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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BnaA01G0065100WE | BnaA01G0065100WE | Brassica napus Westar | gene | westarv0_A01 4491139..4493785 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0065100WE.exon10 | BnaA01T0065100WE.exon10 | Brassica napus Westar | exon | westarv0_A01 4491139..4491895 - |
BnaA01T0065100WE.exon9 | BnaA01T0065100WE.exon9 | Brassica napus Westar | exon | westarv0_A01 4491984..4492072 - |
BnaA01T0065100WE.exon8 | BnaA01T0065100WE.exon8 | Brassica napus Westar | exon | westarv0_A01 4492161..4492346 - |
BnaA01T0065100WE.exon7 | BnaA01T0065100WE.exon7 | Brassica napus Westar | exon | westarv0_A01 4492449..4492523 - |
BnaA01T0065100WE.exon6 | BnaA01T0065100WE.exon6 | Brassica napus Westar | exon | westarv0_A01 4492617..4492799 - |
BnaA01T0065100WE.exon5 | BnaA01T0065100WE.exon5 | Brassica napus Westar | exon | westarv0_A01 4492916..4492964 - |
BnaA01T0065100WE.exon4 | BnaA01T0065100WE.exon4 | Brassica napus Westar | exon | westarv0_A01 4493102..4493234 - |
BnaA01T0065100WE.exon3 | BnaA01T0065100WE.exon3 | Brassica napus Westar | exon | westarv0_A01 4493335..4493416 - |
BnaA01T0065100WE.exon2 | BnaA01T0065100WE.exon2 | Brassica napus Westar | exon | westarv0_A01 4493504..4493559 - |
BnaA01T0065100WE.exon1 | BnaA01T0065100WE.exon1 | Brassica napus Westar | exon | westarv0_A01 4493710..4493785 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0065100WE.utr3p1 | BnaA01T0065100WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 4491139..4491342 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BnaA01T0065100WE | cds.BnaA01T0065100WE | Brassica napus Westar | CDS | westarv0_A01 4493710..4493785 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0065100WE ID=BnaA01T0065100WE|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=mRNA|length=1686bp|location=Sequence derived from alignment at westarv0_A01:4491139..4493785- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCATCATCATCTGC TCTCGCGCTCCGCAGCTCACCCACTGCTAGCTTAAGATGTCAGAATGTAG CTTGTCCAAAAACCACTTCCTCCTTTCAAGAGCTATCTGTGAGACGAAGC CAGCTTGTTGGCAATGCTCTTGCTACTGGTAATTTTCCCGCAACCCGCGC CTGCAAGAATCAAGCTATTCGAGCTGTTCTCTCCAGTGATGGACAAGCTG CTGATCCAAAGGGTGCCGGGCTTCGTGGCAAACTGAAAAAGGTCGTTCTT GCTTACAGTGGAGGCTTAGACACCTCTGTCATCGTGCCATGGCTTAAGGA AAACTATGGCTGTGAAGTTGTGTGTTTCACCGCAGATGTTGGTCAGGGCA TAAAAGAGTTGGATGGTTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTCT CAGTTGGTCGTTAAGGATCTCACCGAGGAGTTTGTAAAAGATTACATATT CCCTTGTCTAAGAGCTGGTGCCATCTACGAACGAAAATACCTGCTTGGTA CCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTAGATGTAGCAGCA GAAGTTGGAGCTGACGCTGTTGCACATGGGTGTACTGGCAAAGGAAATGA CCAGGTTCGGTTTGAGCTGACCTTCTTTTCGCTAAACCCTGAACTTAAAG TTGTGGCACCATGGAGAGAATGGGAGATCCAAGGCAGAGAAGACGCTATT GAGTATGCCAAGAAGCATAACGTTCCTGTCCCCGTGACAAAGAAATCCAT TTACAGCCGTGACAGGAACCTCTGGCACCTTAGTCACGAGGGTGATATAT TGGAAGATCCAGCAAACGAGCCTAAGAAAGATATGTACATGATGAGTGTA GATCCCGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGA ATCTGGACTTCCAGTGTCCTTCAACGGGAAGGCTCTCTCTCCAGCCACCC TTCTCTCTGAGCTAAACGCAATAGGAGGAAAACACGGCATTGGCCGTATC GACATGGTGGAGAACCGTCTTGTCGGGATGAAGTCACGCGGTGTCTACGA AACCCCAGGAGGCACCATCCTCTTTGCAGCCGTGCAGGAGCTAGAGTCCC TCACTCTAGACAGAGAGAGCATTCAGGTGAAAGACTCATTAGCTCTGAAG TACGCAGAGATGGTTTACGCAGGAAGGTGGTTTGATCCGCTTAAGGAGTC CATGGACGCTTTCATGGAGAAGTTAACCGAGAAAACCACGGGATCCGTTA CGCTGAAGCTGTACAAAGGGTCAGTGTCGGTGACAGGGCGTAAGAGTCCG AACAGTCTGTACAGACAGGACATATCTTCGTTTGAAGGGAGTGAGATCTA CAACCAAGCGGATGCTGCTGGGTTTATTCGTCTTTATGGACTTCCTATGA GAGTTAGAGCGATGCTTGAGAAAGGCATCTAGAGAGAATTGTTTCACTCA CCATCACGTCTAGTTGGAGTTGAGAGTCTATTTGAATGACATTAGATGAT CTCTTGTTGTGTTCAAAGGTTTTATGCGTTTAGCTTCCGGAATAATTGTG TTATTTTTCTATGAATTGAATAATGTGTTACTGTGAATGATGTAACTTAC GGTTGCATTAACAACTTAATTAAAGTTTTTTAGCAC back to topprotein sequence of BnaA01T0065100WE >BnaA01T0065100WE-P ID=BnaA01T0065100WE-P|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=polypeptide|length=494bp
MAEISATSFPSSSSSSALALRSSPTASLRCQNVACPKTTSSFQELSVRRS QLVGNALATGNFPATRACKNQAIRAVLSSDGQAADPKGAGLRGKLKKVVL AYSGGLDTSVIVPWLKENYGCEVVCFTADVGQGIKELDGLEQKAKASGAS QLVVKDLTEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAA EVGADAVAHGCTGKGNDQVRFELTFFSLNPELKVVAPWREWEIQGREDAI EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYMMSV DPEDAPDQPEYIEIGIESGLPVSFNGKALSPATLLSELNAIGGKHGIGRI DMVENRLVGMKSRGVYETPGGTILFAAVQELESLTLDRESIQVKDSLALK YAEMVYAGRWFDPLKESMDAFMEKLTEKTTGSVTLKLYKGSVSVTGRKSP NSLYRQDISSFEGSEIYNQADAAGFIRLYGLPMRVRAMLEKGI. back to topmRNA from alignment at westarv0_A01:4491139..4493785- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0065100WE ID=BnaA01T0065100WE|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=mRNA|length=2647bp|location=Sequence derived from alignment at westarv0_A01:4491139..4493785- (Brassica napus Westar) ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCATCATCATCTGC
