BnaA01T0068700WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0068700WE
Unique NameBnaA01T0068700WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:4665001..4667024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0068700WEBnaA01G0068700WEBrassica napus Westargenewestarv0_A01 4665001..4667024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0068700WE.exon1BnaA01T0068700WE.exon1Brassica napus Westarexonwestarv0_A01 4665001..4665934 +
BnaA01T0068700WE.exon2BnaA01T0068700WE.exon2Brassica napus Westarexonwestarv0_A01 4666444..4667024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0068700WEcds.BnaA01T0068700WEBrassica napus WestarCDSwestarv0_A01 4665001..4665934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0068700WEBnaA01T0068700WE-PBrassica napus Westarpolypeptidewestarv0_A01 4665001..4667024 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0068700WE ID=BnaA01T0068700WE|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=mRNA|length=1515bp|location=Sequence derived from alignment at westarv0_A01:4665001..4667024+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCATGGACATCATCCCAATTCCTGTATGAAGAAACCAAACCATG
CGGTATTCAGTTCCTGGAACGTTTCAAGCGTTCAGGAAGACTCTCCTTCA
AGCAATACCAAGCCCTTGTCTTTACCCTAACCTTCGTCGCTTACATCGCC
TTCCACGCTGCTAGAAAGCCTAACAGCATTGTCAAAGGCACCCTTTCCGC
GTCAACAGTCAGAGGCGGCTGGTCTCCCTTTGATGGACCAGACGGAACAG
CCTTGCTAGGACAAATCGACTTGGCTTTCCTCTCTGTCTACGCGGTTGGG
ATGTTTGTAGCCGGTCACTTGGGAGACCGTCTGGATCTCAGGACGTTTCT
GACCATCGGTATGATAGGCACCGGCCTCTTCACAGCTCTCTTTGGAGTCG
CCTTCTGGGCCAACTTCCACAGCTTCTACTACTTCTTGGCGGTTCAGGTT
CTGGCTGGGTGGTTTCAGTCAATAGGTTGGCCTTGTGTTGTGGCCGTGCT
TGGTAACTGGTTTGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGA
GTGCTCATACTTCACTTGGTAACATCACAGGCTCTCTACTCGCATCAGGT
CTGCTTAGGTTTGGGTGGGGCTGGTCGTTTCTTGGACCAGCTTTGCTCAT
AACTTTCCTCGGTCTCGTTGTATACTTTTTCTTGCCGGTGAACCCTCCAA
CCGTTGGAGCTGAGAGAGATGGGACTGAAGTTGACTCCACCATGAGGCTT
GGTGACACCATTACAGAGAGCTTCTTGGGGTCTAGAATGAGTACTGGCTT
CGATAGAAAAGCAATAGGGTTCATGGCTGCTTGGAAGATCCCTGGTGTTG
CTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCTTACACTTTC
CTCTACTGGCTTCCTTTCTACGTCAGCCACAACATGATTGGAGGAGAGTA
CCTGTCCGAAGAGACATCAGGAAACTTGTCAACACTCTTCGACGTTGGAG
GCGTGGTGGGAGGAGTCTTAGCCGGATACATCTCTGACCAGCTCGACGGC
AGAGCCATCACAGCAGCAGGATTCATCTACCTAGCCATCCCAGCCCTCTT
CCTATACAGAATCTACGGACACATCTCATTGACAATCAATATCATCCTCA
TGTTCACGTCAGGAGTCTTTGTCAACGGACCTTTTGCTCTCATCACAACA
GCTGTCTCAGCTGATCTCGGTACGCACAAGTCTCTCAAAGGCAATGCTAG
AGCCTTGGCTACGGTTACAGCTATTATAGACGGTACAGGATCAGTTGGTG
CTGCGATTGGACCGGTTTTAACCGGTTATATCTCAGCGATTAGCTGGGAT
GCAGTGTTTTACATGCTGATGACTGCTGCTTTTATATCTGGCTTGTTGCT
TACTAAGCTTATTGTAACGGAAGTGAAAGCTATGTTGTATGGATCAACCG
ATGAAGGTGAAGCGGCTACTTCATCGTCGCCAGCAACCAGAGCTCCCATT
GATGTTCTCCTCTAA
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protein sequence of BnaA01T0068700WE

>BnaA01T0068700WE-P ID=BnaA01T0068700WE-P|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=polypeptide|length=505bp
MASWTSSQFLYEETKPCGIQFLERFKRSGRLSFKQYQALVFTLTFVAYIA
FHAARKPNSIVKGTLSASTVRGGWSPFDGPDGTALLGQIDLAFLSVYAVG
MFVAGHLGDRLDLRTFLTIGMIGTGLFTALFGVAFWANFHSFYYFLAVQV
LAGWFQSIGWPCVVAVLGNWFDKKRRGMIMGVWSAHTSLGNITGSLLASG
LLRFGWGWSFLGPALLITFLGLVVYFFLPVNPPTVGAERDGTEVDSTMRL
GDTITESFLGSRMSTGFDRKAIGFMAAWKIPGVAPFAFCLFFTKLVSYTF
LYWLPFYVSHNMIGGEYLSEETSGNLSTLFDVGGVVGGVLAGYISDQLDG
RAITAAGFIYLAIPALFLYRIYGHISLTINIILMFTSGVFVNGPFALITT
AVSADLGTHKSLKGNARALATVTAIIDGTGSVGAAIGPVLTGYISAISWD
AVFYMLMTAAFISGLLLTKLIVTEVKAMLYGSTDEGEAATSSSPATRAPI
DVLL.
