BnaA01T0065100WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0065100WE
Unique NameBnaA01T0065100WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:4491139..4493785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0065100WEBnaA01G0065100WEBrassica napus Westargenewestarv0_A01 4491139..4493785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0065100WEBnaA01T0065100WE-PBrassica napus Westarpolypeptidewestarv0_A01 4491343..4493785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0065100WE.exon10BnaA01T0065100WE.exon10Brassica napus Westarexonwestarv0_A01 4491139..4491895 -
BnaA01T0065100WE.exon9BnaA01T0065100WE.exon9Brassica napus Westarexonwestarv0_A01 4491984..4492072 -
BnaA01T0065100WE.exon8BnaA01T0065100WE.exon8Brassica napus Westarexonwestarv0_A01 4492161..4492346 -
BnaA01T0065100WE.exon7BnaA01T0065100WE.exon7Brassica napus Westarexonwestarv0_A01 4492449..4492523 -
BnaA01T0065100WE.exon6BnaA01T0065100WE.exon6Brassica napus Westarexonwestarv0_A01 4492617..4492799 -
BnaA01T0065100WE.exon5BnaA01T0065100WE.exon5Brassica napus Westarexonwestarv0_A01 4492916..4492964 -
BnaA01T0065100WE.exon4BnaA01T0065100WE.exon4Brassica napus Westarexonwestarv0_A01 4493102..4493234 -
BnaA01T0065100WE.exon3BnaA01T0065100WE.exon3Brassica napus Westarexonwestarv0_A01 4493335..4493416 -
BnaA01T0065100WE.exon2BnaA01T0065100WE.exon2Brassica napus Westarexonwestarv0_A01 4493504..4493559 -
BnaA01T0065100WE.exon1BnaA01T0065100WE.exon1Brassica napus Westarexonwestarv0_A01 4493710..4493785 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0065100WE.utr3p1BnaA01T0065100WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 4491139..4491342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0065100WEcds.BnaA01T0065100WEBrassica napus WestarCDSwestarv0_A01 4493710..4493785 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0065100WE ID=BnaA01T0065100WE|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=mRNA|length=1686bp|location=Sequence derived from alignment at westarv0_A01:4491139..4493785- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCATCATCATCTGC
TCTCGCGCTCCGCAGCTCACCCACTGCTAGCTTAAGATGTCAGAATGTAG
CTTGTCCAAAAACCACTTCCTCCTTTCAAGAGCTATCTGTGAGACGAAGC
CAGCTTGTTGGCAATGCTCTTGCTACTGGTAATTTTCCCGCAACCCGCGC
CTGCAAGAATCAAGCTATTCGAGCTGTTCTCTCCAGTGATGGACAAGCTG
CTGATCCAAAGGGTGCCGGGCTTCGTGGCAAACTGAAAAAGGTCGTTCTT
GCTTACAGTGGAGGCTTAGACACCTCTGTCATCGTGCCATGGCTTAAGGA
