BolC9t59418H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59418H-R
Unique Name	BolC9t59418H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	153

Homology

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: VDD34095.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 300 bits (769), Expect = 1.000e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN
Sbjct:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: CAF1787365.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 297 bits (761), Expect = 1.670e-101
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0

Query:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_013608480.1 (PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 278 bits (710), Expect = 1.030e-93
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:   14 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 153

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_013710761.1 (aspartyl protease family protein At5g10770-like [Brassica napus])

HSP 1 Score: 272 bits (695), Expect = 9.860e-87
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152
            QKLEIPP+VFSTPGALIDSGTVVSRLPPKAYAALRSAF AEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSG VVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:  359 QKLEIPPTVFSTPGALIDSGTVVSRLPPKAYAALRSAFKAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGSVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 498

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: VDD20136.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 251 bits (642), Expect = 2.030e-83
Identity = 125/138 (90.58%), Postives = 131/138 (94.93%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVV+DG GGRVGFAPNG
Sbjct:    9 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNLQQQTLEVVFDGAGGRVGFAPNG 146

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_033138824.1 (aspartyl protease family protein At5g10770-like, partial [Brassica rapa])

HSP 1 Score: 253 bits (647), Expect = 4.700e-82
Identity = 126/138 (91.30%), Postives = 131/138 (94.93%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  157 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 294

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: BAF01928.1 (nucleoid DNA-binding protein cnd41 - like protein, partial [Arabidopsis thaliana])

HSP 1 Score: 203 bits (516), Expect = 9.940e-64
Identity = 100/138 (72.46%), Postives = 115/138 (83.33%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS+F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   GI Y    S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:   44 QKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 181

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: XP_010424699.1 (PREDICTED: aspartyl protease family protein At5g10770-like [Camelina sativa])

HSP 1 Score: 202 bits (515), Expect = 3.080e-62
Identity = 99/138 (71.74%), Postives = 115/138 (83.33%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   G+ Y+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  143 QKLAIPSTVFSTPGALIDSGTVITRLPPKAYAALRSEFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGLFYAFKMSQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 280

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: RID73211.1 (hypothetical protein BRARA_B00375 [Brassica rapa])

HSP 1 Score: 207 bits (528), Expect = 5.870e-62
Identity = 101/138 (73.19%), Postives = 118/138 (85.51%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL I P+VFSTPGALIDSGTV++RLPPKAYAAL+ AF A+MSQYP+A+G  ILDTCFD +G +TVT+P+V+F+FSGG VV+L PTG+LY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  338 QKLAIAPTVFSTPGALIDSGTVITRLPPKAYAALKDAFKAKMSQYPSASGVSILDTCFDLSGLKTVTIPKVAFSFSGGAVVELGPTGVLYAFKMSQVCLAFAGNSDDTNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 475

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BLAST of BolC9t59418H-R vs. GenBank_protein
Match: KAG2300830.1 (hypothetical protein Bca52824_037302 [Brassica carinata])

HSP 1 Score: 207 bits (527), Expect = 8.090e-62
Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG 150
            QKL IPP+VFSTPGALIDSGTV+SRLPPKAYAALRSAF A+MSQY  A+   ILDTCFD TGF+TVT+P VSF FSGG VV+L   GILY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNG
Sbjct:  337 QKLAIPPTVFSTPGALIDSGTVISRLPPKAYAALRSAFKAKMSQYKNASAVSILDTCFDLTGFKTVTIPTVSFYFSGGAVVELGSKGILYAFKMSQVCLAFAGNSDDNNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 474

The following BLAST results are available for this feature:

BLAST of BolC9t59418H-R vs. GenBank_protein

BLAST of BolC9t59418H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34095.1	1.000e-102	100.00	unnamed protein product [Brassica oleracea]	[more]
CAF1787365.1	1.670e-101	99.34	unnamed protein product [Brassica napus]	[more]
XP_013608480.1	1.030e-93	99.29	PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL...	[more]
XP_013710761.1	9.860e-87	97.14	aspartyl protease family protein At5g10770-like [B...	[more]
VDD20136.1	2.030e-83	90.58	unnamed protein product [Brassica rapa]	[more]
XP_033138824.1	4.700e-82	91.30	aspartyl protease family protein At5g10770-like, p...	[more]
BAF01928.1	9.940e-64	72.46	nucleoid DNA-binding protein cnd41 - like protein,...	[more]
XP_010424699.1	3.080e-62	71.74	PREDICTED: aspartyl protease family protein At5g10...	[more]
RID73211.1	5.870e-62	73.19	hypothetical protein BRARA_B00375 [Brassica rapa]	[more]
KAG2300830.1	8.090e-62	76.09	hypothetical protein Bca52824_037302 [Brassica car...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032799	Xylanase inhibitor, C-terminal	PFAM	PF14541	TAXi_C	coord: 13..147 e-value: 4.4E-21 score: 75.3
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 8..151 e-value: 8.2E-35 score: 122.1
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 14..149
IPR001461	Aspartic peptidase A1 family	PANTHER	PTHR13683	ASPARTYL PROTEASES	coord: 13..150
None	No IPR available	PANTHER	PTHR13683:SF750	ASPARTYL PROTEASE AED1	coord: 13..150
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..152
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
IPR033121	Peptidase family A1 domain	PROSITE	PS51767	PEPTIDASE_A1	coord: 1..147 score: 18.713392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:58996667..58997783 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59418H-R	BolC9t59418H-R	Brassica oleracea HDEM	mRNA	C9 58996667..58997783 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59418H-R-P ID=BolC9t59418H-R-P|Name=BolC9t59418H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=153bp
MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAF
VAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGI
LYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG
FN.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033121	PEPTIDASE_A1
IPR001461	Aspartic_peptidase_A1
IPR021109	Peptidase_aspartic_dom_sf
IPR032799	TAXi_C

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004190	aspartic-type endopeptidase activity
GO:0003677	DNA binding

Orthology

View orthology data for BolC9t59418H-R-P