BolC9t58313H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58313H-R
Unique Name	BolC9t58313H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	208

Homology

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BLAST of BolC9t58313H-R vs. GenBank_protein
Match: XP_013609674.1 (PREDICTED: protein YLS9-like [Brassica oleracea var. oleracea] >KAF2535022.1 hypothetical protein F2Q68_00021413 [Brassica cretica] >KAF3562684.1 hypothetical protein DY000_02016642 [Brassica cretica] >VDD32990.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 419 bits (1076), Expect = 1.010e-147
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207

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BLAST of BolC9t58313H-R vs. GenBank_protein
Match: KAG2274471.1 (hypothetical protein Bca52824_057026 [Brassica carinata])

HSP 1 Score: 417 bits (1072), Expect = 4.100e-147
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIY SYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYTSYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207

[Close]

BLAST of BolC9t58313H-R vs. GenBank_protein
Match: XP_022565768.1 (NDR1/HIN1-like protein 12 [Brassica napus] >XP_022565769.1 NDR1/HIN1-like protein 12 [Brassica napus] >CAF1774489.1 unnamed protein product [Brassica napus])

HSP 1 Score: 416 bits (1070), Expect = 8.270e-147
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKV SWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVSSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207

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BLAST of BolC9t58313H-R vs. GenBank_protein
Match: KAF3500622.1 (hypothetical protein F2Q69_00043378 [Brassica cretica])

HSP 1 Score: 416 bits (1069), Expect = 1.180e-146
Identity = 205/207 (99.03%), Postives = 207/207 (100.00%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKECKF+YRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQ+VTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECKFDYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQKVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207

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BLAST of BolC9t58313H-R vs. GenBank_protein
Match: KAG5376465.1 (hypothetical protein IGI04_041061 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 416 bits (1068), Expect = 1.670e-146
Identity = 204/207 (98.55%), Postives = 207/207 (100.00%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKECKF+YRKYAEAATRR+VYGF+GLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECKFDYRKYAEAATRRLVYGFLGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207

[Close]

BLAST of BolC9t58313H-R vs. GenBank_protein
Match: CAF2337868.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 413 bits (1062), Expect = 1.370e-145
Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKECKF+YRKYAEAATRR+VYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIY SYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVG GPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECKFDYRKYAEAATRRLVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYVSYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGGGPAIKDQLAQQCAVDV 207

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BLAST of BolC9t58313H-R vs. GenBank_protein
Match: XP_009120680.1 (NDR1/HIN1-like protein 12 [Brassica rapa])

HSP 1 Score: 411 bits (1057), Expect = 7.940e-145
Identity = 202/207 (97.58%), Postives = 205/207 (99.03%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MT KECKF+YRKYAEAATRR+VYGF+GLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVG GPAIKDQLAQQCAVDV
Sbjct:    1 MTGKECKFDYRKYAEAATRRLVYGFLGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGGGPAIKDQLAQQCAVDV 207

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BLAST of BolC9t58313H-R vs. GenBank_protein
Match: XP_013665884.1 (NDR1/HIN1-like protein 12 [Brassica napus] >RID41530.1 hypothetical protein BRARA_J01486 [Brassica rapa])

HSP 1 Score: 408 bits (1048), Expect = 1.870e-143
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MT KECKF+YRKYAEAATRR+VYGF+GLVATVAVVIFFVWAILHPHKPRFVLQD+TIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVG GPAIKDQLAQ CAVDV
Sbjct:    1 MTGKECKFDYRKYAEAATRRLVYGFLGLVATVAVVIFFVWAILHPHKPRFVLQDLTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGGGPAIKDQLAQPCAVDV 207

[Close]

BLAST of BolC9t58313H-R vs. GenBank_protein
Match: VDD18535.1 (unnamed protein product, partial [Brassica rapa])

