BolSC35t60757H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC35t60757H-R
Unique NameBolSC35t60757H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length36
Homology
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BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: VDD65529.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 77.4 bits (189), Expect = 7.670e-18
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIGGLYVRIILPPIL 35
            MLGITYDSHPRLKRILMPESWIGGLYVRIILPPIL
Sbjct:    1 MLGITYDSHPRLKRILMPESWIGGLYVRIILPPIL 35
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BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: CAP11598.1 (NADH dehydrogenase subunit J, partial [Muraltia aspalatha])

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-9
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIGGLYVRIILPP 33
            MLGI YD+HPR KRILMPESW+G  YV+II PP
Sbjct:   87 MLGIHYDNHPRPKRILMPESWVGWPYVKIISPP 119
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BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: DAD49386.1 (TPA_asm: hypothetical protein HUJ06_019197 [Nelumbo nucifera])

HSP 1 Score: 58.5 bits (140), Expect = 2.390e-9
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIGGLYVRIILPPIL 35
            MLGI+YD+HPRLKRILMPESWIG  ++RI  P  L
Sbjct:  105 MLGISYDNHPRLKRILMPESWIGWPFIRIYCPQFL 139
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BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: CAF1736044.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 55.8 bits (133), Expect = 3.110e-9
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIG 23
            MLGITYDSHPRLKRILMPESWIG
Sbjct:    1 MLGITYDSHPRLKRILMPESWIG 23
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BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: QKX45170.1 (NADH dehydrogenase subunit J, partial [Piqueria trinervia])

HSP 1 Score: 57.8 bits (138), Expect = 5.240e-9
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIGGLYVR 28
            MLGI+YD+HPRLKRILMPESWIG  YVR
Sbjct:  117 MLGISYDNHPRLKRILMPESWIGWPYVR 144
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BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: QKX45212.1 (NADH dehydrogenase subunit J, partial [Tagetes micrantha])

HSP 1 Score: 57.8 bits (138), Expect = 5.240e-9
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIGGLYVR 28
            MLGI+YD+HPRLKRILMPESWIG  YVR
Sbjct:  117 MLGISYDNHPRLKRILMPESWIGWPYVR 144
[Close]
BLAST of BolSC35t60757H-R vs. GenBank_protein
Match: QKX45081.1 (NADH dehydrogenase subunit J, partial [Dahlia coccinea] >QKX45201.1 NADH dehydrogenase subunit J, partial [Simsia amplexicaulis] >QKX45207.1 NADH dehydrogenase subunit J, partial [Stevia origanoides])

HSP 1 Score: 57.8 bits (138), Expect = 5.240e-9
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 
Query:    1 MLGITYDSHPRLKRILMPESWIGGLYVR 28
            MLGI+YD+HPRLKRILMPESWIG  YVR
Sbjct:  117 MLGISYDNHPRLKRILMPESWIGWPYVR 144
The following BLAST results are available for this feature:
BLAST of BolSC35t60757H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 7
Match NameE-valueIdentityDescription
VDD65529.17.670e-18100.00unnamed protein product [Brassica oleracea][more]
CAP11598.11.120e-975.76NADH dehydrogenase subunit J, partial [Muraltia as... [more]
DAD49386.12.390e-971.43TPA_asm: hypothetical protein HUJ06_019197 [Nelumb... [more]
CAF1736044.13.110e-9100.00unnamed protein product [Brassica napus][more]
QKX45170.15.240e-985.71NADH dehydrogenase subunit J, partial [Piqueria tr... [more]
QKX45212.15.240e-985.71NADH dehydrogenase subunit J, partial [Tagetes mic... [more]
QKX45081.15.240e-985.71NADH dehydrogenase subunit J, partial [Dahlia cocc... [more]
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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPFAMPF00329Complex1_30kDacoord: 1..23
e-value: 6.9E-5
score: 23.5
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilySUPERFAMILY143243Nqo5-likecoord: 1..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_35contigBoleracea_scaffold_35:240029..240136 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC35t60757H-RBolSC35t60757H-RBrassica oleracea HDEMmRNABoleracea_scaffold_35 240029..240136 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC35t60757H-R-P ID=BolSC35t60757H-R-P|Name=BolSC35t60757H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=36bp
MLGITYDSHPRLKRILMPESWIGGLYVRIILPPIL.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037232NADH_quin_OxRdtase_su_C/D-like
IPR001268NADH_UbQ_OxRdtase_30kDa_su
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity