BolC9t58259H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58259H-R
Unique Name	BolC9t58259H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	424

Homology

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: VDD32936.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 744 bits (1920), Expect = 4.100e-269
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ
Sbjct:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: XP_013608990.1 (PREDICTED: protein RETICULATA-RELATED 1 [Brassica oleracea var. oleracea] >XP_013723980.1 protein RETICULATA-RELATED 1, chloroplastic-like [Brassica napus])

HSP 1 Score: 740 bits (1910), Expect = 1.370e-267
Identity = 420/423 (99.29%), Postives = 422/423 (99.76%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 423

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: CAF1773563.1 (unnamed protein product [Brassica napus] >CDY26956.1 BnaC09g36270D [Brassica napus])

HSP 1 Score: 736 bits (1899), Expect = 6.020e-266
Identity = 418/423 (98.82%), Postives = 420/423 (99.29%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 421

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: KAG2274511.1 (hypothetical protein Bca52824_057066 [Brassica carinata])

HSP 1 Score: 727 bits (1877), Expect = 1.210e-262
Identity = 414/423 (97.87%), Postives = 416/423 (98.35%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLSGDVFNTVEPRIQ RAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSGDVFNTVEPRIQGRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 418

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: XP_013667170.1 (protein RETICULATA-RELATED 1, chloroplastic-like [Brassica napus])

HSP 1 Score: 724 bits (1868), Expect = 3.060e-261
Identity = 410/424 (96.70%), Postives = 415/424 (97.88%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNT-VEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLS DVFNT VEPRIQCRAGQASVCFRRSP FVS+RIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTS+PSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQR+ATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSSDVFNTTVEPRIQCRAGQASVCFRRSPAFVSARIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE----AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSLPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRVATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 420

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: VDD18455.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 721 bits (1861), Expect = 3.190e-260
Identity = 403/424 (95.05%), Postives = 408/424 (96.23%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNT-VEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLS DVFNT VEPRIQCRAGQASVCFRRSP FVS+RIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGG G   XXXXXXXXXXXXXXXXXXXXXXXX        AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTS+PSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQR+ATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSSDVFNTTVEPRIQCRAGQASVCFRRSPAFVSARIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGGGGDEXXXXXXXXXXXXXXXXXXXXXXXXE-------AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSLPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRVATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 417

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: XP_009120647.1 (protein RETICULATA-RELATED 1, chloroplastic [Brassica rapa])

HSP 1 Score: 717 bits (1851), Expect = 1.190e-258
Identity = 408/424 (96.23%), Postives = 415/424 (97.88%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNT-VEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLS DVFNT VEPRIQCRAGQASVCFRRSPGFVS+RIHWSSELSSRS RARCVGSDVVTREISGRSKDETF ++EPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTS+PSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQR+ATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSSDVFNTTVEPRIQCRAGQASVCFRRSPGFVSARIHWSSELSSRSFRARCVGSDVVTREISGRSKDETFSELEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----EEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSLPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRVATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 420

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: KAG5376434.1 (hypothetical protein IGI04_041030 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 717 bits (1851), Expect = 1.330e-258
Identity = 408/424 (96.23%), Postives = 415/424 (97.88%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNT-VEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLKISHISNLS DVFNT VEPRIQCRAGQASVCFRRSPGFVS+RIHWSSELSSRS RARCVGSDVVTREISGRSKDETF ++EPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTS+PSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQR+ATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKISHISNLSSDVFNTTVEPRIQCRAGQASVCFRRSPGFVSARIHWSSELSSRSFRARCVGSDVVTREISGRSKDETFSELEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----EEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSLPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRVATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 420

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: RID41494.1 (hypothetical protein BRARA_J01452 [Brassica rapa] >CAF2337232.1 unnamed protein product [Brassica napus])

HSP 1 Score: 714 bits (1844), Expect = 1.550e-257
Identity = 408/424 (96.23%), Postives = 415/424 (97.88%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNT-VEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSLTLK+SHISNLS DVFNT VEPRIQCRAGQASVCFRRS GFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDE F ++EP LDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTS+PSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQR+ATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLTLKVSHISNLSSDVFNTTVEPRIQCRAGQASVCFRRSAGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDEAFSELEPVLDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-AEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSLPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRVATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 423

