BolC9t58462H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58462H-R
Unique NameBolC9t58462H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length127
Homology
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: CDY35817.1 (BnaC09g37490D [Brassica napus] >VDD33139.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 247 bits (630), Expect = 2.270e-82
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MERTKSNTTQAIEQCKCETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126
            MERTKSNTTQAIEQCKCETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR
Sbjct:    1 MERTKSNTTQAIEQCKCETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: KAF3565941.1 (hypothetical protein DY000_02018366 [Brassica cretica])

HSP 1 Score: 206 bits (524), Expect = 7.520e-66
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0
Query:   18 ETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126
            ETGSDLTTRELDEKPISCRELP+EGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKP MPSFNGLRRRLPP LHSTGTVYTHLTATP KKTDR
Sbjct:   43 ETGSDLTTRELDEKPISCRELPKEGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPAMPSFNGLRRRLPPQLHSTGTVYTHLTATPIKKTDR 151          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: KAF2537758.1 (hypothetical protein F2Q68_00022314 [Brassica cretica])

HSP 1 Score: 184 bits (468), Expect = 1.210e-57
Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 0
Query:   29 DEKPISCRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126
            DEKPISCRELPREGRPQ LNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKP MPSFNGLRRRLPP LHSTGTVYTHLTATP KKTDR
Sbjct:   31 DEKPISCRELPREGRPQILNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPTMPSFNGLRRRLPPQLHSTGTVYTHLTATPIKKTDR 128          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: VDC68096.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 127 bits (320), Expect = 3.910e-35
Identity = 79/126 (62.70%), Postives = 89/126 (70.63%), Query Frame = 0
Query:    1 MERTKSNTTQAIEQCKCETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYSFQ-------QEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTAT 119
            MERTKSNTTQA++Q K + GSDLTTR+LDEKPISCRELPREGRPQTL   V T S +       + P A+P    +        EETTG TRRS+KP M SF+GL  RLPPPL ST TVYTHLTAT
Sbjct:    1 MERTKSNTTQAVKQYKSKMGSDLTTRKLDEKPISCRELPREGRPQTLIVIVPTASNRNPERIRAKNPNANPIASGK--------EETTGSTRRSQKPKMSSFSGLCWRLPPPLPSTRTVYTHLTAT 118          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: KAF2611231.1 (hypothetical protein F2Q70_00013931 [Brassica cretica])

HSP 1 Score: 79.0 bits (193), Expect = 6.480e-15
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0
Query:   55 SFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126
            +FQ   +A PSEES+HE K+   ++T GGTRRSR+P MPSF+ LRRRLPPPLH T TVY H T T  +KTDR
Sbjct:   13 NFQPVHKALPSEESKHELKEGEVKDTIGGTRRSREPTMPSFSDLRRRLPPPLHFTVTVYIHRTVTRIQKTDR 84          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: CAF2130730.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 69.3 bits (168), Expect = 3.460e-12
Identity = 54/121 (44.63%), Postives = 65/121 (53.72%), Query Frame = 0
Query:    6 SNTTQAIEQCKCETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126
            S+T QAI +    TGSD  TRELD                         +FQ   RA PSEES+HE K    ++TTGG R+SRK  MP FN L +RLP  LHST TVY ++T T  +K DR
Sbjct:    2 SSTMQAINKINNGTGSDQATRELD-------------------------NFQPIHRALPSEESKHEFKAKEVKKTTGGIRKSRKLRMPLFNDLHQRLPSLLHSTMTVYINVTVTRIEKKDR 97          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: CAF2026759.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 62.8 bits (151), Expect = 3.960e-10
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   35 CRELPREGRPQTLNATVHTYSFQQEPRAHPSEESEH-ESKDIMEEETTGGTRRSRKPMMPSFNGLRRRLPPPLHSTGTVY 113
            CR+LPREGRPQTLNATV T   +   R      + + +++D+  ++ T GTRRSRK  MP F+ L +RLP  LHST TVY
Sbjct:    1 CRQLPREGRPQTLNATVFTAFNRYIERLEAKNPNTNLKARDV--KKITSGTRRSRKLTMPLFSDLHQRLPSLLHSTVTVY 78          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: KAF3518727.1 (hypothetical protein DY000_02059713 [Brassica cretica])

HSP 1 Score: 63.9 bits (154), Expect = 6.050e-10
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 0
Query:   18 ETGSDLTTRELDEKPISCRELPREGRPQTLNATVHTYS 55
            ETGSDLTTRELDEKPISCRE PREGRPQ L A V T S
Sbjct:   13 ETGSDLTTRELDEKPISCREQPREGRPQNLIAAVPTAS 50          
BLAST of BolC9t58462H-R vs. GenBank_protein
Match: CAF1710284.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 58.5 bits (140), Expect = 6.610e-9
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0
Query:   92 MPSFNGLRRRLPPPLHSTGTVYTHLTATPTKKTDR 126
            MPSF+GLRRRLP PLHSTGTVY HL AT TKK DR
Sbjct:    1 MPSFSGLRRRLPSPLHSTGTVYIHLAATLTKKKDR 35          
The following BLAST results are available for this feature:
BLAST of BolC9t58462H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 9
Match NameE-valueIdentityDescription
CDY35817.12.270e-82100.00BnaC09g37490D [Brassica napus] >VDD33139.1 unnamed... [more]
KAF3565941.17.520e-6696.33hypothetical protein DY000_02018366 [Brassica cret... [more]
KAF2537758.11.210e-5795.92hypothetical protein F2Q68_00022314 [Brassica cret... [more]
VDC68096.13.910e-3562.70unnamed protein product [Brassica rapa][more]
KAF2611231.16.480e-1562.50hypothetical protein F2Q70_00013931 [Brassica cret... [more]
CAF2130730.13.460e-1244.63unnamed protein product [Brassica napus][more]
CAF2026759.13.960e-1051.25unnamed protein product, partial [Brassica napus][more]
KAF3518727.16.050e-1084.21hypothetical protein DY000_02059713 [Brassica cret... [more]
CAF1710284.16.610e-982.86unnamed protein product, partial [Brassica napus][more]
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InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:52607707..52608087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58462H-RBolC9t58462H-RBrassica oleracea HDEMmRNAC9 52607707..52608087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58462H-R-P ID=BolC9t58462H-R-P|Name=BolC9t58462H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=127bp
MERTKSNTTQAIEQCKCETGSDLTTRELDEKPISCRELPREGRPQTLNAT
VHTYSFQQEPRAHPSEESEHESKDIMEEETTGGTRRSRKPMMPSFNGLRR
RLPPPLHSTGTVYTHLTATPTKKTDR.
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