BnaA01T0060300WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0060300WE
Unique NameBnaA01T0060300WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:4186063..4188588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0060300WEBnaA01G0060300WEBrassica napus Westargenewestarv0_A01 4186063..4188588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0060300WEBnaA01T0060300WE-PBrassica napus Westarpolypeptidewestarv0_A01 4186063..4188588 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0060300WE.exon13BnaA01T0060300WE.exon13Brassica napus Westarexonwestarv0_A01 4186063..4186248 -
BnaA01T0060300WE.exon12BnaA01T0060300WE.exon12Brassica napus Westarexonwestarv0_A01 4186341..4186401 -
BnaA01T0060300WE.exon11BnaA01T0060300WE.exon11Brassica napus Westarexonwestarv0_A01 4186475..4186542 -
BnaA01T0060300WE.exon10BnaA01T0060300WE.exon10Brassica napus Westarexonwestarv0_A01 4186626..4186832 -
BnaA01T0060300WE.exon9BnaA01T0060300WE.exon9Brassica napus Westarexonwestarv0_A01 4186913..4187003 -
BnaA01T0060300WE.exon8BnaA01T0060300WE.exon8Brassica napus Westarexonwestarv0_A01 4187097..4187185 -
BnaA01T0060300WE.exon7BnaA01T0060300WE.exon7Brassica napus Westarexonwestarv0_A01 4187273..4187347 -
BnaA01T0060300WE.exon6BnaA01T0060300WE.exon6Brassica napus Westarexonwestarv0_A01 4187448..4187584 -
BnaA01T0060300WE.exon5BnaA01T0060300WE.exon5Brassica napus Westarexonwestarv0_A01 4187665..4187719 -
BnaA01T0060300WE.exon4BnaA01T0060300WE.exon4Brassica napus Westarexonwestarv0_A01 4187831..4187947 -
BnaA01T0060300WE.exon3BnaA01T0060300WE.exon3Brassica napus Westarexonwestarv0_A01 4188035..4188249 -
BnaA01T0060300WE.exon2BnaA01T0060300WE.exon2Brassica napus Westarexonwestarv0_A01 4188335..4188392 -
BnaA01T0060300WE.exon1BnaA01T0060300WE.exon1Brassica napus Westarexonwestarv0_A01 4188472..4188588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0060300WEcds.BnaA01T0060300WEBrassica napus WestarCDSwestarv0_A01 4188472..4188588 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0060300WE ID=BnaA01T0060300WE|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=mRNA|length=1476bp|location=Sequence derived from alignment at westarv0_A01:4186063..4188588- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGAGGAGAATTCACTTGAATATACACCCACATGGGTCGTAGC
GTTTATCTGTTTCATCATCGTTCTCTTGTCCCTGCTCGCTGAACGTGGTC
TTCATCATCTTGGAAAGTATCTGAAGCGTAAAAAACAAGATGCCTTGTTT
GAGGCCTTGCAGAAACTTAAAGAAGAACTGATGCTTTTGGGATTCATCTC
GCTAATGTTAACGGTATCTCAGACAGCAATCAGGCATATATGTGTCCCAC
CAGCTCTTGTTAGCAACATGTTCCCTTGTAAGAAGCCATTAGAGGAGGAG
CATCATGCTCCTGAAACATCTCATTCGCTTGTCTTCAATACACGACATTT
GCTTTCAACAGGAGCAAGTCCAGACCATTGTACTAACAAGGGGAAGGTTC
CTTTAATATCCGTTGAAGCGTTACATCATCTCCATATCTTTATATTCGTG
CTAGCGGTTGTTCACGTCATCTTCTGTGCTTCAACGATGGTTCTTGGAGG
AGCTAGGATACAACAATGGAAGCGTTGGGAGGATAATTTCAAGAAGATTC
CTTCTCAAAAAGATGCATCAAAGCCTGGTCATGCTCATGCTCATCATGCT
CATGCTCATGCACTTCACGAGTTATTTAACGCAAATCACGAGTTCTTCAA
GATGCATGCTGGAGGATTCTGGAGAAGATCTGTTGTCATCAGCTGGCTGA
GATCATTTTGCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATATATA
GCTCTGCGACATGGGTTCATCATGACCCATTGCCCCACAAACCCATCATT
TAATTTTCACAAGTACATGCTAAGAACAGTGGAGATGGATTTCAAGAAAG
TTGTGACCATAAGCTGGTATCTCTGGCTCTTTGTTGTCGTCTTTCTTCTG
CTGAATGTAGGAGGATGGAATACTTACTTCTGGTTGTCTTTCTTGCCTTT
AATATTGTTACTAATGGTGGGTGCGAAACTGGAGAATATAATAAGTAGCT
TAGCTGTGGATGTTTGTGAGAAGAGAAACCGTGGGGAACAAGCAGTAATC
ACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGAGATTGTTCTCCA
ACTCGTCCACTTCATTCTCTTTCAGAATTCATTTGAGATCGCTTTCTTCT
TCTGGATTTTGTTCACATATGGAATACATTCGTGTATCATGGAGAAACTA
GGCTTCCTTATTCCACGGCTTGTCATGGGAGTGTTAGTCCAAGTGCTTTG
CAGTTACAGCACATTGCCACTTTATGCTCTCGTTACACAAATGGGTAGCA
AGTTCAAGAAAGGGATATTCGACGATTTAGTACACTCCACACTGAAAGTA
TGGTTGTCAGATACAAGGAGCAAAGGTGAATCCACGAGCGAGGCTCGCAG
GATGGAGATAGTACCTACCATTCCTGAGTCTTTTAATGTCCAAATCAATG
AAGTTATGGAATGTGACAACCCTTAA
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protein sequence of BnaA01T0060300WE

>BnaA01T0060300WE-P ID=BnaA01T0060300WE-P|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=polypeptide|length=492bp
MAEEENSLEYTPTWVVAFICFIIVLLSLLAERGLHHLGKYLKRKKQDALF
EALQKLKEELMLLGFISLMLTVSQTAIRHICVPPALVSNMFPCKKPLEEE
HHAPETSHSLVFNTRHLLSTGASPDHCTNKGKVPLISVEALHHLHIFIFV
LAVVHVIFCASTMVLGGARIQQWKRWEDNFKKIPSQKDASKPGHAHAHHA
HAHALHELFNANHEFFKMHAGGFWRRSVVISWLRSFCKQFYGSVTKSEYI
ALRHGFIMTHCPTNPSFNFHKYMLRTVEMDFKKVVTISWYLWLFVVVFLL
LNVGGWNTYFWLSFLPLILLLMVGAKLENIISSLAVDVCEKRNRGEQAVI
TPSDELFWFHRPEIVLQLVHFILFQNSFEIAFFFWILFTYGIHSCIMEKL
GFLIPRLVMGVLVQVLCSYSTLPLYALVTQMGSKFKKGIFDDLVHSTLKV
WLSDTRSKGESTSEARRMEIVPTIPESFNVQINEVMECDNP.
