BolSC49t61161H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Homology

BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: VDD65303.1 (unnamed protein product, partial [Brassica oleracea] >VDD65384.1 unnamed protein product, partial [Brassica oleracea] >VDD65444.1 unnamed protein product, partial [Brassica oleracea] >VDD65933.1 unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 267 bits (683), Expect = 3.150e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: ASY93398.1 (ribosomal protein L16 [Brassica rapa] >ASY93485.1 ribosomal protein L16 [Brassica rapa subsp. chinensis] >ASY94007.1 ribosomal protein L16 [Brassica oleracea var. capitata] >ASY94094.1 ribosomal protein L16 [Brassica oleracea var. botrytis] >ASY94181.1 ribosomal protein L16 [Brassica oleracea var. gongylodes] >ASY94268.1 ribosomal protein L16 [Brassica oleracea var. italica] >ASY94790.1 ribosomal protein L16 [Brassica juncea subsp. integrifolia])

HSP 1 Score: 267 bits (683), Expect = 3.490e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: YP_009177902.1 (ribosomal protein L16 [Brassica juncea] >ALK26720.1 ribosomal protein L16 [Brassica juncea])

HSP 1 Score: 267 bits (683), Expect = 3.490e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: YP_005089989.1 (rpl16 gene product [Brassica napus] >YP_009553804.1 ribosomal protein L16 [Brassica rapa] >YP_009564612.1 ribosomal protein L16 [Brassica oleracea] >YP_009907398.1 ribosomal protein L16 [Brassica rapa subsp. rapa] >ANW83315.1 ribosomal protein L16 [Brassica napus var. napus] >ASY93572.1 ribosomal protein L16 [Brassica rapa subsp. pekinensis] >ASY94703.1 ribosomal protein L16 [Brassica juncea subsp. integrifolia] >ASY94877.1 ribosomal protein L16 [Brassica juncea] >ACY66275.1 ribosomal protein L16 [Brassica napus])

HSP 1 Score: 267 bits (683), Expect = 3.610e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    5 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 137

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: YP_009000370.1 (rpl16 protein [Arabis alpina] >YP_009353788.1 ribosomal protein L16 [Alyssum desertorum] >YP_009827391.1 ribosomal protein L16 [Arabis scabra] >AQZ25132.1 ribosomal protein L16 [Alyssum desertorum] >QIV22553.1 ribosomal protein L16 [Arabis scabra] >QIV22638.1 ribosomal protein L16 [Arabis scabra] >QIV22723.1 ribosomal protein L16 [Arabis scabra] >QIV22808.1 ribosomal protein L16 [Arabis scabra])

HSP 1 Score: 266 bits (679), Expect = 1.420e-89
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRT+FRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: ANW47827.1 (ribosomal protein L16 [Arabidopsis thaliana] >ASM41962.1 ribosomal protein L16 [Alyssum gmelinii] >QBI37836.1 ribosomal protein L16 [Arabidopsis thaliana])

HSP 1 Score: 266 bits (679), Expect = 1.420e-89
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRT+FRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 NPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 136

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: AKM97954.1 (ribosomal protein L16 [Brassica oleracea var. capitata] >AZQ05859.1 ribosomal protein L16 [Brassica oleracea var. italica] >AZQ05948.1 ribosomal protein L16 [Brassica oleracea var. italica])

HSP 1 Score: 265 bits (678), Expect = 1.830e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query:    2 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    2 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133

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BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: KAF8100524.1 (hypothetical protein N665_0221s0001 [Sinapis alba])

HSP 1 Score: 266 bits (679), Expect = 1.930e-89
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRT+FRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:   13 NPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 145

[Close]

BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: QNQ65450.1 (ribosomal protein L16 [Brassica rapa])

HSP 1 Score: 265 bits (678), Expect = 1.950e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query:    2 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE
Sbjct:    4 PKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 135

[Close]

BLAST of BolSC49t61161H-R vs. GenBank_protein
Match: ASY94355.1 (ribosomal protein L16 [Raphanus raphanistrum subsp. landra] >ASY94442.1 ribosomal protein L16 [Raphanus sativus var. raphanistroides] >ASY94529.1 ribosomal protein L16 [Raphanus sativus var. sativus] >ASY94616.1 ribosomal protein L16 [Raphanus sativus var. sativus])

HSP 1 Score: 265 bits (678), Expect = 2.020e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0

Query:    1 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIISE 133
            NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFII E
Sbjct:    4 NPKRTKFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIICE 136

The following BLAST results are available for this feature:

BLAST of BolSC49t61161H-R vs. GenBank_protein

BLAST of BolSC49t61161H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
VDD65303.1	3.150e-90	100.00	unnamed protein product, partial [Brassica olerace...	[more]
ASY93398.1	3.490e-90	100.00	ribosomal protein L16 [Brassica rapa] >ASY93485.1 ...	[more]
YP_009177902.1	3.490e-90	100.00	ribosomal protein L16 [Brassica juncea] >ALK26720....	[more]
YP_005089989.1	3.610e-90	100.00	rpl16 gene product [Brassica napus] >YP_009553804....	[more]
YP_009000370.1	1.420e-89	98.50	rpl16 protein [Arabis alpina] >YP_009353788.1 ribo...	[more]
ANW47827.1	1.420e-89	98.50	ribosomal protein L16 [Arabidopsis thaliana] >ASM4...	[more]
AKM97954.1	1.830e-89	100.00	ribosomal protein L16 [Brassica oleracea var. capi...	[more]
KAF8100524.1	1.930e-89	98.50	hypothetical protein N665_0221s0001 [Sinapis alba]	[more]
QNQ65450.1	1.950e-89	100.00	ribosomal protein L16 [Brassica rapa]	[more]
ASY94355.1	2.020e-89	99.25	ribosomal protein L16 [Raphanus raphanistrum subsp...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome