BnaA01T0068700WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0068700WE
Unique Name	BnaA01T0068700WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:4665001..4667024 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0068700WE	BnaA01G0068700WE	Brassica napus Westar	gene	westarv0_A01 4665001..4667024 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0068700WE.exon1	BnaA01T0068700WE.exon1	Brassica napus Westar	exon	westarv0_A01 4665001..4665934 +
BnaA01T0068700WE.exon2	BnaA01T0068700WE.exon2	Brassica napus Westar	exon	westarv0_A01 4666444..4667024 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0068700WE	cds.BnaA01T0068700WE	Brassica napus Westar	CDS	westarv0_A01 4665001..4665934 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0068700WE	BnaA01T0068700WE-P	Brassica napus Westar	polypeptide	westarv0_A01 4665001..4667024 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:4665001..4667024+
coding sequence from alignment at westarv0_A01:4665001..4667024+

spliced messenger RNA

>BnaA01T0068700WE ID=BnaA01T0068700WE|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=mRNA|length=1515bp|location=Sequence derived from alignment at westarv0_A01:4665001..4667024+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCATGGACATCATCCCAATTCCTGTATGAAGAAACCAAACCATG
CGGTATTCAGTTCCTGGAACGTTTCAAGCGTTCAGGAAGACTCTCCTTCA
AGCAATACCAAGCCCTTGTCTTTACCCTAACCTTCGTCGCTTACATCGCC
TTCCACGCTGCTAGAAAGCCTAACAGCATTGTCAAAGGCACCCTTTCCGC
GTCAACAGTCAGAGGCGGCTGGTCTCCCTTTGATGGACCAGACGGAACAG
CCTTGCTAGGACAAATCGACTTGGCTTTCCTCTCTGTCTACGCGGTTGGG
ATGTTTGTAGCCGGTCACTTGGGAGACCGTCTGGATCTCAGGACGTTTCT
GACCATCGGTATGATAGGCACCGGCCTCTTCACAGCTCTCTTTGGAGTCG
CCTTCTGGGCCAACTTCCACAGCTTCTACTACTTCTTGGCGGTTCAGGTT
CTGGCTGGGTGGTTTCAGTCAATAGGTTGGCCTTGTGTTGTGGCCGTGCT
TGGTAACTGGTTTGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGA
GTGCTCATACTTCACTTGGTAACATCACAGGCTCTCTACTCGCATCAGGT
CTGCTTAGGTTTGGGTGGGGCTGGTCGTTTCTTGGACCAGCTTTGCTCAT
AACTTTCCTCGGTCTCGTTGTATACTTTTTCTTGCCGGTGAACCCTCCAA
CCGTTGGAGCTGAGAGAGATGGGACTGAAGTTGACTCCACCATGAGGCTT
GGTGACACCATTACAGAGAGCTTCTTGGGGTCTAGAATGAGTACTGGCTT
CGATAGAAAAGCAATAGGGTTCATGGCTGCTTGGAAGATCCCTGGTGTTG
CTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCTTACACTTTC
CTCTACTGGCTTCCTTTCTACGTCAGCCACAACATGATTGGAGGAGAGTA
CCTGTCCGAAGAGACATCAGGAAACTTGTCAACACTCTTCGACGTTGGAG
GCGTGGTGGGAGGAGTCTTAGCCGGATACATCTCTGACCAGCTCGACGGC
AGAGCCATCACAGCAGCAGGATTCATCTACCTAGCCATCCCAGCCCTCTT
CCTATACAGAATCTACGGACACATCTCATTGACAATCAATATCATCCTCA
TGTTCACGTCAGGAGTCTTTGTCAACGGACCTTTTGCTCTCATCACAACA
GCTGTCTCAGCTGATCTCGGTACGCACAAGTCTCTCAAAGGCAATGCTAG
AGCCTTGGCTACGGTTACAGCTATTATAGACGGTACAGGATCAGTTGGTG
CTGCGATTGGACCGGTTTTAACCGGTTATATCTCAGCGATTAGCTGGGAT
GCAGTGTTTTACATGCTGATGACTGCTGCTTTTATATCTGGCTTGTTGCT
TACTAAGCTTATTGTAACGGAAGTGAAAGCTATGTTGTATGGATCAACCG
ATGAAGGTGAAGCGGCTACTTCATCGTCGCCAGCAACCAGAGCTCCCATT
GATGTTCTCCTCTAA

