BnaA01T0063900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0063900WE
Unique NameBnaA01T0063900WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:4416648..4419567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0063900WEBnaA01G0063900WEBrassica napus Westargenewestarv0_A01 4416648..4419567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0063900WEBnaA01T0063900WE-PBrassica napus Westarpolypeptidewestarv0_A01 4416648..4419567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0063900WE.exon5BnaA01T0063900WE.exon5Brassica napus Westarexonwestarv0_A01 4416648..4416844 -
BnaA01T0063900WE.exon4BnaA01T0063900WE.exon4Brassica napus Westarexonwestarv0_A01 4417055..4417347 -
BnaA01T0063900WE.exon3BnaA01T0063900WE.exon3Brassica napus Westarexonwestarv0_A01 4417430..4417710 -
BnaA01T0063900WE.exon2BnaA01T0063900WE.exon2Brassica napus Westarexonwestarv0_A01 4417792..4418098 -
BnaA01T0063900WE.exon1BnaA01T0063900WE.exon1Brassica napus Westarexonwestarv0_A01 4419281..4419567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0063900WEcds.BnaA01T0063900WEBrassica napus WestarCDSwestarv0_A01 4419281..4419567 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=mRNA|length=1365bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTTGGCGATCCAATG
GTGTATGAGAGATACTGGCAAGAAATGGGTCATATGACAACAATGGTGAT
AGCTGGATGGCAATCTCTCAGCTATTTTTCAGATAATAACAATGAGCTTT
GTTGGTTTCTTGAACCAGAACTTGCCAAAGAGATTGTAAGAGTGCATAAG
GTTGTTGGTAACGCTGTAACACAAGACCGTTATATTGTTGTTGGCACTGG
CTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATG
ACTCTGGTCCCATTAATGTCGTCTCAGCTGCGCCTTATTATTGCTCATAC
CCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATAGATGGGGAGGAGA
TGCAAAGACATACAAGGAAGAAGGTCCATACATTGAACTTGTTACATCAC
CAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGTGAACCGTAGTGAA
GGTATACTGATCCATGATTTAGCGTACTACTGGCCGCAGTATACGCCTAT
AACATCGATAGCTGATCACGATGTAATGCTCTTCACTGCTTCAAAGAGCA
CTGGCCATGCAGGGATGCGCATTGGATGGGCTTTGGTAAAAGACAAAGAG
ACGGCCAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTC
AAAGGTTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACA
GTTGTGGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCC
ATGTTTGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGG
TTTTACCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAG
TCTTTGAGCCACAACCAGCTTTTGCATGGTTAAAGTGTGAAGAAGGGATT
GTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACCAAAAG
TGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCATGTTAG
ATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTTCCTTC
AATTCAACTTTGTAA
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protein sequence of BnaA01T0063900WE

>BnaA01T0063900WE-P ID=BnaA01T0063900WE-P|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=polypeptide|length=455bp
MGKVPRILSWRNMLVLSLAVNFSLILRILKGTDGGNSSYVVSIWPVVSNS
LDRTVYGDSKWPVVSTTASGSSSLSSASCNYNETQEDDERIINLKLGDPM
VYERYWQEMGHMTTMVIAGWQSLSYFSDNNNELCWFLEPELAKEIVRVHK
VVGNAVTQDRYIVVGTGSTQLYQAALYALSPHDDSGPINVVSAAPYYCSY
PLITDCLKSGLYRWGGDAKTYKEEGPYIELVTSPNNPDGILRESVVNRSE
GILIHDLAYYWPQYTPITSIADHDVMLFTASKSTGHAGMRIGWALVKDKE
TAKKMTEYIELNTIGVSKVSQLRVAKVLKAVSDSCGNETAKSFFEHSYDA
MFERWKLLKQASKTSKGFTVPDFASQRCNFLGKVFEPQPAFAWLKCEEGI
VDCEKFLREKKNILTKSGKYFGDDLSYVRVSMLDRDSIFNIFLHRISSSF
NSTL.
