BolC9t59872H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59872H-R
Unique Name	BolC9t59872H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	536

Homology

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BLAST of BolC9t59872H-R vs. GenBank_protein
Match: VDD34549.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 1037 bits (2682), Expect = 0.000e+0
Identity = 535/535 (100.00%), Postives = 535/535 (100.00%), Query Frame = 0

Query:    1 MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHASNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKNIDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKSRFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHASNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKNIDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKSRFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHASNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKNIDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKSRFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535

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BLAST of BolC9t59872H-R vs. GenBank_protein
Match: XP_013611641.1 (PREDICTED: chaperone protein dnaJ 49 [Brassica oleracea var. oleracea] >XP_013692868.1 chaperone protein dnaJ 49-like [Brassica napus] >KAG2262741.1 hypothetical protein Bca52824_069820 [Brassica carinata])

HSP 1 Score: 645 bits (1663), Expect = 3.060e-229
Identity = 348/353 (98.58%), Postives = 348/353 (98.58%), Query Frame = 0

Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 353

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BLAST of BolC9t59872H-R vs. GenBank_protein
Match: CAF1790159.1 (unnamed protein product [Brassica napus] >CDY68519.1 BnaCnng59330D [Brassica napus])

HSP 1 Score: 637 bits (1642), Expect = 6.210e-226
Identity = 347/360 (96.39%), Postives = 348/360 (96.67%), Query Frame = 0

Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXX-------SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXXX       SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 360

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BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF3502504.1 (hypothetical protein F2Q69_00045501 [Brassica cretica])

HSP 1 Score: 602 bits (1552), Expect = 1.030e-212
Identity = 324/335 (96.72%), Postives = 326/335 (97.31%), Query Frame = 0

Query:  206 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MGAGDRSRALKFLEKARRLDPSLP+DDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXX    SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MGAGDRSRALKFLEKARRLDPSLPVDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXX----SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 331

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BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF3561507.1 (hypothetical protein DY000_02019711 [Brassica cretica])

HSP 1 Score: 599 bits (1545), Expect = 1.230e-211
Identity = 324/335 (96.72%), Postives = 326/335 (97.31%), Query Frame = 0

Query:  206 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXX   SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSN+DARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRS KFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXX---SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSGKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 332

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BLAST of BolC9t59872H-R vs. GenBank_protein
Match: XP_009122173.1 (chaperone protein dnaJ 49 [Brassica rapa] >XP_013715700.1 chaperone protein dnaJ 49-like [Brassica napus])

HSP 1 Score: 591 bits (1524), Expect = 2.680e-208
Identity = 330/352 (93.75%), Postives = 332/352 (94.32%), Query Frame = 0

Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA 534
            MDGNKDDALKCLKIGKDAMGAGDRSRA+KFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXX SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRR   R HHS    FYDDEFDADEIFRSFFGGGG    ATQFRSFNFGGGNRAATNQ SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRAVKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXX-SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRR---RQHHS----FYDDEFDADEIFRSFFGGGG---GATQFRSFNFGGGNRAATNQASDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA 341

[Close]

BLAST of BolC9t59872H-R vs. GenBank_protein
Match: CAF2359142.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 587 bits (1514), Expect = 9.220e-207
Identity = 329/353 (93.20%), Postives = 332/353 (94.05%), Query Frame = 0

Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQG-SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAA 534
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMR+AYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRR   R HHS    FYDDEFDADEIFRSFFGGGG    ATQFRSFNFGGGNRAATNQ  SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYL+ILGQNCRYELQRQQWGY RETPHCDMMRRFDSAAAA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRRAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRR---RQHHS----FYDDEFDADEIFRSFFGGGG----ATQFRSFNFGGGNRAATNQAASDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLSILGQNCRYELQRQQWGYARETPHCDMMRRFDSAAAA 342

[Close]

BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF2535065.1 (hypothetical protein F2Q68_00023274 [Brassica cretica])

HSP 1 Score: 582 bits (1501), Expect = 6.730e-205
Identity = 319/335 (95.22%), Postives = 321/335 (95.82%), Query Frame = 0

Query:  206 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 535
            MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPS+RQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSN+DARRK     SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFR        RAA NQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA
Sbjct:    1 MGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSLRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDARRKYDVSGSDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRXXXXXXXXRAAANQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA 335

[Close]

BLAST of BolC9t59872H-R vs. GenBank_protein
Match: KAF8115171.1 (hypothetical protein N665_0029s0017 [Sinapis alba])

HSP 1 Score: 581 bits (1498), Expect = 3.730e-204
Identity = 321/356 (90.17%), Postives = 332/356 (93.26%), Query Frame = 0

Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSP--SPGSTA---PKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFDSAAA 533
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDP+LPI+DLLSDLN  S   SPGSTA   PKPS+RQRGS XXXXXXXXX   SFTEEQRAIVREIKSKKDYYEILGL KT SVE+MRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSN+DARRK     SDEPSYQ RRSARR H +GFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAA NQGSDTTGFNPRVLLQLLPVVFILLLNF+PSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQV+RDYL++LGQNCRYELQRQQWGYVRETPHCDMMRRFDS+AA
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPTLPINDLLSDLNKPSAEDSPGSTANESPKPSLRQRGSSXXXXXXXXXSV-SFTEEQRAIVREIKSKKDYYEILGLVKTCSVEEMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDARRKYDVSGSDEPSYQPRRSARRQH-NGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAA-NQGSDTTGFNPRVLLQLLPVVFILLLNFLPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVDRDYLSVLGQNCRYELQRQQWGYVRETPHCDMMRRFDSSAA 353

[Close]

