BolC9t58071H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t58071H-R
Unique Name	BolC9t58071H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	206

Homology

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: VDD32748.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 424 bits (1089), Expect = 8.980e-150
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS
Sbjct:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_033148544.1 (uncharacterized protein LOC117134364 [Brassica rapa])

HSP 1 Score: 387 bits (994), Expect = 6.690e-134
Identity = 187/204 (91.67%), Postives = 192/204 (94.12%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVR 204
            MLV AAQDGNFQIFP AFGIVDAEDEPSWEWFFTKLASCVS+EQPLVIVSDRH AIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAH VS+FDRYMAE +SANPDLATYLENADVSLWSR YCQGD+YNIKTSNIAESINSALKRARGF VQFLLEF  EKLGKWFWKRRED LSLPTQHS G+EYLL VR
Sbjct:   92 MLVAAAQDGNFQIFPLAFGIVDAEDEPSWEWFFTKLASCVSNEQPLVIVSDRHAAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHTVSNFDRYMAEIQSANPDLATYLENADVSLWSRVYCQGDKYNIKTSNIAESINSALKRARGFPVQFLLEFKIEKLGKWFWKRREDALSLPTQHSRGVEYLLAVR 295

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018454206.1 (PREDICTED: uncharacterized protein LOC108825412 [Raphanus sativus])

HSP 1 Score: 366 bits (940), Expect = 9.270e-125
Identity = 171/205 (83.41%), Postives = 188/205 (91.71%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIFP AFGIVDAEDEPSWEWFFTKLASC+S ++PLVIVSDRH AIKSAC+KVFPWATRGICYYHLQDNIVKK+KGKHL+YLVKGAAY H V DFDRYMAE RSANP+LATYLE AD  LWSR YC+G+++NIKTSNIAESINSALKRARGF + FLLEFIR+KLGKW+WKRR+D LSLPT+HS G+EYLL VRS
Sbjct:    1 MLVAAAQDGNFQIFPLAFGIVDAEDEPSWEWFFTKLASCISHDKPLVIVSDRHAAIKSACEKVFPWATRGICYYHLQDNIVKKFKGKHLMYLVKGAAYEHTVYDFDRYMAEIRSANPELATYLEKADARLWSRVYCKGNKFNIKTSNIAESINSALKRARGFPIPFLLEFIRQKLGKWYWKRRQDALSLPTEHSRGVEYLLAVRS 205

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018479508.1 (PREDICTED: uncharacterized protein LOC108850478 [Raphanus sativus])

HSP 1 Score: 366 bits (940), Expect = 1.430e-123
Identity = 172/205 (83.90%), Postives = 188/205 (91.71%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIFP AFGIVDAEDEPSWEWFFTKLASC+S ++PLVIVSDRH AIKSAC+KVFPWATRGICYYHLQDNIVKK+KGKHL+YLVKGAAYAH V DF+RYMAE RSANP+LATYLE AD  LWSR YC+G+R+NIKTSNIAESINSALKRARGF + FLLEFIR+KLGKW+WKRR+D LSLPT HS G+EYLL VRS
Sbjct:   98 MLVAAAQDGNFQIFPLAFGIVDAEDEPSWEWFFTKLASCISHDKPLVIVSDRHAAIKSACEKVFPWATRGICYYHLQDNIVKKFKGKHLMYLVKGAAYAHTVHDFNRYMAEIRSANPELATYLEKADTRLWSRVYCKGNRFNIKTSNIAESINSALKRARGFPIPFLLEFIRQKLGKWYWKRRQDALSLPTVHSRGVEYLLAVRS 302

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018487682.1 (PREDICTED: uncharacterized protein LOC108858224 [Raphanus sativus])

HSP 1 Score: 372 bits (956), Expect = 2.230e-123
Identity = 178/205 (86.83%), Postives = 188/205 (91.71%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIFP AFGIVDAED PSWEWFFTKLASC+S + PLVIVSDRH AIKSACDKVFPWATRGICYYHLQ+NIVK YKG+HLLYLVKGAAYAH VSDFDRYMAE RSANPDLATYL NADVSLWSR YC GDR+NIKTSNIAESINSALKRARGF + FLLEFIREKLG+WFWKRR+D LSLPTQ+S G+EYLL VRS
Sbjct:  280 MLVAAAQDGNFQIFPLAFGIVDAEDGPSWEWFFTKLASCISHDSPLVIVSDRHEAIKSACDKVFPWATRGICYYHLQENIVKTYKGRHLLYLVKGAAYAHTVSDFDRYMAEIRSANPDLATYLVNADVSLWSRVYCTGDRHNIKTSNIAESINSALKRARGFPIDFLLEFIREKLGRWFWKRRDDALSLPTQNSRGVEYLLAVRS 484