protein sequence of BnaA01T0068700WE

>BnaA01T0068700WE-P ID=BnaA01T0068700WE-P|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=polypeptide|length=505bp
MASWTSSQFLYEETKPCGIQFLERFKRSGRLSFKQYQALVFTLTFVAYIA
FHAARKPNSIVKGTLSASTVRGGWSPFDGPDGTALLGQIDLAFLSVYAVG
MFVAGHLGDRLDLRTFLTIGMIGTGLFTALFGVAFWANFHSFYYFLAVQV
LAGWFQSIGWPCVVAVLGNWFDKKRRGMIMGVWSAHTSLGNITGSLLASG
LLRFGWGWSFLGPALLITFLGLVVYFFLPVNPPTVGAERDGTEVDSTMRL
GDTITESFLGSRMSTGFDRKAIGFMAAWKIPGVAPFAFCLFFTKLVSYTF
LYWLPFYVSHNMIGGEYLSEETSGNLSTLFDVGGVVGGVLAGYISDQLDG
RAITAAGFIYLAIPALFLYRIYGHISLTINIILMFTSGVFVNGPFALITT
AVSADLGTHKSLKGNARALATVTAIIDGTGSVGAAIGPVLTGYISAISWD
AVFYMLMTAAFISGLLLTKLIVTEVKAMLYGSTDEGEAATSSSPATRAPI
DVLL.

mRNA from alignment at westarv0_A01:4665001..4667024+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0068700WE ID=BnaA01T0068700WE|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=mRNA|length=2024bp|location=Sequence derived from alignment at westarv0_A01:4665001..4667024+ (Brassica napus Westar)
ATGGCGTCATGGACATCATCCCAATTCCTGTATGAAGAAACCAAACCATG
CGGTATTCAGTTCCTGGAACGTTTCAAGCGTTCAGGAAGACTCTCCTTCA
AGCAATACCAAGCCCTTGTCTTTACCCTAACCTTCGTCGCTTACATCGCC
TTCCACGCTGCTAGAAAGCCTAACAGCATTGTCAAAGGCACCCTTTCCGC
GTCAACAGTCAGAGGCGGCTGGTCTCCCTTTGATGGACCAGACGGAACAG
CCTTGCTAGGACAAATCGACTTGGCTTTCCTCTCTGTCTACGCGGTTGGG
ATGTTTGTAGCCGGTCACTTGGGAGACCGTCTGGATCTCAGGACGTTTCT
GACCATCGGTATGATAGGCACCGGCCTCTTCACAGCTCTCTTTGGAGTCG
CCTTCTGGGCCAACTTCCACAGCTTCTACTACTTCTTGGCGGTTCAGGTT
CTGGCTGGGTGGTTTCAGTCAATAGGTTGGCCTTGTGTTGTGGCCGTGCT
TGGTAACTGGTTTGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGA
GTGCTCATACTTCACTTGGTAACATCACAGGCTCTCTACTCGCATCAGGT
CTGCTTAGGTTTGGGTGGGGCTGGTCGTTTCTTGGACCAGCTTTGCTCAT
AACTTTCCTCGGTCTCGTTGTATACTTTTTCTTGCCGGTGAACCCTCCAA
CCGTTGGAGCTGAGAGAGATGGGACTGAAGTTGACTCCACCATGAGGCTT
GGTGACACCATTACAGAGAGCTTCTTGGGGTCTAGAATGAGTACTGGCTT
CGATAGAAAAGCAATAGGGTTCATGGCTGCTTGGAAGATCCCTGGTGTTG
CTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCTTACACTTTC
CTCTACTGGCTTCCTTTCTACGTCAGCCACAACAGTACGTTCTTCTTCAT
CATCTCTCAACACATTTTTTAGGCCTACAGGTTCGGGTAGTCGGGTGACA
TAGTTCTGTTAGACAATTTTGCCGGATTAAACCGTTAAAAAGTTTGGTTT
GGTTTTAGGTAGTTTGGTTTTTAAATTTTTTACCAAAACTAACTGAAGTT
TTTGGTTTCAATTATATTTTGGTTAAAAATTTGGGTAAAGTAGATTAAAT
TCGGGTAATTCCGGTTAATTCATTTCAAAGTTTTGGTTAAGTCGGTTAGT
TAACAATTTTTGTTTTGAGAAAAAAGAACTAACCAATTACTAGTCGAACC
GAACTAACCAAAATTTTGGCTTGGTTGGTTTGGCGGGTTCGGTTAAAAAT
CTCAGCTCTACATTTTTTTTTTATTGTGTGCCAATTGCCAAACCTAGTAA
TAATCTCCTTAGACTATGAGCAAGAGCCGATTGCTAAATCTCTCAACACA
TTTTGTGCCTTGTTATATGTATGGTCTTGTTTACTTGGTGCAGTGATTGG
AGGAGAGTACCTGTCCGAAGAGACATCAGGAAACTTGTCAACACTCTTCG
ACGTTGGAGGCGTGGTGGGAGGAGTCTTAGCCGGATACATCTCTGACCAG
CTCGACGGCAGAGCCATCACAGCAGCAGGATTCATCTACCTAGCCATCCC
AGCCCTCTTCCTATACAGAATCTACGGACACATCTCATTGACAATCAATA
TCATCCTCATGTTCACGTCAGGAGTCTTTGTCAACGGACCTTTTGCTCTC
ATCACAACAGCTGTCTCAGCTGATCTCGGTACGCACAAGTCTCTCAAAGG
CAATGCTAGAGCCTTGGCTACGGTTACAGCTATTATAGACGGTACAGGAT
CAGTTGGTGCTGCGATTGGACCGGTTTTAACCGGTTATATCTCAGCGATT
AGCTGGGATGCAGTGTTTTACATGCTGATGACTGCTGCTTTTATATCTGG
CTTGTTGCTTACTAAGCTTATTGTAACGGAAGTGAAAGCTATGTTGTATG
GATCAACCGATGAAGGTGAAGCGGCTACTTCATCGTCGCCAGCAACCAGA
GCTCCCATTGATGTTCTCCTCTAA

