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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BnaA01G0059400WE | BnaA01G0059400WE | Brassica napus Westar | gene | westarv0_A01 4154446..4157881 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0059400WE.exon1 | BnaA01T0059400WE.exon1 | Brassica napus Westar | exon | westarv0_A01 4154446..4154614 + |
BnaA01T0059400WE.exon2 | BnaA01T0059400WE.exon2 | Brassica napus Westar | exon | westarv0_A01 4154711..4154800 + |
BnaA01T0059400WE.exon3 | BnaA01T0059400WE.exon3 | Brassica napus Westar | exon | westarv0_A01 4154882..4154982 + |
BnaA01T0059400WE.exon4 | BnaA01T0059400WE.exon4 | Brassica napus Westar | exon | westarv0_A01 4155077..4155196 + |
BnaA01T0059400WE.exon5 | BnaA01T0059400WE.exon5 | Brassica napus Westar | exon | westarv0_A01 4155295..4155376 + |
BnaA01T0059400WE.exon6 | BnaA01T0059400WE.exon6 | Brassica napus Westar | exon | westarv0_A01 4155463..4155530 + |
BnaA01T0059400WE.exon7 | BnaA01T0059400WE.exon7 | Brassica napus Westar | exon | westarv0_A01 4155605..4155792 + |
BnaA01T0059400WE.exon8 | BnaA01T0059400WE.exon8 | Brassica napus Westar | exon | westarv0_A01 4155871..4156219 + |
BnaA01T0059400WE.exon9 | BnaA01T0059400WE.exon9 | Brassica napus Westar | exon | westarv0_A01 4156300..4157766 + |
BnaA01T0059400WE.exon10 | BnaA01T0059400WE.exon10 | Brassica napus Westar | exon | westarv0_A01 4157870..4157881 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BnaA01T0059400WE | cds.BnaA01T0059400WE | Brassica napus Westar | CDS | westarv0_A01 4154446..4154614 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0059400WE ID=BnaA01T0059400WE|Name=BnaA01T0059400WE|organism=Brassica napus Westar|type=mRNA|length=2646bp|location=Sequence derived from alignment at westarv0_A01:4154446..4157881+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGGCAGGAGCAGGAGGAGAAGAGAAGATACTGGTGTCGGTGAGGGT TAGACCTCTAAACGAGAAAGAGAAGACAAGAAACGATAGATGTGATTGGG AATGCATCAACAACACCACCATCATCTGCAACGCTCATAACTTGTCTGAT AAGCCTTCCTTCACCTTTGACAAGGTGTTTGGATTTGAATGTCCTACAAA GCAAGTGTATGATGATGGAGCCAGAGAGGTTGCACTTTGTGTCCTCTCCG GAATCAACTCAAGCATCTTTGCTTATGGACAGACAAGTAGTGGCAAAACA TACACCATGACAGGAATCACTGGATTTGCAATCAATGATATTTTTCTTTA CATTGACAAGCATAAACAAGAAAGAAAATTCACACTAAAATTCTCAGCAA TGGAGATCTACAATGAAGCTGTGAGGGATCTACTTTGTGAAGATAATAAT AATCCACTTAGGCTTCTTGATGATCCTGAGAGAGGAACGGTCGTTGAGAA ACTTAAAGAGGAGACTATCACAGACAGAAACCATCTAGAAGAACTCATAT CCATATGCGAGACTCAAAGGAAGATTGGAGAGACGTCTTTAAATGAGACT AGCTCAAGATCTCATCAGATTCTCAGACTGACAATAGAAAGTTCAAAAAG AGAGGTTTCACCAGAGAGCTCAGCGATTCTTGCAGCATCAGTGTGCTTTG TTGATCTAGCAGGAAGTGAAAGAGCTTCTCAGACATTATCTGCTGGTTCA AGACTCAAAGAAGGTTGTCACATTAACCGGAGTTTACTTACTCTTGGAAC TGTCATCAGAAAACTCAGCAAAGGGAAACATGGACACATACCATATAGAG ACTCAAAGCTAACACGCATACTTCAAAACTCATTGGGAGGAAACGCAAGA ACGGCTATCATATGTACAATGAGCCCTGCTCGTAGTCATCTTGAACAATC AAGAAACACATTACTCTTTGCAACTTGTGCTAAAGAGGTGACCACAAACG CTCAAGTGAACATGGTTGTGTCTGAGAAAGCTTTGGTGAAGCAGCTCCAG AGGGAACTGATGAGAATGGAGAATGAGTTGAAGAATCTTGGACTTGGTGG TTCTTCTTCTTCAACCTCTGATGAGTTTCATTCATTGCTCAAACAGAAAG AAGAAGTTATTGAAAAGATGGAGGAGCAGATCCAGGAGCTTAAGTGGCAA CGAGATGTAGCTCAATCTCGGGTAGAGAATCTGCTTAAATCAGCAGCGGA ATATCAATCATCTTCAAGCTCAGTTGATTACAGCAGGAGAAAAAGCTATG ACTCAACAGATTTTGATGAGCCTCGTTTGCTAAATAACATGGTGAAAAGT AACTTGTACTCTCCTGATGAAGATGGTTTCTTGCTGGATGATACTACTCC TCGAATCCCGGAGAATGGAGTGAGCAACAAGTGGGAGGAGATGGGTCAAA GGACCATACAAGAACAAGAAGATGCTTGCAAAGAAGTAAGATGCATTGAA GAGAATAGTGAAAGAGTAATAATCCAAGACACAGTAGACAACATTGTCGA AAAGAAAGTGGAGTCATTATCAGATGAGAATGAAGCTATGGAGTCCAAAA AGGAAGATGCTGATTCATTTTTAGAGGAGATAGATACAGAGAAGAGTTTA TATGCTGAACATGAAGCCCAAGATGAGCTAACTATAACCAAGTTAGCTGA AGAATTCAAAGAGACAGAGAAATCTTCAAAGAAAGAAGACATGAGACAGA ACATGCCTAAGGATCAGCAGCCATGTGTTGTAGAATACAAACAAAACTAC AAATCTTCTATGGCTGATGAGGATGAAGCTAAGGAAGATTCTGATTCATC TTTAAATGCTAAACCTGAAGCCCAAGATGAGCTAACTATAGACAAGTTGG TAGAAGAAGTGCAAGATACAGAAAAATCTGTGGAAAAACAAAGGCAATCA TCTTCAAAGACAGAAGACATGGAACAGAATCTGTCTAAGGACCAGTCATG TCTGGAGAACAAACAACATTACAAATCTATTATAGCCAATGATGATGAAG CTATAAAGTCAGAAAAGGAAGATGCTGGTTCCTTTTTATCTGCTAAACTT GAAGCCAAAGATGAGCTAGCTGTACACAAGTTTGCACAAGAAGTGCAAGA AACAGAACAAAGGCAATCTTCAAAGAAAGAAGACTTAGAGCAGAATCTGT CTAGGGACCAGTCATGTCTGGAAGACAAACAACACTGTGAACCTCTTATG GCGAATGATAATGAAACTATAGAGTTTGAGAAGGAAGATGAAGCCAAAGA TGAGCTAACTATCAAAAGGTTAGCAGATACGGGACAGAACTTGTGGCCTA TGGCCAATGAGAATGAAGCTATGAAGTCAGTAAAGGAAGATTCTGATTCA