TCTCGCGCTCCGCAGCTCACCCACTGGTTATCTCTCTCTCCTCCATTTCC
TTTATCGCGCTTTCCTCATCTTCTAGTTCAAAATTTGCAAATGGTTCTCT
CAGTTTTTGATCTCTGTTATTTTCCAAAAGTCTAATCGGAATGTAATTGA
TATGTGTATCTAATATATTCCCGCAGCTAGCTTAAGATGTCAGAATGTAG
CTTGTCCAAAAACCACTTCCTCCTTTCAAGAGGTATATATTCCAAATTGA
AATTGATTCTTATTCATGCGCCGATCTCGTATCTAAAATCCTACACGACC
TTGCTTGTCTGAAATGCAGCTATCTGTGAGACGAAGCCAGCTTGTTGGCA
ATGCTCTTGCTACTGGTAATTTTCCCGCAACCCGCGCCTGCAAGAATCAA
GGTGAAGTCACAGTCTTTATTTCTTCAAAGTCACAGTCTTTGTTTCCTCC
CATGAATCATCGTTCATGCTAAAACACTTTGGGGTCTTGAATACTGCGCA
GCTATTCGAGCTGTTCTCTCCAGTGATGGACAAGCTGCTGATCCAAAGGG
TGCCGGGCTTCGTGGCAAACTGAAAAAGGTCGTTCTTGCTTACAGTGGAG
GCTTAGACACCTCTGTCATCGTGCCATGGCTTAAGTACGTTATTTCCCTT
TTCTCTAGCAAGAATAACTTCATCCTCTGGTTTAGAAACAATCAGTTTAG
ATAGCTTGTTGTTTCATGAACGTTTCTTCTGTTCACTACTCTTACATTAT
ATTATTTGTTGTGTTCCGCAGGGAAAACTATGGCTGTGAAGTTGTGTGTT
TCACCGCAGATGTTGGTCAGGTACATACACTACTACTTAAAACCCAATTG
CTTACTAATTTTAGTTGAGAAATGAAGTTTTGTGTAGCATTTTCGAGTCA
TGTATTCTCAATCTCTAAATGCTTTGATCTATGAAGGGCATAAAAGAGTT
GGATGGTTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCG
TTAAGGATCTCACCGAGGAGTTTGTAAAAGATTACATATTCCCTTGTCTA
AGAGCTGGTGCCATCTACGAACGAAAATACCTGCTTGGTACCTCCATGGC
TCGACCTGTCATTGCTAAGGTAACGCTTCAAGAGGTTTTATATGAGTACG
AAGGAACCCAAATATCTTTTGAATTTCCTTATGATCTCTAATACCAACTT
CTAAATGATTAGGCCATGGTAGATGTAGCAGCAGAAGTTGGAGCTGACGC
TGTTGCACATGGGTGTACTGGCAAAGGAAATGACCAGGCAATTATTACTT
GGACTGTCTTGCTATATAGCTAAAGTGTCACATCGAAAAGACACACTTAT
CGGACTCTTACATTATCTTTTGACTTATTGATTGACCAGGTTCGGTTTGA
GCTGACCTTCTTTTCGCTAAACCCTGAACTTAAAGTTGTGGCACCATGGA
GAGAATGGGAGATCCAAGGCAGAGAAGACGCTATTGAGTATGCCAAGAAG
CATAACGTTCCTGTCCCCGTGACAAAGAAATCCATTTACAGCCGTGACAG
GAACCTCTGGCACCTTAGTCACGAGGTAAAACAAAAGTCCAACTGTTGAT
ACTATGTCGTATCTTTTTCTGTATGAATCCTTTTTGAAACCAAACATCTT
TTTGTTTTGAAAGGGTGATATATTGGAAGATCCAGCAAACGAGCCTAAGA
AAGATATGTACATGATGAGTGTAGATCCCGAAGATGCTCCTGATCAGCCT
GAGTAAGTTGTTTTTTCTCTAAAACCTTTGTGTGAGTCTAGTTCAAGAGC
TTTGTAATAGATTGGAGTTTGTTAATTTTACTTTTAACAGATACATCGAG
ATCGGGATAGAATCTGGACTTCCAGTGTCCTTCAACGGGAAGGCTCTCTC
TCCAGCCACCCTTCTCTCTGAGCTAAACGCAATAGGAGGAAAACACGGCA
TTGGCCGTATCGACATGGTGGAGAACCGTCTTGTCGGGATGAAGTCACGC
GGTGTCTACGAAACCCCAGGAGGCACCATCCTCTTTGCAGCCGTGCAGGA
GCTAGAGTCCCTCACTCTAGACAGAGAGAGCATTCAGGTGAAAGACTCAT
TAGCTCTGAAGTACGCAGAGATGGTTTACGCAGGAAGGTGGTTTGATCCG
CTTAAGGAGTCCATGGACGCTTTCATGGAGAAGTTAACCGAGAAAACCAC
