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF8115171.1 (hypothetical protein N665_0029s0017 [Sinapis alba])

HSP 1 Score: 581 bits (1498), Expect = 3.730e-204
Identity = 321/356 (90.17%), Postives = 332/356 (93.26%), Query Frame = 0
Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSP--SPGSTA---PKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAA 533
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDP+LPI+DLLSDLN  S   SPGSTA   PKPS+RQRGS XXXXXXXXX   SFTEEQRAIVREIKSKKDYYEILGL KT SVE+MRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSN+DARRK     SDEPSYQ RRSARR H +GFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAA NQGSDTTGFNPRVLLQLLPVVFILLLNF+PSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQV+RDYL++LGQNCRYELQRQQWGYVRETPHCDMMRRFDS+AA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPTLPINDLLSDLNKPSAEDSPGSTANESPKPSLRQRGSSXXXXXXXXXSV-SFTEEQRAIVREIKSKKDYYEILGLVKTCSVEEMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDARRKYDVSGSDEPSYQPRRSARRQH-NGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAA-NQGSDTTGFNPRVLLQLLPVVFILLLNFLPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVDRDYLSVLGQNCRYELQRQQWGYVRETPHCDMMRRFDSSAA 353          
BLAST of BolC9t59872H-R vs. GenBank_protein
Match: RID42781.1 (hypothetical protein BRARA_J02641 [Brassica rapa])

HSP 1 Score: 574 bits (1480), Expect = 1.210e-201
Identity = 322/348 (92.53%), Postives = 326/348 (93.68%), Query Frame = 0
Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQG-SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFD 529
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNN SPSPGSTAPKPS+RQRGSXXXXXXXXXXXX SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMR+AYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRR   R HHS    FYDDEFDADEIFRSFFGGGG    ATQFRSFNFGGGNRAATNQ  SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYL+ILGQNCRYELQRQQWGYVRETPHCDMMRRF+
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNHSPSPGSTAPKPSLRQRGSXXXXXXXXXXXX-SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRRAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRR---RQHHS----FYDDEFDADEIFRSFFGGGG---GATQFRSFNFGGGNRAATNQAASDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLSILGQNCRYELQRQQWGYVRETPHCDMMRRFE 337          
The following BLAST results are available for this feature:
BLAST of BolC9t59872H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34549.10.000e+0100.00unnamed protein product [Brassica oleracea][more]
XP_013611641.13.060e-22998.58PREDICTED: chaperone protein dnaJ 49 [Brassica ole... [more]
CAF1790159.16.210e-22696.39unnamed protein product [Brassica napus] >CDY68519... [more]
KAF3502504.11.030e-21296.72hypothetical protein F2Q69_00045501 [Brassica cret... [more]
KAF3561507.11.230e-21196.72hypothetical protein DY000_02019711 [Brassica cret... [more]
XP_009122173.12.680e-20893.75chaperone protein dnaJ 49 [Brassica rapa] >XP_0137... [more]
CAF2359142.19.220e-20793.20unnamed protein product [Brassica napus][more]
KAF2535065.16.730e-20595.22hypothetical protein F2Q68_00023274 [Brassica cret... [more]
KAF8115171.13.730e-20490.17hypothetical protein N665_0029s0017 [Sinapis alba][more]
RID42781.11.210e-20192.53hypothetical protein BRARA_J02641 [Brassica rapa][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001623DnaJ domainPRINTSPR00625JDOMAINcoord: 325..345
score: 32.0
coord: 291..309
score: 41.67
coord: 309..324
score: 55.02
IPR001623DnaJ domainSMARTSM00271dnaj_3coord: 288..345
e-value: 7.6E-24
score: 95.2
IPR001623DnaJ domainPFAMPF00226DnaJcoord: 289..350
e-value: 2.7E-20
score: 72.2
IPR001623DnaJ domainPROSITEPS50076DNAJ_2coord: 289..353
score: 17.92305
IPR001623DnaJ domainCDDcd06257DnaJcoord: 289..342
e-value: 1.24697E-19
score: 80.6673
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 19..140
e-value: 4.6E-20
score: 71.7
IPR015399Domain of unknown function DUF1977, DnaJ-likePFAMPF09320DUF1977coord: 440..512
e-value: 3.0E-11
score: 43.4
IPR036869Chaperone J-domain superfamilyGENE3D1.10.287.110DnaJ domaincoord: 285..397
e-value: 4.5E-28
score: 100.0
IPR036869Chaperone J-domain superfamilySUPERFAMILY46565Chaperone J-domaincoord: 284..391
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 16..150
e-value: 3.2E-10
score: 42.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 341..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 341..358
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..276
NoneNo IPR availablePANTHERPTHR43908:SF9SUBFAMILY NOT NAMEDcoord: 188..533
NoneNo IPR availablePANTHERPTHR43908AT29763P-RELATEDcoord: 188..533
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 424..440
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..423
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 441..535
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 18..138
e-value: 2.76002E-20
score: 84.6732
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 17..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:61292059..61293892 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59872H-RBolC9t59872H-RBrassica oleracea HDEMmRNAC9 61292059..61293892 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59872H-R-P ID=BolC9t59872H-R-P|Name=BolC9t59872H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=536bp
MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHA
SNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKN
IDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKS
RFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLK
IGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPK
PSVRQRGSSSSSSSSSSSSSASFTEEQRAIVREIKSKKDYYEILGLAKTS
SVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSD
EPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRS
FNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS
PSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTIL
GQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR044730RNase_H-like_dom_plant
IPR036397RNaseH_sf
IPR036869J_dom_sf
IPR015399DUF1977_DnaJ-like
IPR002156RNaseH_domain
IPR001623DnaJ_domain
Vocabulary: Biological Process
TermDefinition
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic
Vocabulary: Molecular Function
TermDefinition
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane