BolC9t58228H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t58228H-R
Unique NameBolC9t58228H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length48
Homology
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: CAF1773061.1 (unnamed protein product [Brassica napus] >CDY26982.1 BnaC09g36010D [Brassica napus] >VDD32905.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 115 bits (287), Expect = 1.770e-32
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
            MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF
Sbjct:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: KAG2249364.1 (hypothetical protein Bca52824_088992 [Brassica carinata])

HSP 1 Score: 104 bits (260), Expect = 1.120e-26
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
            +C ICQDKFIGNGDVNSLRCN+IYHHLCIV WIRHNLSCPTCRDTHF
Sbjct:  143 VCSICQDKFIGNGDVNSLRCNNIYHHLCIVEWIRHNLSCPTCRDTHF 189
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: VDD03278.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 93.2 bits (230), Expect = 3.700e-22
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDT 45
            +C ICQDKF+G G VNSLRCNH YHHLCIV WIRHNLSCPTCRDT
Sbjct:  143 VCTICQDKFVGTGVVNSLRCNHKYHHLCIVEWIRHNLSCPTCRDT 187
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: KAF2554792.1 (hypothetical protein F2Q68_00015171 [Brassica cretica])

HSP 1 Score: 92.4 bits (228), Expect = 7.400e-22
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
            +C ICQDK IG G VNSL+CNHIYHHLCIV WIRHNL  PTCRDTHF
Sbjct:  143 VCSICQDKLIGTGVVNSLKCNHIYHHLCIVEWIRHNLRSPTCRDTHF 189
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: KAG2270615.1 (hypothetical protein Bca52824_065170 [Brassica carinata])

HSP 1 Score: 92.4 bits (228), Expect = 7.400e-22
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
            +C ICQDK IG G VNSL+CNHIYHHLCIV WIRHNL  PTCRDTHF
Sbjct:  143 VCSICQDKLIGTGVVNSLKCNHIYHHLCIVEWIRHNLRSPTCRDTHF 189
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: VDD61864.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-21
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:    4 ICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
            ICQDK+IG G VNSLRCNHIYHHLCIV WIRHNLS PTCR THF
Sbjct:  121 ICQDKYIGTGVVNSLRCNHIYHHLCIVEWIRHNLSRPTCRGTHF 164
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: KAF3517227.1 (hypothetical protein DY000_02061266 [Brassica cretica])

HSP 1 Score: 90.5 bits (223), Expect = 4.170e-21
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:    4 ICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF 47
            ICQDK+IG G VNSLRCNHIYHHLCIV WIRHNLS PTCR THF
Sbjct:  146 ICQDKYIGTGVVNSLRCNHIYHHLCIVEWIRHNLSRPTCRGTHF 189
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: KAG2307221.1 (hypothetical protein Bca52824_026969 [Brassica carinata])

HSP 1 Score: 87.0 bits (214), Expect = 9.930e-21
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDT 45
            +C I QDKFIG G VNSLRCN+ YHHLCIV WIRHNLSCPTCRDT
Sbjct:   47 VCTIFQDKFIGTGVVNSLRCNYRYHHLCIVEWIRHNLSCPTCRDT 91
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: CDY34523.1 (BnaA08g04780D [Brassica napus])

HSP 1 Score: 93.2 bits (230), Expect = 1.030e-20
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDT 45
            +C ICQDKF+G G VNSLRCNH YHHLCIV WIRHNLSCPTCRDT
Sbjct:  370 VCTICQDKFVGTGVVNSLRCNHKYHHLCIVEWIRHNLSCPTCRDT 414
[Close]
BLAST of BolC9t58228H-R vs. GenBank_protein
Match: CAF2223434.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 93.2 bits (230), Expect = 1.520e-20
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:    1 MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDT 45
            +C ICQDKF+G G VNSLRCNH YHHLCIV WIRHNLSCPTCRDT
Sbjct:  472 VCTICQDKFVGTGVVNSLRCNHKYHHLCIVEWIRHNLSCPTCRDT 516
The following BLAST results are available for this feature:
BLAST of BolC9t58228H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CAF1773061.11.770e-32100.00unnamed protein product [Brassica napus] >CDY26982... [more]
KAG2249364.11.120e-2691.49hypothetical protein Bca52824_088992 [Brassica car... [more]
VDD03278.13.700e-2284.44unnamed protein product [Brassica rapa][more]
KAF2554792.17.400e-2280.85hypothetical protein F2Q68_00015171 [Brassica cret... [more]
KAG2270615.17.400e-2280.85hypothetical protein Bca52824_065170 [Brassica car... [more]
VDD61864.12.300e-2186.36unnamed protein product [Brassica oleracea][more]
KAF3517227.14.170e-2186.36hypothetical protein DY000_02061266 [Brassica cret... [more]
KAG2307221.19.930e-2182.22hypothetical protein Bca52824_026969 [Brassica car... [more]
CDY34523.11.030e-2084.44BnaA08g04780D [Brassica napus][more]
CAF2223434.11.520e-2084.44unnamed protein product [Brassica napus][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
molecular_function GO:0061630 ubiquitin protein ligase activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 2..42
e-value: 9.0E-5
score: 31.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 1..43
e-value: 1.6E-10
score: 41.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 2..43
score: 11.589345
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..45
e-value: 2.9E-13
score: 51.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:50721132..50721275 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t58228H-RBolC9t58228H-RBrassica oleracea HDEMmRNAC9 50721132..50721275 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t58228H-R-P ID=BolC9t58228H-R-P|Name=BolC9t58228H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=48bp
MCFICQDKFIGNGDVNSLRCNHIYHHLCIVGWIRHNLSCPTCRDTHF.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0061630ubiquitin protein ligase activity