HSP 1 Score: 406 bits (1044), Expect = 7.630e-143
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            +T KECKF+YRKYAEAATRR+VYGF+GLVATVAVVIFFVWAILHPHKPRFVLQD+TIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVG GPAIKDQLAQ CAVDV
Sbjct:    1 ITGKECKFDYRKYAEAATRRLVYGFLGLVATVAVVIFFVWAILHPHKPRFVLQDLTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGGGPAIKDQLAQPCAVDV 207

[Close]

BLAST of BolC9t58313H-R vs. GenBank_protein
Match: KAF8113344.1 (hypothetical protein N665_0050s0004 [Sinapis alba])

HSP 1 Score: 404 bits (1038), Expect = 6.270e-142
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 0

Query:    1 MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLAQQCAVDV 207
            MTEKEC+F+YRKYAEAAT RVVYGF+GLVATVAVVIF VWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPV+PYL+PAL EDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQ+VGAGPAIKDQLAQQCAVDV
Sbjct:    1 MTEKECEFDYRKYAEAATGRVVYGFLGLVATVAVVIFMVWAILHPHKPRFVLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRNQEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVEPYLSPALNEDINAGMVLLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQLVGAGPAIKDQLAQQCAVDV 207

The following BLAST results are available for this feature:

BLAST of BolC9t58313H-R vs. GenBank_protein

BLAST of BolC9t58313H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013609674.1	1.010e-147	100.00	PREDICTED: protein YLS9-like [Brassica oleracea va...	[more]
KAG2274471.1	4.100e-147	99.52	hypothetical protein Bca52824_057026 [Brassica car...	[more]
XP_022565768.1	8.270e-147	99.52	NDR1/HIN1-like protein 12 [Brassica napus] >XP_022...	[more]
KAF3500622.1	1.180e-146	99.03	hypothetical protein F2Q69_00043378 [Brassica cret...	[more]
KAG5376465.1	1.670e-146	98.55	hypothetical protein IGI04_041061 [Brassica rapa s...	[more]
CAF2337868.1	1.370e-145	98.07	unnamed protein product [Brassica napus]	[more]
XP_009120680.1	7.940e-145	97.58	NDR1/HIN1-like protein 12 [Brassica rapa]	[more]
XP_013665884.1	1.870e-143	96.62	NDR1/HIN1-like protein 12 [Brassica napus] >RID415...	[more]
VDD18535.1	7.630e-143	96.14	unnamed protein product, partial [Brassica rapa]	[more]
KAF8113344.1	6.270e-142	95.65	hypothetical protein N665_0050s0004 [Sinapis alba]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 75..170 e-value: 2.8E-9 score: 37.5
None	No IPR available	PANTHER	PTHR31415:SF121	BNAANNG30660D PROTEIN	coord: 14..207
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..43
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 44..207
None	No IPR available	TMHMM	TMhelix		coord: 21..43
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 14..207

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:51476855..51477863 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58313H-R	BolC9t58313H-R	Brassica oleracea HDEM	mRNA	C9 51476855..51477863 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58313H-R-P ID=BolC9t58313H-R-P|Name=BolC9t58313H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=208bp
MTEKECKFEYRKYAEAATRRVVYGFIGLVATVAVVIFFVWAILHPHKPRF
VLQDVTIYEFNISQPNLLSSNLQVTLSSRNPNDKIGVFYDRLDIYASYRN
QEVTLANLLPETYQGHLEVTVWSPVLIGSAVPVDPYLTPALKEDINAGMV
LLNIKIDGCVKWKVGSWVSGCYRLLVNCPAFIPFSGQVVGAGPAIKDQLA
QQCAVDV.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR044839	NDR1-like
IPR004864	LEA_2

Vocabulary: **Biological Process**
Term	Definition
GO:0098542	defense response to other organism

Vocabulary: **Cellular Component**
Term	Definition
GO:0046658	anchored component of plasma membrane
GO:0016021	integral component of membrane
GO:0009506	plasmodesma

Orthology

View orthology data for BolC9t58313H-R-P