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mRNA from alignment at westarv0_A01:4186063..4188588-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0060300WE ID=BnaA01T0060300WE|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=mRNA|length=2526bp|location=Sequence derived from alignment at westarv0_A01:4186063..4188588- (Brassica napus Westar)
ATGGCAGAAGAGGAGAATTCACTTGAATATACACCCACATGGGTCGTAGC
GTTTATCTGTTTCATCATCGTTCTCTTGTCCCTGCTCGCTGAACGTGGTC
TTCATCATCTTGGAAAGGTACGTATATACATCACTGTCTATATCTGTAAG
TCTAAGGTCTCTTCTTGTAATAACTCTACCATTGTCTCTGTTCCAGTATC
TGAAGCGTAAAAAACAAGATGCCTTGTTTGAGGCCTTGCAGAAACTTAAA
GAAGGTTTCTTCTTCTTTTCAATTTTGGAACATGAATCTGTTGATTGGTT
TACACCTGAACATGACCAAAATTGTGTTTCCTGAAACAGAACTGATGCTT
TTGGGATTCATCTCGCTAATGTTAACGGTATCTCAGACAGCAATCAGGCA
TATATGTGTCCCACCAGCTCTTGTTAGCAACATGTTCCCTTGTAAGAAGC
CATTAGAGGAGGAGCATCATGCTCCTGAAACATCTCATTCGCTTGTCTTC
AATACACGACATTTGCTTTCAACAGGAGCAAGTCCAGACCATTGTACTAA
CAAGGTAATATTTCCCTTGAAACTCCTATCTCACTCTGGATGCTTTTCTA
TTATTAGTATCTTGCTTTTTTTCATCAACATGGTTTTGCAGGGGAAGGTT
CCTTTAATATCCGTTGAAGCGTTACATCATCTCCATATCTTTATATTCGT
GCTAGCGGTTGTTCACGTCATCTTCTGTGCTTCAACGATGGTTCTTGGAG
GAGCTAGGGTAATGTAACTTGCTTTTGTTAGCGTTTTTCGCAAGTAACTG
AACAACATTAGAACTTTCTATTCAAAAGCTTTCTCTTGTTTTGCTCATAT
GATTTGAAATTACATGTAGATACAACAATGGAAGCGTTGGGAGGATAATT
TCAAGAAGATTCCTTCTCAAAAAGGTGAGATTCGACATTGGTATTTTGTT
GATTTTTTTGCGTCTTAAACACCATCTAAATATTAAGAAAAAAACATGTT
TCAGATGCATCAAAGCCTGGTCATGCTCATGCTCATCATGCTCATGCTCA
TGCACTTCACGAGTTATTTAACGCAAATCACGAGTTCTTCAAGATGCATG
CTGGAGGATTCTGGAGAAGATCTGTTGTCATCAGCTGGCTGGTGAGTCTT
GGATACTAATACCAAAACAAACGTATTACACATCAAACAAGTTTGTCTAG
ATCTTATTTGATATCTGATGAGATCATCCAATGTGGTGCAGAGATCATTT
TGCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATATATAGCTCTGCG
ACATGGGTTCATCATGGTCTTACTTCACTCTCTTTTTTCCAACATGTTAT
TTCCAGTCTTTTATGTAACAATAACAATATGTATTATTCCTTCATTTTTC
CAGACCCATTGCCCCACAAACCCATCATTTAATTTTCACAAGTACATGCT
AAGAACAGTGGAGATGGATTTCAAGAAAGTTGTGACCATAAGGTATTTAG
CTCTTTTAGATTACACACACCAATGGCTTCATAAGTTTTTTTGTCTAACA
CCATTTTTGTATGATGTGATGGTATAAATATAAAGCTGGTATCTCTGGCT
CTTTGTTGTCGTCTTTCTTCTGCTGAATGTAGGAGGATGGAATACTTACT
TCTGGTTGTCTTTCTTGCCTTTAATAGTAAGTTCATTTAGTTAATGATCT
AATCATATTTTTGAATTCTTGGAATGCTATACTTCAATGTGTTTATCTAA
ATGTAGTTGTTACTAATGGTGGGTGCGAAACTGGAGAATATAATAAGTAG
CTTAGCTGTGGATGTTTGTGAGAAGAGAAACCGTGGGGAACAAGCAGTAA
TCACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGAGATTGTTCTC
CAACTCGTCCACTTCATTCTCTTTCAGAATTCATTTGAGATCGCTTTCTT
CTTCTGGATTTTGGTACTTTCATTTTTCTTCCTTTTCTAAGAGTTTTGTT
