BnaA01T0063900WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0063900WE
Unique Name	BnaA01T0063900WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:4416648..4419567 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0063900WE	BnaA01G0063900WE	Brassica napus Westar	gene	westarv0_A01 4416648..4419567 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0063900WE	BnaA01T0063900WE-P	Brassica napus Westar	polypeptide	westarv0_A01 4416648..4419567 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0063900WE.exon5	BnaA01T0063900WE.exon5	Brassica napus Westar	exon	westarv0_A01 4416648..4416844 -
BnaA01T0063900WE.exon4	BnaA01T0063900WE.exon4	Brassica napus Westar	exon	westarv0_A01 4417055..4417347 -
BnaA01T0063900WE.exon3	BnaA01T0063900WE.exon3	Brassica napus Westar	exon	westarv0_A01 4417430..4417710 -
BnaA01T0063900WE.exon2	BnaA01T0063900WE.exon2	Brassica napus Westar	exon	westarv0_A01 4417792..4418098 -
BnaA01T0063900WE.exon1	BnaA01T0063900WE.exon1	Brassica napus Westar	exon	westarv0_A01 4419281..4419567 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0063900WE	cds.BnaA01T0063900WE	Brassica napus Westar	CDS	westarv0_A01 4419281..4419567 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:4416648..4419567-
coding sequence from alignment at westarv0_A01:4416648..4419567-

spliced messenger RNA

>BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=mRNA|length=1365bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTTGGCGATCCAATG
GTGTATGAGAGATACTGGCAAGAAATGGGTCATATGACAACAATGGTGAT
AGCTGGATGGCAATCTCTCAGCTATTTTTCAGATAATAACAATGAGCTTT
GTTGGTTTCTTGAACCAGAACTTGCCAAAGAGATTGTAAGAGTGCATAAG
GTTGTTGGTAACGCTGTAACACAAGACCGTTATATTGTTGTTGGCACTGG
CTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATG
ACTCTGGTCCCATTAATGTCGTCTCAGCTGCGCCTTATTATTGCTCATAC
CCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATAGATGGGGAGGAGA
TGCAAAGACATACAAGGAAGAAGGTCCATACATTGAACTTGTTACATCAC
CAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGTGAACCGTAGTGAA
GGTATACTGATCCATGATTTAGCGTACTACTGGCCGCAGTATACGCCTAT
AACATCGATAGCTGATCACGATGTAATGCTCTTCACTGCTTCAAAGAGCA
CTGGCCATGCAGGGATGCGCATTGGATGGGCTTTGGTAAAAGACAAAGAG
ACGGCCAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTC
AAAGGTTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACA
GTTGTGGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCC
ATGTTTGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGG
TTTTACCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAG
TCTTTGAGCCACAACCAGCTTTTGCATGGTTAAAGTGTGAAGAAGGGATT
GTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACCAAAAG
TGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCATGTTAG
ATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTTCCTTC
AATTCAACTTTGTAA

protein sequence of BnaA01T0063900WE

>BnaA01T0063900WE-P ID=BnaA01T0063900WE-P|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=polypeptide|length=455bp
MGKVPRILSWRNMLVLSLAVNFSLILRILKGTDGGNSSYVVSIWPVVSNS
LDRTVYGDSKWPVVSTTASGSSSLSSASCNYNETQEDDERIINLKLGDPM
VYERYWQEMGHMTTMVIAGWQSLSYFSDNNNELCWFLEPELAKEIVRVHK
VVGNAVTQDRYIVVGTGSTQLYQAALYALSPHDDSGPINVVSAAPYYCSY
PLITDCLKSGLYRWGGDAKTYKEEGPYIELVTSPNNPDGILRESVVNRSE
GILIHDLAYYWPQYTPITSIADHDVMLFTASKSTGHAGMRIGWALVKDKE
TAKKMTEYIELNTIGVSKVSQLRVAKVLKAVSDSCGNETAKSFFEHSYDA
MFERWKLLKQASKTSKGFTVPDFASQRCNFLGKVFEPQPAFAWLKCEEGI
VDCEKFLREKKNILTKSGKYFGDDLSYVRVSMLDRDSIFNIFLHRISSSF
NSTL.