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mRNA from alignment at westarv0_A01:4665001..4667024+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0068700WE ID=BnaA01T0068700WE|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=mRNA|length=2024bp|location=Sequence derived from alignment at westarv0_A01:4665001..4667024+ (Brassica napus Westar)
ATGGCGTCATGGACATCATCCCAATTCCTGTATGAAGAAACCAAACCATG CGGTATTCAGTTCCTGGAACGTTTCAAGCGTTCAGGAAGACTCTCCTTCA AGCAATACCAAGCCCTTGTCTTTACCCTAACCTTCGTCGCTTACATCGCC TTCCACGCTGCTAGAAAGCCTAACAGCATTGTCAAAGGCACCCTTTCCGC GTCAACAGTCAGAGGCGGCTGGTCTCCCTTTGATGGACCAGACGGAACAG CCTTGCTAGGACAAATCGACTTGGCTTTCCTCTCTGTCTACGCGGTTGGG ATGTTTGTAGCCGGTCACTTGGGAGACCGTCTGGATCTCAGGACGTTTCT GACCATCGGTATGATAGGCACCGGCCTCTTCACAGCTCTCTTTGGAGTCG CCTTCTGGGCCAACTTCCACAGCTTCTACTACTTCTTGGCGGTTCAGGTT CTGGCTGGGTGGTTTCAGTCAATAGGTTGGCCTTGTGTTGTGGCCGTGCT TGGTAACTGGTTTGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGA GTGCTCATACTTCACTTGGTAACATCACAGGCTCTCTACTCGCATCAGGT CTGCTTAGGTTTGGGTGGGGCTGGTCGTTTCTTGGACCAGCTTTGCTCAT AACTTTCCTCGGTCTCGTTGTATACTTTTTCTTGCCGGTGAACCCTCCAA CCGTTGGAGCTGAGAGAGATGGGACTGAAGTTGACTCCACCATGAGGCTT GGTGACACCATTACAGAGAGCTTCTTGGGGTCTAGAATGAGTACTGGCTT CGATAGAAAAGCAATAGGGTTCATGGCTGCTTGGAAGATCCCTGGTGTTG CTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCTTACACTTTC CTCTACTGGCTTCCTTTCTACGTCAGCCACAACAGTACGTTCTTCTTCAT CATCTCTCAACACATTTTTTAGGCCTACAGGTTCGGGTAGTCGGGTGACA TAGTTCTGTTAGACAATTTTGCCGGATTAAACCGTTAAAAAGTTTGGTTT GGTTTTAGGTAGTTTGGTTTTTAAATTTTTTACCAAAACTAACTGAAGTT TTTGGTTTCAATTATATTTTGGTTAAAAATTTGGGTAAAGTAGATTAAAT TCGGGTAATTCCGGTTAATTCATTTCAAAGTTTTGGTTAAGTCGGTTAGT TAACAATTTTTGTTTTGAGAAAAAAGAACTAACCAATTACTAGTCGAACC GAACTAACCAAAATTTTGGCTTGGTTGGTTTGGCGGGTTCGGTTAAAAAT CTCAGCTCTACATTTTTTTTTTATTGTGTGCCAATTGCCAAACCTAGTAA TAATCTCCTTAGACTATGAGCAAGAGCCGATTGCTAAATCTCTCAACACA TTTTGTGCCTTGTTATATGTATGGTCTTGTTTACTTGGTGCAGTGATTGG AGGAGAGTACCTGTCCGAAGAGACATCAGGAAACTTGTCAACACTCTTCG ACGTTGGAGGCGTGGTGGGAGGAGTCTTAGCCGGATACATCTCTGACCAG CTCGACGGCAGAGCCATCACAGCAGCAGGATTCATCTACCTAGCCATCCC AGCCCTCTTCCTATACAGAATCTACGGACACATCTCATTGACAATCAATA TCATCCTCATGTTCACGTCAGGAGTCTTTGTCAACGGACCTTTTGCTCTC ATCACAACAGCTGTCTCAGCTGATCTCGGTACGCACAAGTCTCTCAAAGG CAATGCTAGAGCCTTGGCTACGGTTACAGCTATTATAGACGGTACAGGAT CAGTTGGTGCTGCGATTGGACCGGTTTTAACCGGTTATATCTCAGCGATT AGCTGGGATGCAGTGTTTTACATGCTGATGACTGCTGCTTTTATATCTGG CTTGTTGCTTACTAAGCTTATTGTAACGGAAGTGAAAGCTATGTTGTATG GATCAACCGATGAAGGTGAAGCGGCTACTTCATCGTCGCCAGCAACCAGA GCTCCCATTGATGTTCTCCTCTAA