BLAST of BolC9t59872H-R vs. GenBank_protein
Match: RID42781.1 (hypothetical protein BRARA_J02641 [Brassica rapa])

HSP 1 Score: 574 bits (1480), Expect = 1.210e-201
Identity = 322/348 (92.53%), Postives = 326/348 (93.68%), Query Frame = 0

Query:  188 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPKPSVRQRGSXXXXXXXXXXXXXSFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK-----SDEPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRSFNFGGGNRAATNQG-SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSPSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTILGQNCRYELQRQQWGYVRETPHCDMMRRFD 529
            MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNN SPSPGSTAPKPS+RQRGSXXXXXXXXXXXX SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMR+AYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRK     SDEPSYQTRR   R HHS    FYDDEFDADEIFRSFFGGGG    ATQFRSFNFGGGNRAATNQ  SDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS SYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYL+ILGQNCRYELQRQQWGYVRETPHCDMMRRF+
Sbjct:    1 MDGNKDDALKCLKIGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNHSPSPGSTAPKPSLRQRGSXXXXXXXXXXXX-SFTEEQRAIVREIKSKKDYYEILGLAKTSSVEDMRRAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKYDVSGSDEPSYQTRR---RQHHS----FYDDEFDADEIFRSFFGGGG---GATQFRSFNFGGGNRAATNQAASDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLSASYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLSILGQNCRYELQRQQWGYVRETPHCDMMRRFE 337

The following BLAST results are available for this feature:

BLAST of BolC9t59872H-R vs. GenBank_protein

BLAST of BolC9t59872H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34549.1	0.000e+0	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_013611641.1	3.060e-229	98.58	PREDICTED: chaperone protein dnaJ 49 [Brassica ole...	[more]
CAF1790159.1	6.210e-226	96.39	unnamed protein product [Brassica napus] >CDY68519...	[more]
KAF3502504.1	1.030e-212	96.72	hypothetical protein F2Q69_00045501 [Brassica cret...	[more]
KAF3561507.1	1.230e-211	96.72	hypothetical protein DY000_02019711 [Brassica cret...	[more]
XP_009122173.1	2.680e-208	93.75	chaperone protein dnaJ 49 [Brassica rapa] >XP_0137...	[more]
CAF2359142.1	9.220e-207	93.20	unnamed protein product [Brassica napus]	[more]
KAF2535065.1	6.730e-205	95.22	hypothetical protein F2Q68_00023274 [Brassica cret...	[more]
KAF8115171.1	3.730e-204	90.17	hypothetical protein N665_0029s0017 [Sinapis alba]	[more]
RID42781.1	1.210e-201	92.53	hypothetical protein BRARA_J02641 [Brassica rapa]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 325..345 score: 32.0 coord: 291..309 score: 41.67 coord: 309..324 score: 55.02
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 288..345 e-value: 7.6E-24 score: 95.2
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 289..350 e-value: 2.7E-20 score: 72.2
IPR001623	DnaJ domain	PROSITE	PS50076	DNAJ_2	coord: 289..353 score: 17.92305
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 289..342 e-value: 1.24697E-19 score: 80.6673
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 19..140 e-value: 4.6E-20 score: 71.7
IPR015399	Domain of unknown function DUF1977, DnaJ-like	PFAM	PF09320	DUF1977	coord: 440..512 e-value: 3.0E-11 score: 43.4
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 285..397 e-value: 4.5E-28 score: 100.0
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 284..391
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 16..150 e-value: 3.2E-10 score: 42.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..361
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..276
None	No IPR available	PANTHER	PTHR43908:SF9	SUBFAMILY NOT NAMED	coord: 188..533
None	No IPR available	PANTHER	PTHR43908	AT29763P-RELATED	coord: 188..533
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 424..440
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..423
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 441..535
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 18..138 e-value: 2.76002E-20 score: 84.6732
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 17..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:61292059..61293892 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59872H-R	BolC9t59872H-R	Brassica oleracea HDEM	mRNA	C9 61292059..61293892 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59872H-R-P ID=BolC9t59872H-R-P|Name=BolC9t59872H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=536bp
MEHQRNKWTKSPTGFVKCNYDEAYNNTETEARTDWIIRDDLGIFKGAAHA
SNQQPKTVLERKLQTLVLAMMNCWSKGYRHVIFEGDNINAMKLANGKIKN
IDVMNCIRDIWKYAAKFKEIKFCWANRNSNLCADILAKQASELCGRGSKS
RFLTISDELRSLRETLIPQASRLPPITSSGSCFSPLNMDGNKDDALKCLK
IGKDAMGAGDRSRALKFLEKARRLDPSLPIDDLLSDLNNQSPSPGSTAPK
PSVRQRGSSSSSSSSSSSSSASFTEEQRAIVREIKSKKDYYEILGLAKTS
SVEDMRKAYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNDDARRKSD
EPSYQTRRSARRTHHSGFNGFYDDEFDADEIFRSFFGGGGMAPAATQFRS
FNFGGGNRAATNQGSDTTGFNPRVLLQLLPVVFILLLNFMPSPQPIYSLS
PSYQYEHKFTTHRGVNYFVRSAKFEQEYPINSLERQRVEAQVERDYLTIL
GQNCRYELQRQQWGYVRETPHCDMMRRFDSAAAAA.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR044730	RNase_H-like_dom_plant
IPR036397	RNaseH_sf
IPR036869	J_dom_sf
IPR015399	DUF1977_DnaJ-like
IPR002156	RNaseH_domain
IPR001623	DnaJ_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic

Vocabulary: **Molecular Function**
Term	Definition
GO:0004523	RNA-DNA hybrid ribonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Orthology

View orthology data for BolC9t59872H-R-P