TCTTTAAAGACAATAGATACAAAGATGAGTTTATCTGCTAAACATGAAGC TGAAGCTGAGCAACCTACAAACAAGCTAGAAGAAGCCAATGAGACTAATC AATATGTGGAGAAGGAAGAAACAAACCCTAGCTTGTCTCCCAAGAAAAAA GACACACAACAGTCACAACAACATGTACAAGTCCATGGAGGCTCCCATGA CGATGAGACTACATACGAGGCTCTTAAAAACAAGGAGATAGCTTGA back to topprotein sequence of BnaA01T0059400WE >BnaA01T0059400WE-P ID=BnaA01T0059400WE-P|Name=BnaA01T0059400WE|organism=Brassica napus Westar|type=polypeptide|length=882bp
MSAGAGGEEKILVSVRVRPLNEKEKTRNDRCDWECINNTTIICNAHNLSD KPSFTFDKVFGFECPTKQVYDDGAREVALCVLSGINSSIFAYGQTSSGKT YTMTGITGFAINDIFLYIDKHKQERKFTLKFSAMEIYNEAVRDLLCEDNN NPLRLLDDPERGTVVEKLKEETITDRNHLEELISICETQRKIGETSLNET SSRSHQILRLTIESSKREVSPESSAILAASVCFVDLAGSERASQTLSAGS RLKEGCHINRSLLTLGTVIRKLSKGKHGHIPYRDSKLTRILQNSLGGNAR TAIICTMSPARSHLEQSRNTLLFATCAKEVTTNAQVNMVVSEKALVKQLQ RELMRMENELKNLGLGGSSSSTSDEFHSLLKQKEEVIEKMEEQIQELKWQ RDVAQSRVENLLKSAAEYQSSSSSVDYSRRKSYDSTDFDEPRLLNNMVKS NLYSPDEDGFLLDDTTPRIPENGVSNKWEEMGQRTIQEQEDACKEVRCIE ENSERVIIQDTVDNIVEKKVESLSDENEAMESKKEDADSFLEEIDTEKSL YAEHEAQDELTITKLAEEFKETEKSSKKEDMRQNMPKDQQPCVVEYKQNY KSSMADEDEAKEDSDSSLNAKPEAQDELTIDKLVEEVQDTEKSVEKQRQS SSKTEDMEQNLSKDQSCLENKQHYKSIIANDDEAIKSEKEDAGSFLSAKL EAKDELAVHKFAQEVQETEQRQSSKKEDLEQNLSRDQSCLEDKQHCEPLM ANDNETIEFEKEDEAKDELTIKRLADTGQNLWPMANENEAMKSVKEDSDS SLKTIDTKMSLSAKHEAEAEQPTNKLEEANETNQYVEKEETNPSLSPKKK DTQQSQQHVQVHGGSHDDETTYEALKNKEIA. back to topmRNA from alignment at westarv0_A01:4154446..4157881+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0059400WE ID=BnaA01T0059400WE|Name=BnaA01T0059400WE|organism=Brassica napus Westar|type=mRNA|length=3436bp|location=Sequence derived from alignment at westarv0_A01:4154446..4157881+ (Brassica napus Westar) ATGTCGGCAGGAGCAGGAGGAGAAGAGAAGATACTGGTGTCGGTGAGGGT
TAGACCTCTAAACGAGAAAGAGAAGACAAGAAACGATAGATGTGATTGGG
AATGCATCAACAACACCACCATCATCTGCAACGCTCATAACTTGTCTGAT
AAGCCTTCCTTCACCTTTGGTAATAAACCGAAAAAAAAACTTAAAATTAC
TAATTACACCAACATATCAATTACTAACTATAAAAATCACATACCAATCA
ATTATTGTGTTACAGACAAGGTGTTTGGATTTGAATGTCCTACAAAGCAA
GTGTATGATGATGGAGCCAGAGAGGTTGCACTTTGTGTCCTCTCCGGAAT
CAACTGTAAGAAACATAATTGAATCGTTTAAATATATATCTACACTAGAT
CATGTCATAATGGAGATGGTTATTGTTTTTTTGCAGCAAGCATCTTTGCT
TATGGACAGACAAGTAGTGGCAAAACATACACCATGACAGGAATCACTGG