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Coding sequence (CDS) from alignment at westarv0_A01:4665001..4667024+

>BnaA01T0068700WE ID=BnaA01T0068700WE|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=CDS|length=1515bp|location=Sequence derived from alignment at westarv0_A01:4665001..4667024+ (Brassica napus Westar)
ATGGCGTCATGGACATCATCCCAATTCCTGTATGAAGAAACCAAACCATG
CGGTATTCAGTTCCTGGAACGTTTCAAGCGTTCAGGAAGACTCTCCTTCA
AGCAATACCAAGCCCTTGTCTTTACCCTAACCTTCGTCGCTTACATCGCC
TTCCACGCTGCTAGAAAGCCTAACAGCATTGTCAAAGGCACCCTTTCCGC
GTCAACAGTCAGAGGCGGCTGGTCTCCCTTTGATGGACCAGACGGAACAG
CCTTGCTAGGACAAATCGACTTGGCTTTCCTCTCTGTCTACGCGGTTGGG
ATGTTTGTAGCCGGTCACTTGGGAGACCGTCTGGATCTCAGGACGTTTCT
GACCATCGGTATGATAGGCACCGGCCTCTTCACAGCTCTCTTTGGAGTCG
CCTTCTGGGCCAACTTCCACAGCTTCTACTACTTCTTGGCGGTTCAGGTT
CTGGCTGGGTGGTTTCAGTCAATAGGTTGGCCTTGTGTTGTGGCCGTGCT
TGGTAACTGGTTTGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGA
GTGCTCATACTTCACTTGGTAACATCACAGGCTCTCTACTCGCATCAGGT
CTGCTTAGGTTTGGGTGGGGCTGGTCGTTTCTTGGACCAGCTTTGCTCAT
AACTTTCCTCGGTCTCGTTGTATACTTTTTCTTGCCGGTGAACCCTCCAA
CCGTTGGAGCTGAGAGAGATGGGACTGAAGTTGACTCCACCATGAGGCTT
GGTGACACCATTACAGAGAGCTTCTTGGGGTCTAGAATGAGTACTGGCTT
CGATAGAAAAGCAATAGGGTTCATGGCTGCTTGGAAGATCCCTGGTGTTG
CTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCTTACACTTTC
CTCTACTGGCTTCCTTTCTACGTCAGCCACAACATGATTGGAGGAGAGTA
CCTGTCCGAAGAGACATCAGGAAACTTGTCAACACTCTTCGACGTTGGAG
GCGTGGTGGGAGGAGTCTTAGCCGGATACATCTCTGACCAGCTCGACGGC
AGAGCCATCACAGCAGCAGGATTCATCTACCTAGCCATCCCAGCCCTCTT
CCTATACAGAATCTACGGACACATCTCATTGACAATCAATATCATCCTCA
TGTTCACGTCAGGAGTCTTTGTCAACGGACCTTTTGCTCTCATCACAACA
GCTGTCTCAGCTGATCTCGGTACGCACAAGTCTCTCAAAGGCAATGCTAG
AGCCTTGGCTACGGTTACAGCTATTATAGACGGTACAGGATCAGTTGGTG
CTGCGATTGGACCGGTTTTAACCGGTTATATCTCAGCGATTAGCTGGGAT
GCAGTGTTTTACATGCTGATGACTGCTGCTTTTATATCTGGCTTGTTGCT
TACTAAGCTTATTGTAACGGAAGTGAAAGCTATGTTGTATGGATCAACCG
ATGAAGGTGAAGCGGCTACTTCATCGTCGCCAGCAACCAGAGCTCCCATT
GATGTTCTCCTCTAA
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