BolC9t59418H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59418H-R
Unique NameBolC9t59418H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length153
Homology
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: VDD34095.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 300 bits (769), Expect = 1.000e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN
Sbjct:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: CAF1787365.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 297 bits (761), Expect = 1.670e-101
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0
Query:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_013608480.1 (PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 278 bits (710), Expect = 1.030e-93
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:   14 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 153          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_013710761.1 (aspartyl protease family protein At5g10770-like [Brassica napus])

HSP 1 Score: 272 bits (695), Expect = 9.860e-87
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            QKLEIPP+VFSTPGALIDSGTVVSRLPPKAYAALRSAF AEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSG VVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:  359 QKLEIPPTVFSTPGALIDSGTVVSRLPPKAYAALRSAFKAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGSVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 498          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: VDD20136.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 251 bits (642), Expect = 2.030e-83
Identity = 125/138 (90.58%), Postives = 131/138 (94.93%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVV+DG GGRVGFAPNG
Sbjct:    9 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNLQQQTLEVVFDGAGGRVGFAPNG 146          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_033138824.1 (aspartyl protease family protein At5g10770-like, partial [Brassica rapa])

HSP 1 Score: 253 bits (647), Expect = 4.700e-82
Identity = 126/138 (91.30%), Postives = 131/138 (94.93%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  157 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 294          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: BAF01928.1 (nucleoid DNA-binding protein cnd41 - like protein, partial [Arabidopsis thaliana])

HSP 1 Score: 203 bits (516), Expect = 9.940e-64
Identity = 100/138 (72.46%), Postives = 115/138 (83.33%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS+F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   GI Y    S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:   44 QKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 181          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_010424699.1 (PREDICTED: aspartyl protease family protein At5g10770-like [Camelina sativa])

HSP 1 Score: 202 bits (515), Expect = 3.080e-62
Identity = 99/138 (71.74%), Postives = 115/138 (83.33%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   G+ Y+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  143 QKLAIPSTVFSTPGALIDSGTVITRLPPKAYAALRSEFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGLFYAFKMSQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 280          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: RID73211.1 (hypothetical protein BRARA_B00375 [Brassica rapa])

HSP 1 Score: 207 bits (528), Expect = 5.870e-62
Identity = 101/138 (73.19%), Postives = 118/138 (85.51%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL I P+VFSTPGALIDSGTV++RLPPKAYAAL+ AF A+MSQYP+A+G  ILDTCFD +G +TVT+P+V+F+FSGG VV+L PTG+LY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  338 QKLAIAPTVFSTPGALIDSGTVITRLPPKAYAALKDAFKAKMSQYPSASGVSILDTCFDLSGLKTVTIPKVAFSFSGGAVVELGPTGVLYAFKMSQVCLAFAGNSDDTNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 475          
BLAST of BolC9t59418H-R vs. GenBank_protein
Match: KAG2300830.1 (hypothetical protein Bca52824_037302 [Brassica carinata])

HSP 1 Score: 207 bits (527), Expect = 8.090e-62
Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL IPP+VFSTPGALIDSGTV+SRLPPKAYAALRSAF A+MSQY  A+   ILDTCFD TGF+TVT+P VSF FSGG VV+L   GILY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  337 QKLAIPPTVFSTPGALIDSGTVISRLPPKAYAALRSAFKAKMSQYKNASAVSILDTCFDLTGFKTVTIPTVSFYFSGGAVVELGSKGILYAFKMSQVCLAFAGNSDDNNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 474          
The following BLAST results are available for this feature:
BLAST of BolC9t59418H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34095.11.000e-102100.00unnamed protein product [Brassica oleracea][more]
CAF1787365.11.670e-10199.34unnamed protein product [Brassica napus][more]
XP_013608480.11.030e-9399.29PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL... [more]
XP_013710761.19.860e-8797.14aspartyl protease family protein At5g10770-like [B... [more]
VDD20136.12.030e-8390.58unnamed protein product [Brassica rapa][more]
XP_033138824.14.700e-8291.30aspartyl protease family protein At5g10770-like, p... [more]
BAF01928.19.940e-6472.46nucleoid DNA-binding protein cnd41 - like protein,... [more]
XP_010424699.13.080e-6271.74PREDICTED: aspartyl protease family protein At5g10... [more]
RID73211.15.870e-6273.19hypothetical protein BRARA_B00375 [Brassica rapa][more]
KAG2300830.18.090e-6276.09hypothetical protein Bca52824_037302 [Brassica car... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032799Xylanase inhibitor, C-terminalPFAMPF14541TAXi_Ccoord: 13..147
e-value: 4.4E-21
score: 75.3
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 8..151
e-value: 8.2E-35
score: 122.1
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 14..149
IPR001461Aspartic peptidase A1 familyPANTHERPTHR13683ASPARTYL PROTEASEScoord: 13..150
NoneNo IPR availablePANTHERPTHR13683:SF750ASPARTYL PROTEASE AED1coord: 13..150
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..152
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
IPR033121Peptidase family A1 domainPROSITEPS51767PEPTIDASE_A1coord: 1..147
score: 18.713392

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:58996667..58997783 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59418H-RBolC9t59418H-RBrassica oleracea HDEMmRNAC9 58996667..58997783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59418H-R-P ID=BolC9t59418H-R-P|Name=BolC9t59418H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=153bp
MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAF
VAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGI
LYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG
FN.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033121PEPTIDASE_A1
IPR001461Aspartic_peptidase_A1
IPR021109Peptidase_aspartic_dom_sf
IPR032799TAXi_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO:0003677DNA binding