TGAACAATCACAATGCTAATAGATGATTTCTCCATCGTATCATCAGTTCA
CATATGGAATACATTCGTGTATCATGGAGAAACTAGGCTTCCTTATTCCA
CGGCTTGTCATGGGGTAATAACAAGATGCACACTTGCAAGTCTAAATAAA
CTATCATTTGATCTGATGAACTCTTTTGTCCAAACAGAGTGTTAGTCCAA
GTGCTTTGCAGTTACAGCACATTGCCACTTTATGCTCTCGTTACACAAGT
AAGTATATAACCACAACAAGCCTAGCTAATATACACTACACAACTAAACA
AAGTTTTGAATCACTTGTTTTTGTTTTCTAATTCTAAAAGATGGGTAGCA
AGTTCAAGAAAGGGATATTCGACGATTTAGTACACTCCACACTGAAAGTA
TGGTTGTCAGATACAAGGAGCAAAGGTGAATCCACGAGCGAGGCTCGCAG
GATGGAGATAGTACCTACCATTCCTGAGTCTTTTAATGTCCAAATCAATG
AAGTTATGGAATGTGACAACCCTTAA
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Coding sequence (CDS) from alignment at westarv0_A01:4186063..4188588-

>BnaA01T0060300WE ID=BnaA01T0060300WE|Name=BnaA01T0060300WE|organism=Brassica napus Westar|type=CDS|length=1476bp|location=Sequence derived from alignment at westarv0_A01:4186063..4188588- (Brassica napus Westar)
ATGGCAGAAGAGGAGAATTCACTTGAATATACACCCACATGGGTCGTAGC
GTTTATCTGTTTCATCATCGTTCTCTTGTCCCTGCTCGCTGAACGTGGTC
TTCATCATCTTGGAAAGTATCTGAAGCGTAAAAAACAAGATGCCTTGTTT
GAGGCCTTGCAGAAACTTAAAGAAGAACTGATGCTTTTGGGATTCATCTC
GCTAATGTTAACGGTATCTCAGACAGCAATCAGGCATATATGTGTCCCAC
CAGCTCTTGTTAGCAACATGTTCCCTTGTAAGAAGCCATTAGAGGAGGAG
CATCATGCTCCTGAAACATCTCATTCGCTTGTCTTCAATACACGACATTT
GCTTTCAACAGGAGCAAGTCCAGACCATTGTACTAACAAGGGGAAGGTTC
CTTTAATATCCGTTGAAGCGTTACATCATCTCCATATCTTTATATTCGTG
CTAGCGGTTGTTCACGTCATCTTCTGTGCTTCAACGATGGTTCTTGGAGG
AGCTAGGATACAACAATGGAAGCGTTGGGAGGATAATTTCAAGAAGATTC
CTTCTCAAAAAGATGCATCAAAGCCTGGTCATGCTCATGCTCATCATGCT
CATGCTCATGCACTTCACGAGTTATTTAACGCAAATCACGAGTTCTTCAA
GATGCATGCTGGAGGATTCTGGAGAAGATCTGTTGTCATCAGCTGGCTGA
GATCATTTTGCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATATATA
GCTCTGCGACATGGGTTCATCATGACCCATTGCCCCACAAACCCATCATT
TAATTTTCACAAGTACATGCTAAGAACAGTGGAGATGGATTTCAAGAAAG
TTGTGACCATAAGCTGGTATCTCTGGCTCTTTGTTGTCGTCTTTCTTCTG
CTGAATGTAGGAGGATGGAATACTTACTTCTGGTTGTCTTTCTTGCCTTT
AATATTGTTACTAATGGTGGGTGCGAAACTGGAGAATATAATAAGTAGCT
TAGCTGTGGATGTTTGTGAGAAGAGAAACCGTGGGGAACAAGCAGTAATC
ACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGAGATTGTTCTCCA
ACTCGTCCACTTCATTCTCTTTCAGAATTCATTTGAGATCGCTTTCTTCT
TCTGGATTTTGTTCACATATGGAATACATTCGTGTATCATGGAGAAACTA
GGCTTCCTTATTCCACGGCTTGTCATGGGAGTGTTAGTCCAAGTGCTTTG
CAGTTACAGCACATTGCCACTTTATGCTCTCGTTACACAAATGGGTAGCA
AGTTCAAGAAAGGGATATTCGACGATTTAGTACACTCCACACTGAAAGTA
TGGTTGTCAGATACAAGGAGCAAAGGTGAATCCACGAGCGAGGCTCGCAG
GATGGAGATAGTACCTACCATTCCTGAGTCTTTTAATGTCCAAATCAATG
AAGTTATGGAATGTGACAACCCTTAA
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