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BLAST of BolC9t58259H-R vs. GenBank_protein
Match: KAG2299935.1 (hypothetical protein Bca52824_036407 [Brassica carinata])

HSP 1 Score: 704 bits (1818), Expect = 1.220e-253
Identity = 406/423 (95.98%), Postives = 412/423 (97.40%), Query Frame = 0

Query:    1 MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWSSELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEKEFGPILKFDEVMKETERRGIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKSSGVQ 423
            MSL+LKISHISNLS DVFNTVEPRIQCRAGQASVCFRRSPGFVS+RIHWSSELSSRS RARC GSDVVT EI+GRSKDETFR  EPELDGGD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EKEFGPILKFDEVMKETERRG+ALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTE++IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSV SSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAK SGVQ
Sbjct:    1 MSLSLKISHISNLSSDVFNTVEPRIQCRAGQASVCFRRSPGFVSTRIHWSSELSSRSLRARCAGSDVVTAEIAGRSKDETFR--EPELDGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EKEFGPILKFDEVMKETERRGVALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKTSVASSTGLFSGLKRSCAALPSSVFEAERPGCKFSVNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 419

The following BLAST results are available for this feature:

BLAST of BolC9t58259H-R vs. GenBank_protein

BLAST of BolC9t58259H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD32936.1	4.100e-269	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_013608990.1	1.370e-267	99.29	PREDICTED: protein RETICULATA-RELATED 1 [Brassica ...	[more]
CAF1773563.1	6.020e-266	98.82	unnamed protein product [Brassica napus] >CDY26956...	[more]
KAG2274511.1	1.210e-262	97.87	hypothetical protein Bca52824_057066 [Brassica car...	[more]
XP_013667170.1	3.060e-261	96.70	protein RETICULATA-RELATED 1, chloroplastic-like [...	[more]
VDD18455.1	3.190e-260	95.05	unnamed protein product [Brassica rapa]	[more]
XP_009120647.1	1.190e-258	96.23	protein RETICULATA-RELATED 1, chloroplastic [Brass...	[more]
KAG5376434.1	1.330e-258	96.23	hypothetical protein IGI04_041030 [Brassica rapa s...	[more]
RID41494.1	1.550e-257	96.23	hypothetical protein BRARA_J01452 [Brassica rapa] ...	[more]
KAG2299935.1	1.220e-253	95.98	hypothetical protein Bca52824_036407 [Brassica car...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 197..377 e-value: 7.9E-65 score: 217.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..137
None	No IPR available	PANTHER	PTHR31038	EXPRESSED PROTEIN-RELATED	coord: 2..423
None	No IPR available	PANTHER	PTHR31038:SF18	PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC	coord: 2..423
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 313..333
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 262..312
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 238..261
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 334..423
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..237
None	No IPR available	TMHMM	TMhelix		coord: 312..334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:50943543..50945384 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58259H-R	BolC9t58259H-R	Brassica oleracea HDEM	mRNA	C9 50943543..50945384 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58259H-R-P ID=BolC9t58259H-R-P|Name=BolC9t58259H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=424bp
MSLTLKISHISNLSGDVFNTVEPRIQCRAGQASVCFRRSPGFVSSRIHWS
SELSSRSSRARCVGSDVVTREISGRSKDETFRDIEPELDGGDGGGGDDGG
INGGNGGGGDGGGGGGGGEGGNDGGEDEAEEKEFGPILKFDEVMKETERR
GIALPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRTCTMLRNRML
ADPSFLFKVGTEVSIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVD
VALVGLLAPYARIGKTSVPSSTGLFSGLKRSCAALPSSVFEAERPGCKFS
VNQRIATFFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDVPVP
PLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVG
VRFANNVYGGMQFVDWAKSSGVQ.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021825	RETICULATA-related

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0009706	chloroplast inner membrane
GO:0005739	mitochondrion

Orthology

View orthology data for BolC9t58259H-R-P