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018435940.1 (PREDICTED: uncharacterized protein LOC108808265 [Raphanus sativus])

HSP 1 Score: 373 bits (957), Expect = 2.400e-123
Identity = 179/205 (87.32%), Postives = 187/205 (91.22%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIFP AFGIVDAED PSWEWFFTKLASC+S + PLVIVSDRH AIKSACDKVFPWATRGICYYHLQ+NIVK YKG+HLLYLVKGAAYAH VSDFDRYMAE RSANPDLATYL NADVSLWSR YC GDRYNIKTSNIAESINSALKRARGF + FLLEFIREKLG WFWKRR+D LSLPTQ+S G+EYLL VRS
Sbjct:  306 MLVAAAQDGNFQIFPLAFGIVDAEDGPSWEWFFTKLASCISHDSPLVIVSDRHEAIKSACDKVFPWATRGICYYHLQENIVKTYKGRHLLYLVKGAAYAHTVSDFDRYMAEIRSANPDLATYLVNADVSLWSRVYCTGDRYNIKTSNIAESINSALKRARGFSIVFLLEFIREKLGMWFWKRRDDALSLPTQNSRGVEYLLAVRS 510

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018461526.1 (PREDICTED: uncharacterized protein LOC108832549 [Raphanus sativus])

HSP 1 Score: 368 bits (945), Expect = 4.790e-121
Identity = 176/205 (85.85%), Postives = 185/205 (90.24%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIFP AFGIVDAED PSWEWFFTKLASC+S + PLVIVSDRH AIKSACDKVFPWATRGICYYHLQ+NIVK YK +HLLYLVKG AYAH VSDFDRYMAE RSANPDLATYL NADVSLWSR YC GDRYNIKTSNIAESINSALKRARGF + FLLEFIREKLGKWFWK+R+D LSLPTQ+  G+EYLL VRS
Sbjct:  382 MLVAAAQDGNFQIFPLAFGIVDAEDGPSWEWFFTKLASCISHDSPLVIVSDRHDAIKSACDKVFPWATRGICYYHLQENIVKTYKRRHLLYLVKGVAYAHTVSDFDRYMAEIRSANPDLATYLVNADVSLWSRVYCTGDRYNIKTSNIAESINSALKRARGFPIDFLLEFIREKLGKWFWKKRDDALSLPTQNKRGVEYLLAVRS 586

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BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018459836.1 (PREDICTED: uncharacterized protein LOC108830748 [Raphanus sativus])

HSP 1 Score: 367 bits (941), Expect = 9.220e-121
Identity = 172/205 (83.90%), Postives = 188/205 (91.71%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIFP AFGIVDAEDEPSWEWFFTKLASC+S ++PLVIVSDRH AIKSAC+KVFPWATRGICYYHLQDNIVKK+KGKHL+YLVKGAAYAH V DF+RYMAE RSANP+LATYLE AD  LWSR YC+G+R+NIKTSNIAESINSALKRARGF + FLLEFIR+KLGKW+WKRR+D LSLPT HS G+EYLL VRS
Sbjct:  313 MLVAAAQDGNFQIFPLAFGIVDAEDEPSWEWFFTKLASCISHDKPLVIVSDRHAAIKSACEKVFPWATRGICYYHLQDNIVKKFKGKHLMYLVKGAAYAHTVHDFNRYMAEIRSANPELATYLEKADAKLWSRVYCKGNRFNIKTSNIAESINSALKRARGFPIPFLLEFIRQKLGKWYWKRRQDALSLPTVHSRGVEYLLAVRS 517

[Close]

BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_013623939.1 (PREDICTED: uncharacterized protein LOC106329876 [Brassica oleracea var. oleracea])