Coding sequence (CDS) from alignment at westarv0_A01:4665001..4667024+

>BnaA01T0068700WE ID=BnaA01T0068700WE|Name=BnaA01T0068700WE|organism=Brassica napus Westar|type=CDS|length=1515bp|location=Sequence derived from alignment at westarv0_A01:4665001..4667024+ (Brassica napus Westar)
ATGGCGTCATGGACATCATCCCAATTCCTGTATGAAGAAACCAAACCATG
CGGTATTCAGTTCCTGGAACGTTTCAAGCGTTCAGGAAGACTCTCCTTCA
AGCAATACCAAGCCCTTGTCTTTACCCTAACCTTCGTCGCTTACATCGCC
TTCCACGCTGCTAGAAAGCCTAACAGCATTGTCAAAGGCACCCTTTCCGC
GTCAACAGTCAGAGGCGGCTGGTCTCCCTTTGATGGACCAGACGGAACAG
CCTTGCTAGGACAAATCGACTTGGCTTTCCTCTCTGTCTACGCGGTTGGG
ATGTTTGTAGCCGGTCACTTGGGAGACCGTCTGGATCTCAGGACGTTTCT
GACCATCGGTATGATAGGCACCGGCCTCTTCACAGCTCTCTTTGGAGTCG
CCTTCTGGGCCAACTTCCACAGCTTCTACTACTTCTTGGCGGTTCAGGTT
CTGGCTGGGTGGTTTCAGTCAATAGGTTGGCCTTGTGTTGTGGCCGTGCT
TGGTAACTGGTTTGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGA
GTGCTCATACTTCACTTGGTAACATCACAGGCTCTCTACTCGCATCAGGT
CTGCTTAGGTTTGGGTGGGGCTGGTCGTTTCTTGGACCAGCTTTGCTCAT
AACTTTCCTCGGTCTCGTTGTATACTTTTTCTTGCCGGTGAACCCTCCAA
CCGTTGGAGCTGAGAGAGATGGGACTGAAGTTGACTCCACCATGAGGCTT
GGTGACACCATTACAGAGAGCTTCTTGGGGTCTAGAATGAGTACTGGCTT
CGATAGAAAAGCAATAGGGTTCATGGCTGCTTGGAAGATCCCTGGTGTTG
CTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCTTACACTTTC
CTCTACTGGCTTCCTTTCTACGTCAGCCACAACATGATTGGAGGAGAGTA
CCTGTCCGAAGAGACATCAGGAAACTTGTCAACACTCTTCGACGTTGGAG
GCGTGGTGGGAGGAGTCTTAGCCGGATACATCTCTGACCAGCTCGACGGC
AGAGCCATCACAGCAGCAGGATTCATCTACCTAGCCATCCCAGCCCTCTT
CCTATACAGAATCTACGGACACATCTCATTGACAATCAATATCATCCTCA
TGTTCACGTCAGGAGTCTTTGTCAACGGACCTTTTGCTCTCATCACAACA
GCTGTCTCAGCTGATCTCGGTACGCACAAGTCTCTCAAAGGCAATGCTAG
AGCCTTGGCTACGGTTACAGCTATTATAGACGGTACAGGATCAGTTGGTG
CTGCGATTGGACCGGTTTTAACCGGTTATATCTCAGCGATTAGCTGGGAT
GCAGTGTTTTACATGCTGATGACTGCTGCTTTTATATCTGGCTTGTTGCT
TACTAAGCTTATTGTAACGGAAGTGAAAGCTATGTTGTATGGATCAACCG
ATGAAGGTGAAGCGGCTACTTCATCGTCGCCAGCAACCAGAGCTCCCATT
GATGTTCTCCTCTAA

Orthology

View orthology data for BnaA01T0068700WE