mRNA from alignment at westarv0_A01:4416648..4419567-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=mRNA|length=2920bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTGTAAGTTTCTACT
GCTTTTATTTCTTGATTTCTCATAATTATATCATAATAGGTAATATAGAA
TATACCCTCGTCTAGTCTAGTCTCTTGTGTAATATGTTCCTCTATGCATT
CATAGTACTGAGACTTCCAATAGTATCTCTTTCGACACTCTTCTTAAGTG
TTCTTGATTGCAAATTTTAAAAAGAAACAGTTCTTATCTTCTGGCAGAAC
TGTAATCGCTTGTTTATTCTTTCTTGGTATTGTCAGGTTAATAAATGTGT
ATTAATGGCGTATCATATAGAATCTACAGACAAATTTAATTTCTCCCTTA
TCCCACACTTGATTGCTTTGAAAGTCACTAGCTATTATAGCAACGAATCT
GGGATTATCCTCTTAAGCACCATTCAATTTAAAATTCAAACTTCAAAAGA
GAGCAACGTTACTACTCTAAAAATTGTGATGATCATCTTCATTGACTTGC
CTATTTTTCTAACCAGACTCTATATTTTGCAAGTTACCGTGGAATATGTC
CTAGTTCTGTGTATGGTTCTCTGTTCCTTAACGTACGCCGCTAGTTTGAA
TATTTGGTTCTGTTATTTACTTTCTTATGACTCGTCAAATCAATCCTGAA
AAGTATGCAAAAAATAAAATAAAATTGCATGTTGATTGATCTTGGTGGTC
CATATGGGAATTTGTATGTATTGGTCATAAATGTAAAATGGGTCATTCTT
GTTTGATAATGGACGTAAAGAAGAGAGTGATTTTTATTTATTTATATGGG
TTTGGTATGTGGAATGTTGTGAGAGGGAGGAAGATAGTGAGTGATGTTCC
TTTTTGGATGCTCGCTATTAATTTAGTTAGTGATGCCCAATAAGTTGAAA
CAATGGAAATTAATTAAAATGACTGAGAGAAACTCTTTTGAATTCTAGGC
AAAAGTGAAAAAAAAAAGTAAAGAGGGCCCTCATTTTGGTGGAAATAATT
ATGCATACATACATAAAAAATATATGTCTTTTAAGAGAATCTAAAGGACT
ACTTTAGTGATCTGCTTGACCATGTTCTTTGCTGTTTCAGAAACAGGAAC
GTGTTGTTTTATGCTCTCCATTAACAAAAAAAGGACCCACCAATTCTTTT
TGACTCAAACATTTTGTCGCATTATAAAACTAGTTAATGTACTTTGATCC
ATGCGGTGGTTATATGCAGTGGCGATCCAATGGTGTATGAGAGATACTGG
CAAGAAATGGGTCATATGACAACAATGGTGATAGCTGGATGGCAATCTCT
CAGCTATTTTTCAGATAATAACAATGAGCTTTGTTGGTTTCTTGAACCAG
AACTTGCCAAAGAGATTGTAAGAGTGCATAAGGTTGTTGGTAACGCTGTA
ACACAAGACCGTTATATTGTTGTTGGCACTGGCTCAACACAATTGTATCA
GGCTGCTCTCTATGCTCTCTCCCCACATGATGACTCTGGTCCCATTAATG
TCGTCTCAGCTGCGCCTTATTATTGCGTGAGTTATATTCAGAGCTGTCTT
TCTTGATTTCCTTGGGCATATAAATCACTATAACGTGTGTAACTGGTTTG
GTTGCAGTCATACCCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATA
GATGGGGAGGAGATGCAAAGACATACAAGGAAGAAGGTCCATACATTGAA
CTTGTTACATCACCAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGT
GAACCGTAGTGAAGGTATACTGATCCATGATTTAGCGTACTACTGGCCGC
AGTATACGCCTATAACATCGATAGCTGATCACGATGTAATGCTCTTCACT
GCTTCAAAGAGCACTGGCCATGCAGGGATGCGCATTGGGTACATTCTTGT
TACTATTTTCTTATTTTGTGGGAACAAAACAAAAAATGGGAAGTGTATCT
TGAACCTTACATTTTCCCAGATGGGCTTTGGTAAAAGACAAAGAGACGGC
CAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTCAAAGG
TTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACAGTTGT
GGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCCATGTT
TGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGGTTTTA
CCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAGTCTTT
GAGCCACAACCAGGTACTTTAAAAGAAAAACAAAGTAAATGATTAATATC
AAACTAGTTTATATATATATATATATATATATATCCTACGGGTTGAATCG
GTCGGTTTCGGTAAAAATGCACTTAGTGTTACACTGTGGAATTTTCCCTA
AAGGCCACCATACTACCTGACCTTTGTATCAAACTATTTTTTAACTGATA
CTGTTTGACGTATTTTTGTGCAGCTTTTGCATGGTTAAAGTGTGAAGAAG
GGATTGTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACC
AAAAGTGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCAT
GTTAGATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTT
CCTTCAATTCAACTTTGTAA