HSP 1 Score: 362 bits (930), Expect = 4.420e-120
Identity = 171/204 (83.82%), Postives = 186/204 (91.18%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVR 204
            MLV AAQDGNFQIFP AFGIVD ED PSWEWFFTKLASC+S ++PLVIVSDRH AIKSACDKVFPWATRGICYYHLQDNIVKK+KGKHL+YLVKGAAYAH V DFDRYMAE RSANP+LATYLE ADV LWSR YC+G+R+NIKTSNIAESINSALKRARGF + FLLEFIR+KLGKW+WKRR+D LSL T+HS G+EYLL VR
Sbjct:  336 MLVAAAQDGNFQIFPLAFGIVDEEDIPSWEWFFTKLASCISHDKPLVIVSDRHKAIKSACDKVFPWATRGICYYHLQDNIVKKFKGKHLMYLVKGAAYAHTVYDFDRYMAEIRSANPELATYLEKADVRLWSRVYCKGNRFNIKTSNIAESINSALKRARGFPITFLLEFIRQKLGKWYWKRRQDALSLTTEHSQGVEYLLAVR 539

[Close]

BLAST of BolC9t58071H-R vs. GenBank_protein
Match: XP_018459308.1 (PREDICTED: uncharacterized protein LOC108830208 [Raphanus sativus])

HSP 1 Score: 361 bits (927), Expect = 1.290e-119
Identity = 174/205 (84.88%), Postives = 185/205 (90.24%), Query Frame = 0

Query:    1 MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVSDRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAHMVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAESINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYLLVVRS 205
            MLV AAQDGNFQIF  AFGIVDAE  PSWEWFFTKLASC+S +  LVI+SDRH AIKSACDKVFPWATRGICYYHLQ+NIVK YK +HLLYLVKGAAYAH VSDFDRYMAE RSANPDLATYL NADVSLWSR YC+GDRYNIKTSNIAESINSALKRARGF + FLLEFIREKLG+WFWKRR+D LSLPTQ+S G+EYLL VRS
Sbjct:  231 MLVAAAQDGNFQIFQLAFGIVDAEYGPSWEWFFTKLASCISHDSSLVIMSDRHEAIKSACDKVFPWATRGICYYHLQENIVKTYKRRHLLYLVKGAAYAHTVSDFDRYMAEIRSANPDLATYLVNADVSLWSRVYCKGDRYNIKTSNIAESINSALKRARGFPIDFLLEFIREKLGRWFWKRRDDALSLPTQNSRGVEYLLAVRS 435

The following BLAST results are available for this feature:

BLAST of BolC9t58071H-R vs. GenBank_protein

BLAST of BolC9t58071H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD32748.1	8.980e-150	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_033148544.1	6.690e-134	91.67	uncharacterized protein LOC117134364 [Brassica rap...	[more]
XP_018454206.1	9.270e-125	83.41	PREDICTED: uncharacterized protein LOC108825412 [R...	[more]
XP_018479508.1	1.430e-123	83.90	PREDICTED: uncharacterized protein LOC108850478 [R...	[more]
XP_018487682.1	2.230e-123	86.83	PREDICTED: uncharacterized protein LOC108858224 [R...	[more]
XP_018435940.1	2.400e-123	87.32	PREDICTED: uncharacterized protein LOC108808265 [R...	[more]
XP_018461526.1	4.790e-121	85.85	PREDICTED: uncharacterized protein LOC108832549 [R...	[more]
XP_018459836.1	9.220e-121	83.90	PREDICTED: uncharacterized protein LOC108830748 [R...	[more]
XP_013623939.1	4.420e-120	83.82	PREDICTED: uncharacterized protein LOC106329876 [B...	[more]
XP_018459308.1	1.290e-119	84.88	PREDICTED: uncharacterized protein LOC108830208 [R...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018289	MULE transposase domain	PFAM	PF10551	MULE	coord: 4..79 e-value: 9.4E-17 score: 61.2
None	No IPR available	PANTHER	PTHR31973:SF106	OS09G0268600 PROTEIN	coord: 2..185
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 2..185

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:49408383..49409000 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t58071H-R	BolC9t58071H-R	Brassica oleracea HDEM	mRNA	C9 49408383..49409000 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t58071H-R-P ID=BolC9t58071H-R-P|Name=BolC9t58071H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=206bp
MLVTAAQDGNFQIFPSAFGIVDAEDEPSWEWFFTKLASCVSDEQPLVIVS
DRHTAIKSACDKVFPWATRGICYYHLQDNIVKKYKGKHLLYLVKGAAYAH
MVSDFDRYMAEKRSANPDLATYLENADVSLWSRFYCQGDRYNIKTSNIAE
SINSALKRARGFLVQFLLEFIREKLGKWFWKRREDVLSLPTQHSLGIEYL
LVVRS.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018289	MULE_transposase_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0004190	aspartic-type endopeptidase activity
GO:0003676	nucleic acid binding

Orthology

View orthology data for BolC9t58071H-R-P