AAACTATGGCTGTGAAGTTGTGTGTTTCACCGCAGATGTTGGTCAGGGCA
TAAAAGAGTTGGATGGTTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTCT
CAGTTGGTCGTTAAGGATCTCACCGAGGAGTTTGTAAAAGATTACATATT
CCCTTGTCTAAGAGCTGGTGCCATCTACGAACGAAAATACCTGCTTGGTA
CCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTAGATGTAGCAGCA
GAAGTTGGAGCTGACGCTGTTGCACATGGGTGTACTGGCAAAGGAAATGA
CCAGGTTCGGTTTGAGCTGACCTTCTTTTCGCTAAACCCTGAACTTAAAG
TTGTGGCACCATGGAGAGAATGGGAGATCCAAGGCAGAGAAGACGCTATT
GAGTATGCCAAGAAGCATAACGTTCCTGTCCCCGTGACAAAGAAATCCAT
TTACAGCCGTGACAGGAACCTCTGGCACCTTAGTCACGAGGGTGATATAT
TGGAAGATCCAGCAAACGAGCCTAAGAAAGATATGTACATGATGAGTGTA
GATCCCGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGA
ATCTGGACTTCCAGTGTCCTTCAACGGGAAGGCTCTCTCTCCAGCCACCC
TTCTCTCTGAGCTAAACGCAATAGGAGGAAAACACGGCATTGGCCGTATC
GACATGGTGGAGAACCGTCTTGTCGGGATGAAGTCACGCGGTGTCTACGA
AACCCCAGGAGGCACCATCCTCTTTGCAGCCGTGCAGGAGCTAGAGTCCC
TCACTCTAGACAGAGAGAGCATTCAGGTGAAAGACTCATTAGCTCTGAAG
TACGCAGAGATGGTTTACGCAGGAAGGTGGTTTGATCCGCTTAAGGAGTC
CATGGACGCTTTCATGGAGAAGTTAACCGAGAAAACCACGGGATCCGTTA
CGCTGAAGCTGTACAAAGGGTCAGTGTCGGTGACAGGGCGTAAGAGTCCG
AACAGTCTGTACAGACAGGACATATCTTCGTTTGAAGGGAGTGAGATCTA
CAACCAAGCGGATGCTGCTGGGTTTATTCGTCTTTATGGACTTCCTATGA
GAGTTAGAGCGATGCTTGAGAAAGGCATCTAGAGAGAATTGTTTCACTCA
CCATCACGTCTAGTTGGAGTTGAGAGTCTATTTGAATGACATTAGATGAT
CTCTTGTTGTGTTCAAAGGTTTTATGCGTTTAGCTTCCGGAATAATTGTG
TTATTTTTCTATGAATTGAATAATGTGTTACTGTGAATGATGTAACTTAC
GGTTGCATTAACAACTTAATTAAAGTTTTTTAGCAC
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protein sequence of BnaA01T0065100WE

>BnaA01T0065100WE-P ID=BnaA01T0065100WE-P|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=polypeptide|length=494bp
MAEISATSFPSSSSSSALALRSSPTASLRCQNVACPKTTSSFQELSVRRS
QLVGNALATGNFPATRACKNQAIRAVLSSDGQAADPKGAGLRGKLKKVVL
AYSGGLDTSVIVPWLKENYGCEVVCFTADVGQGIKELDGLEQKAKASGAS
QLVVKDLTEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAA
EVGADAVAHGCTGKGNDQVRFELTFFSLNPELKVVAPWREWEIQGREDAI
EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYMMSV
DPEDAPDQPEYIEIGIESGLPVSFNGKALSPATLLSELNAIGGKHGIGRI
DMVENRLVGMKSRGVYETPGGTILFAAVQELESLTLDRESIQVKDSLALK
YAEMVYAGRWFDPLKESMDAFMEKLTEKTTGSVTLKLYKGSVSVTGRKSP
NSLYRQDISSFEGSEIYNQADAAGFIRLYGLPMRVRAMLEKGI.
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mRNA from alignment at westarv0_A01:4491139..4493785-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0065100WE ID=BnaA01T0065100WE|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=mRNA|length=2647bp|location=Sequence derived from alignment at westarv0_A01:4491139..4493785- (Brassica napus Westar)
ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCATCATCATCTGC
TCTCGCGCTCCGCAGCTCACCCACTGGTTATCTCTCTCTCCTCCATTTCC
TTTATCGCGCTTTCCTCATCTTCTAGTTCAAAATTTGCAAATGGTTCTCT
CAGTTTTTGATCTCTGTTATTTTCCAAAAGTCTAATCGGAATGTAATTGA
TATGTGTATCTAATATATTCCCGCAGCTAGCTTAAGATGTCAGAATGTAG
CTTGTCCAAAAACCACTTCCTCCTTTCAAGAGGTATATATTCCAAATTGA
AATTGATTCTTATTCATGCGCCGATCTCGTATCTAAAATCCTACACGACC
TTGCTTGTCTGAAATGCAGCTATCTGTGAGACGAAGCCAGCTTGTTGGCA
ATGCTCTTGCTACTGGTAATTTTCCCGCAACCCGCGCCTGCAAGAATCAA
GGTGAAGTCACAGTCTTTATTTCTTCAAAGTCACAGTCTTTGTTTCCTCC
CATGAATCATCGTTCATGCTAAAACACTTTGGGGTCTTGAATACTGCGCA
GCTATTCGAGCTGTTCTCTCCAGTGATGGACAAGCTGCTGATCCAAAGGG
TGCCGGGCTTCGTGGCAAACTGAAAAAGGTCGTTCTTGCTTACAGTGGAG
GCTTAGACACCTCTGTCATCGTGCCATGGCTTAAGTACGTTATTTCCCTT
TTCTCTAGCAAGAATAACTTCATCCTCTGGTTTAGAAACAATCAGTTTAG
ATAGCTTGTTGTTTCATGAACGTTTCTTCTGTTCACTACTCTTACATTAT
ATTATTTGTTGTGTTCCGCAGGGAAAACTATGGCTGTGAAGTTGTGTGTT
TCACCGCAGATGTTGGTCAGGTACATACACTACTACTTAAAACCCAATTG
CTTACTAATTTTAGTTGAGAAATGAAGTTTTGTGTAGCATTTTCGAGTCA
TGTATTCTCAATCTCTAAATGCTTTGATCTATGAAGGGCATAAAAGAGTT
GGATGGTTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTCTCAGTTGGTCG
TTAAGGATCTCACCGAGGAGTTTGTAAAAGATTACATATTCCCTTGTCTA
AGAGCTGGTGCCATCTACGAACGAAAATACCTGCTTGGTACCTCCATGGC
TCGACCTGTCATTGCTAAGGTAACGCTTCAAGAGGTTTTATATGAGTACG
AAGGAACCCAAATATCTTTTGAATTTCCTTATGATCTCTAATACCAACTT
CTAAATGATTAGGCCATGGTAGATGTAGCAGCAGAAGTTGGAGCTGACGC
TGTTGCACATGGGTGTACTGGCAAAGGAAATGACCAGGCAATTATTACTT
GGACTGTCTTGCTATATAGCTAAAGTGTCACATCGAAAAGACACACTTAT
CGGACTCTTACATTATCTTTTGACTTATTGATTGACCAGGTTCGGTTTGA
GCTGACCTTCTTTTCGCTAAACCCTGAACTTAAAGTTGTGGCACCATGGA
GAGAATGGGAGATCCAAGGCAGAGAAGACGCTATTGAGTATGCCAAGAAG
CATAACGTTCCTGTCCCCGTGACAAAGAAATCCATTTACAGCCGTGACAG
GAACCTCTGGCACCTTAGTCACGAGGTAAAACAAAAGTCCAACTGTTGAT
ACTATGTCGTATCTTTTTCTGTATGAATCCTTTTTGAAACCAAACATCTT
TTTGTTTTGAAAGGGTGATATATTGGAAGATCCAGCAAACGAGCCTAAGA
AAGATATGTACATGATGAGTGTAGATCCCGAAGATGCTCCTGATCAGCCT
GAGTAAGTTGTTTTTTCTCTAAAACCTTTGTGTGAGTCTAGTTCAAGAGC
TTTGTAATAGATTGGAGTTTGTTAATTTTACTTTTAACAGATACATCGAG
ATCGGGATAGAATCTGGACTTCCAGTGTCCTTCAACGGGAAGGCTCTCTC
TCCAGCCACCCTTCTCTCTGAGCTAAACGCAATAGGAGGAAAACACGGCA
TTGGCCGTATCGACATGGTGGAGAACCGTCTTGTCGGGATGAAGTCACGC
GGTGTCTACGAAACCCCAGGAGGCACCATCCTCTTTGCAGCCGTGCAGGA
GCTAGAGTCCCTCACTCTAGACAGAGAGAGCATTCAGGTGAAAGACTCAT