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mRNA from alignment at westarv0_A01:4416648..4419567-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=mRNA|length=2920bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTGTAAGTTTCTACT GCTTTTATTTCTTGATTTCTCATAATTATATCATAATAGGTAATATAGAA TATACCCTCGTCTAGTCTAGTCTCTTGTGTAATATGTTCCTCTATGCATT CATAGTACTGAGACTTCCAATAGTATCTCTTTCGACACTCTTCTTAAGTG TTCTTGATTGCAAATTTTAAAAAGAAACAGTTCTTATCTTCTGGCAGAAC TGTAATCGCTTGTTTATTCTTTCTTGGTATTGTCAGGTTAATAAATGTGT ATTAATGGCGTATCATATAGAATCTACAGACAAATTTAATTTCTCCCTTA TCCCACACTTGATTGCTTTGAAAGTCACTAGCTATTATAGCAACGAATCT GGGATTATCCTCTTAAGCACCATTCAATTTAAAATTCAAACTTCAAAAGA GAGCAACGTTACTACTCTAAAAATTGTGATGATCATCTTCATTGACTTGC CTATTTTTCTAACCAGACTCTATATTTTGCAAGTTACCGTGGAATATGTC CTAGTTCTGTGTATGGTTCTCTGTTCCTTAACGTACGCCGCTAGTTTGAA TATTTGGTTCTGTTATTTACTTTCTTATGACTCGTCAAATCAATCCTGAA AAGTATGCAAAAAATAAAATAAAATTGCATGTTGATTGATCTTGGTGGTC CATATGGGAATTTGTATGTATTGGTCATAAATGTAAAATGGGTCATTCTT GTTTGATAATGGACGTAAAGAAGAGAGTGATTTTTATTTATTTATATGGG TTTGGTATGTGGAATGTTGTGAGAGGGAGGAAGATAGTGAGTGATGTTCC TTTTTGGATGCTCGCTATTAATTTAGTTAGTGATGCCCAATAAGTTGAAA CAATGGAAATTAATTAAAATGACTGAGAGAAACTCTTTTGAATTCTAGGC AAAAGTGAAAAAAAAAAGTAAAGAGGGCCCTCATTTTGGTGGAAATAATT ATGCATACATACATAAAAAATATATGTCTTTTAAGAGAATCTAAAGGACT ACTTTAGTGATCTGCTTGACCATGTTCTTTGCTGTTTCAGAAACAGGAAC GTGTTGTTTTATGCTCTCCATTAACAAAAAAAGGACCCACCAATTCTTTT TGACTCAAACATTTTGTCGCATTATAAAACTAGTTAATGTACTTTGATCC ATGCGGTGGTTATATGCAGTGGCGATCCAATGGTGTATGAGAGATACTGG CAAGAAATGGGTCATATGACAACAATGGTGATAGCTGGATGGCAATCTCT CAGCTATTTTTCAGATAATAACAATGAGCTTTGTTGGTTTCTTGAACCAG AACTTGCCAAAGAGATTGTAAGAGTGCATAAGGTTGTTGGTAACGCTGTA ACACAAGACCGTTATATTGTTGTTGGCACTGGCTCAACACAATTGTATCA GGCTGCTCTCTATGCTCTCTCCCCACATGATGACTCTGGTCCCATTAATG TCGTCTCAGCTGCGCCTTATTATTGCGTGAGTTATATTCAGAGCTGTCTT TCTTGATTTCCTTGGGCATATAAATCACTATAACGTGTGTAACTGGTTTG GTTGCAGTCATACCCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATA GATGGGGAGGAGATGCAAAGACATACAAGGAAGAAGGTCCATACATTGAA CTTGTTACATCACCAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGT GAACCGTAGTGAAGGTATACTGATCCATGATTTAGCGTACTACTGGCCGC AGTATACGCCTATAACATCGATAGCTGATCACGATGTAATGCTCTTCACT GCTTCAAAGAGCACTGGCCATGCAGGGATGCGCATTGGGTACATTCTTGT TACTATTTTCTTATTTTGTGGGAACAAAACAAAAAATGGGAAGTGTATCT TGAACCTTACATTTTCCCAGATGGGCTTTGGTAAAAGACAAAGAGACGGC CAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTCAAAGG TTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACAGTTGT GGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCCATGTT TGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGGTTTTA CCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAGTCTTT GAGCCACAACCAGGTACTTTAAAAGAAAAACAAAGTAAATGATTAATATC AAACTAGTTTATATATATATATATATATATATATCCTACGGGTTGAATCG GTCGGTTTCGGTAAAAATGCACTTAGTGTTACACTGTGGAATTTTCCCTA AAGGCCACCATACTACCTGACCTTTGTATCAAACTATTTTTTAACTGATA CTGTTTGACGTATTTTTGTGCAGCTTTTGCATGGTTAAAGTGTGAAGAAG GGATTGTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACC AAAAGTGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCAT GTTAGATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTT CCTTCAATTCAACTTTGTAA
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Coding sequence (CDS) from alignment at westarv0_A01:4416648..4419567-

>BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=CDS|length=1365bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTTGGCGATCCAATG
GTGTATGAGAGATACTGGCAAGAAATGGGTCATATGACAACAATGGTGAT
AGCTGGATGGCAATCTCTCAGCTATTTTTCAGATAATAACAATGAGCTTT
GTTGGTTTCTTGAACCAGAACTTGCCAAAGAGATTGTAAGAGTGCATAAG
GTTGTTGGTAACGCTGTAACACAAGACCGTTATATTGTTGTTGGCACTGG
CTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATG
ACTCTGGTCCCATTAATGTCGTCTCAGCTGCGCCTTATTATTGCTCATAC
CCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATAGATGGGGAGGAGA
TGCAAAGACATACAAGGAAGAAGGTCCATACATTGAACTTGTTACATCAC
CAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGTGAACCGTAGTGAA
GGTATACTGATCCATGATTTAGCGTACTACTGGCCGCAGTATACGCCTAT
AACATCGATAGCTGATCACGATGTAATGCTCTTCACTGCTTCAAAGAGCA
CTGGCCATGCAGGGATGCGCATTGGATGGGCTTTGGTAAAAGACAAAGAG
ACGGCCAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTC
AAAGGTTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACA
GTTGTGGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCC
ATGTTTGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGG
TTTTACCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAG
TCTTTGAGCCACAACCAGCTTTTGCATGGTTAAAGTGTGAAGAAGGGATT
GTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACCAAAAG
TGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCATGTTAG
ATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTTCCTTC
AATTCAACTTTGTAA
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