Coding sequence (CDS) from alignment at westarv0_A01:4416648..4419567-

>BnaA01T0063900WE ID=BnaA01T0063900WE|Name=BnaA01T0063900WE|organism=Brassica napus Westar|type=CDS|length=1365bp|location=Sequence derived from alignment at westarv0_A01:4416648..4419567- (Brassica napus Westar)
ATGGGAAAGGTTCCGAGGATTCTGTCTTGGAGGAACATGTTGGTCCTCTC
ATTGGCTGTAAACTTCAGCTTGATACTAAGGATCTTGAAGGGTACTGACG
GTGGAAACTCCTCGTATGTTGTTAGTATATGGCCTGTGGTATCTAACTCA
CTGGATAGAACGGTGTATGGTGATAGCAAATGGCCTGTGGTATCCACAAC
TGCCTCAGGATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAACGAGA
CTCAAGAGGATGACGAAAGAATTATCAATCTCAAACTTGGCGATCCAATG
GTGTATGAGAGATACTGGCAAGAAATGGGTCATATGACAACAATGGTGAT
AGCTGGATGGCAATCTCTCAGCTATTTTTCAGATAATAACAATGAGCTTT
GTTGGTTTCTTGAACCAGAACTTGCCAAAGAGATTGTAAGAGTGCATAAG
GTTGTTGGTAACGCTGTAACACAAGACCGTTATATTGTTGTTGGCACTGG
CTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATG
ACTCTGGTCCCATTAATGTCGTCTCAGCTGCGCCTTATTATTGCTCATAC
CCGTTGATTACAGATTGTCTTAAATCGGGTTTGTATAGATGGGGAGGAGA
TGCAAAGACATACAAGGAAGAAGGTCCATACATTGAACTTGTTACATCAC
CAAACAACCCTGATGGGATCTTGAGAGAATCAGTGGTGAACCGTAGTGAA
GGTATACTGATCCATGATTTAGCGTACTACTGGCCGCAGTATACGCCTAT
AACATCGATAGCTGATCACGATGTAATGCTCTTCACTGCTTCAAAGAGCA
CTGGCCATGCAGGGATGCGCATTGGATGGGCTTTGGTAAAAGACAAAGAG
ACGGCCAAGAAAATGACAGAGTACATAGAACTCAACACGATTGGGGTTTC
AAAGGTTTCGCAGCTTCGAGTAGCCAAGGTTTTGAAGGCAGTGTCAGACA
GTTGTGGTAATGAAACGGCTAAATCCTTTTTTGAGCACAGTTATGATGCC
ATGTTTGAGAGGTGGAAGCTATTGAAACAAGCATCGAAGACTAGTAAAGG
TTTTACCGTTCCTGATTTTGCCTCTCAACGTTGCAATTTCCTAGGAAAAG
TCTTTGAGCCACAACCAGCTTTTGCATGGTTAAAGTGTGAAGAAGGGATT
GTGGATTGTGAAAAGTTTCTGAGAGAAAAGAAGAATATTCTAACCAAAAG
TGGAAAGTATTTTGGAGATGATCTGAGCTATGTGAGGGTAAGCATGTTAG
ATAGAGATTCTATCTTTAATATTTTTCTTCACAGGATTTCATCTTCCTTC
AATTCAACTTTGTAA

Orthology

View orthology data for BnaA01T0063900WE