GGGATCCGTTACGCTGAAGCTGTACAAAGGGTCAGTGTCGGTGACAGGGC
GTAAGAGTCCGAACAGTCTGTACAGACAGGACATATCTTCGTTTGAAGGG
AGTGAGATCTACAACCAAGCGGATGCTGCTGGGTTTATTCGTCTTTATGG
ACTTCCTATGAGAGTTAGAGCGATGCTTGAGAAAGGCATCTAGAGAGAAT
TGTTTCACTCACCATCACGTCTAGTTGGAGTTGAGAGTCTATTTGAATGA
CATTAGATGATCTCTTGTTGTGTTCAAAGGTTTTATGCGTTTAGCTTCCG
GAATAATTGTGTTATTTTTCTATGAATTGAATAATGTGTTACTGTGAATG
ATGTAACTTACGGTTGCATTAACAACTTAATTAAAGTTTTTTAGCAC back to topCoding sequence (CDS) from alignment at westarv0_A01:4491139..4493785- >BnaA01T0065100WE ID=BnaA01T0065100WE|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=CDS|length=1482bp|location=Sequence derived from alignment at westarv0_A01:4491139..4493785- (Brassica napus Westar) ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCATCATCATCTGC TCTCGCGCTCCGCAGCTCACCCACTGCTAGCTTAAGATGTCAGAATGTAG CTTGTCCAAAAACCACTTCCTCCTTTCAAGAGCTATCTGTGAGACGAAGC CAGCTTGTTGGCAATGCTCTTGCTACTGGTAATTTTCCCGCAACCCGCGC CTGCAAGAATCAAGCTATTCGAGCTGTTCTCTCCAGTGATGGACAAGCTG CTGATCCAAAGGGTGCCGGGCTTCGTGGCAAACTGAAAAAGGTCGTTCTT GCTTACAGTGGAGGCTTAGACACCTCTGTCATCGTGCCATGGCTTAAGGA AAACTATGGCTGTGAAGTTGTGTGTTTCACCGCAGATGTTGGTCAGGGCA TAAAAGAGTTGGATGGTTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTCT CAGTTGGTCGTTAAGGATCTCACCGAGGAGTTTGTAAAAGATTACATATT CCCTTGTCTAAGAGCTGGTGCCATCTACGAACGAAAATACCTGCTTGGTA CCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTAGATGTAGCAGCA GAAGTTGGAGCTGACGCTGTTGCACATGGGTGTACTGGCAAAGGAAATGA CCAGGTTCGGTTTGAGCTGACCTTCTTTTCGCTAAACCCTGAACTTAAAG TTGTGGCACCATGGAGAGAATGGGAGATCCAAGGCAGAGAAGACGCTATT GAGTATGCCAAGAAGCATAACGTTCCTGTCCCCGTGACAAAGAAATCCAT TTACAGCCGTGACAGGAACCTCTGGCACCTTAGTCACGAGGGTGATATAT TGGAAGATCCAGCAAACGAGCCTAAGAAAGATATGTACATGATGAGTGTA GATCCCGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGA ATCTGGACTTCCAGTGTCCTTCAACGGGAAGGCTCTCTCTCCAGCCACCC TTCTCTCTGAGCTAAACGCAATAGGAGGAAAACACGGCATTGGCCGTATC GACATGGTGGAGAACCGTCTTGTCGGGATGAAGTCACGCGGTGTCTACGA AACCCCAGGAGGCACCATCCTCTTTGCAGCCGTGCAGGAGCTAGAGTCCC TCACTCTAGACAGAGAGAGCATTCAGGTGAAAGACTCATTAGCTCTGAAG TACGCAGAGATGGTTTACGCAGGAAGGTGGTTTGATCCGCTTAAGGAGTC CATGGACGCTTTCATGGAGAAGTTAACCGAGAAAACCACGGGATCCGTTA CGCTGAAGCTGTACAAAGGGTCAGTGTCGGTGACAGGGCGTAAGAGTCCG AACAGTCTGTACAGACAGGACATATCTTCGTTTGAAGGGAGTGAGATCTA CAACCAAGCGGATGCTGCTGGGTTTATTCGTCTTTATGGACTTCCTATGA GAGTTAGAGCGATGCTTGAGAAAGGCATCTAG back to top
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