TAGCTCTGAAGTACGCAGAGATGGTTTACGCAGGAAGGTGGTTTGATCCG
CTTAAGGAGTCCATGGACGCTTTCATGGAGAAGTTAACCGAGAAAACCAC
GGGATCCGTTACGCTGAAGCTGTACAAAGGGTCAGTGTCGGTGACAGGGC
GTAAGAGTCCGAACAGTCTGTACAGACAGGACATATCTTCGTTTGAAGGG
AGTGAGATCTACAACCAAGCGGATGCTGCTGGGTTTATTCGTCTTTATGG
ACTTCCTATGAGAGTTAGAGCGATGCTTGAGAAAGGCATCTAGAGAGAAT
TGTTTCACTCACCATCACGTCTAGTTGGAGTTGAGAGTCTATTTGAATGA
CATTAGATGATCTCTTGTTGTGTTCAAAGGTTTTATGCGTTTAGCTTCCG
GAATAATTGTGTTATTTTTCTATGAATTGAATAATGTGTTACTGTGAATG
ATGTAACTTACGGTTGCATTAACAACTTAATTAAAGTTTTTTAGCAC
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Coding sequence (CDS) from alignment at westarv0_A01:4491139..4493785-

>BnaA01T0065100WE ID=BnaA01T0065100WE|Name=BnaA01T0065100WE|organism=Brassica napus Westar|type=CDS|length=1482bp|location=Sequence derived from alignment at westarv0_A01:4491139..4493785- (Brassica napus Westar)
ATGGCTGAAATCTCGGCGACTTCGTTTCCTTCTTCTTCATCATCATCTGC
TCTCGCGCTCCGCAGCTCACCCACTGCTAGCTTAAGATGTCAGAATGTAG
CTTGTCCAAAAACCACTTCCTCCTTTCAAGAGCTATCTGTGAGACGAAGC
CAGCTTGTTGGCAATGCTCTTGCTACTGGTAATTTTCCCGCAACCCGCGC
CTGCAAGAATCAAGCTATTCGAGCTGTTCTCTCCAGTGATGGACAAGCTG
CTGATCCAAAGGGTGCCGGGCTTCGTGGCAAACTGAAAAAGGTCGTTCTT
GCTTACAGTGGAGGCTTAGACACCTCTGTCATCGTGCCATGGCTTAAGGA
AAACTATGGCTGTGAAGTTGTGTGTTTCACCGCAGATGTTGGTCAGGGCA
TAAAAGAGTTGGATGGTTTGGAACAAAAGGCTAAGGCTAGTGGTGCTTCT
CAGTTGGTCGTTAAGGATCTCACCGAGGAGTTTGTAAAAGATTACATATT
CCCTTGTCTAAGAGCTGGTGCCATCTACGAACGAAAATACCTGCTTGGTA
CCTCCATGGCTCGACCTGTCATTGCTAAGGCCATGGTAGATGTAGCAGCA
GAAGTTGGAGCTGACGCTGTTGCACATGGGTGTACTGGCAAAGGAAATGA
CCAGGTTCGGTTTGAGCTGACCTTCTTTTCGCTAAACCCTGAACTTAAAG
TTGTGGCACCATGGAGAGAATGGGAGATCCAAGGCAGAGAAGACGCTATT
GAGTATGCCAAGAAGCATAACGTTCCTGTCCCCGTGACAAAGAAATCCAT
TTACAGCCGTGACAGGAACCTCTGGCACCTTAGTCACGAGGGTGATATAT
TGGAAGATCCAGCAAACGAGCCTAAGAAAGATATGTACATGATGAGTGTA
GATCCCGAAGATGCTCCTGATCAGCCTGAATACATCGAGATCGGGATAGA
ATCTGGACTTCCAGTGTCCTTCAACGGGAAGGCTCTCTCTCCAGCCACCC
TTCTCTCTGAGCTAAACGCAATAGGAGGAAAACACGGCATTGGCCGTATC
GACATGGTGGAGAACCGTCTTGTCGGGATGAAGTCACGCGGTGTCTACGA
AACCCCAGGAGGCACCATCCTCTTTGCAGCCGTGCAGGAGCTAGAGTCCC
TCACTCTAGACAGAGAGAGCATTCAGGTGAAAGACTCATTAGCTCTGAAG
TACGCAGAGATGGTTTACGCAGGAAGGTGGTTTGATCCGCTTAAGGAGTC
CATGGACGCTTTCATGGAGAAGTTAACCGAGAAAACCACGGGATCCGTTA
CGCTGAAGCTGTACAAAGGGTCAGTGTCGGTGACAGGGCGTAAGAGTCCG
AACAGTCTGTACAGACAGGACATATCTTCGTTTGAAGGGAGTGAGATCTA
CAACCAAGCGGATGCTGCTGGGTTTATTCGTCTTTATGGACTTCCTATGA
GAGTTAGAGCGATGCTTGAGAAAGGCATCTAG
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