ATTTGCAATCAATGATATTTTTCTTTACATTGACAAGGTTACACACATTA
ACTTCTAAGTTACAACTCTTGTTTATTTTATTTTCTATCAATATTTCACT
CACTGAGAATATTCTCTGTTGTTTCTTTTAGCATAAACAAGAAAGAAAAT
TCACACTAAAATTCTCAGCAATGGAGATCTACAATGAAGCTGTGAGGGAT
CTACTTTGTGAAGATAATAATAATCCACTTAGGCTTCTTGATGATCCTGA
GGTCCCTTCTCAATAACTTCTTTTCCAAGCAATTAATTCTTTCTAGTCAT
CATAATTAGTTACACAATTACTGAAAACATTAATGTCAACTTTGATTAGA
GAGGAACGGTCGTTGAGAAACTTAAAGAGGAGACTATCACAGACAGAAAC
CATCTAGAAGAACTCATATCCATATGCGAGAGTAATTAACTAACCACACT
CAATTAATTACTTGATTATATATTATCAACAAGTTGATGATATACTGAAT
CTATGGTCTTTTCTCAGCTCAAAGGAAGATTGGAGAGACGTCTTTAAATG
AGACTAGCTCAAGATCTCATCAGATTCTCAGACTGGTACTCATATTTATC
TATCAATGATAAAGACTACACTCATCAGATCCTCACATTAATGTTAATTT
CTCATGCAGACAATAGAAAGTTCAAAAAGAGAGGTTTCACCAGAGAGCTC
AGCGATTCTTGCAGCATCAGTGTGCTTTGTTGATCTAGCAGGAAGTGAAA
GAGCTTCTCAGACATTATCTGCTGGTTCAAGACTCAAAGAAGGTTGTCAC
ATTAACCGGAGTTTACTTACTCTTGGAACTGTCATCAGAAAACTCAGGTA
ATGTCTAAAATAGAGTTCTCCTCTAAGAGTCTCTTAAGAAGTTAATATGA
ATGTGTTTTCTTGGAACTACTGCAGCAAAGGGAAACATGGACACATACCA
TATAGAGACTCAAAGCTAACACGCATACTTCAAAACTCATTGGGAGGAAA
CGCAAGAACGGCTATCATATGTACAATGAGCCCTGCTCGTAGTCATCTTG
AACAATCAAGAAACACATTACTCTTTGCAACTTGTGCTAAAGAGGTGACC
ACAAACGCTCAAGTGAACATGGTTGTGTCTGAGAAAGCTTTGGTGAAGCA
GCTCCAGAGGGAACTGATGAGAATGGAGAATGAGTTGAAGAATCTTGGAC
TTGGTGGTTCTTCTTCTTCAACCTCTGATGAGTTTCATTCATTGCTCAAA
CAGAAAGAAGAAGTTATTGAAAAGGTTAGTTTGTTTTTGAATGCTTCTTT
TGTGTGTTTTGTTAAAGAAACATCACTTAATATTACTTGTGCAACAATCT
ACAGATGGAGGAGCAGATCCAGGAGCTTAAGTGGCAACGAGATGTAGCTC
AATCTCGGGTAGAGAATCTGCTTAAATCAGCAGCGGAATATCAATCATCT
TCAAGCTCAGTTGATTACAGCAGGAGAAAAAGCTATGACTCAACAGATTT
TGATGAGCCTCGTTTGCTAAATAACATGGTGAAAAGTAACTTGTACTCTC
CTGATGAAGATGGTTTCTTGCTGGATGATACTACTCCTCGAATCCCGGAG
AATGGAGTGAGCAACAAGTGGGAGGAGATGGGTCAAAGGACCATACAAGA
ACAAGAAGATGCTTGCAAAGAAGTAAGATGCATTGAAGAGAATAGTGAAA
GAGTAATAATCCAAGACACAGTAGACAACATTGTCGAAAAGAAAGTGGAG
TCATTATCAGATGAGAATGAAGCTATGGAGTCCAAAAAGGAAGATGCTGA
TTCATTTTTAGAGGAGATAGATACAGAGAAGAGTTTATATGCTGAACATG
AAGCCCAAGATGAGCTAACTATAACCAAGTTAGCTGAAGAATTCAAAGAG
ACAGAGAAATCTTCAAAGAAAGAAGACATGAGACAGAACATGCCTAAGGA
TCAGCAGCCATGTGTTGTAGAATACAAACAAAACTACAAATCTTCTATGG
CTGATGAGGATGAAGCTAAGGAAGATTCTGATTCATCTTTAAATGCTAAA
CCTGAAGCCCAAGATGAGCTAACTATAGACAAGTTGGTAGAAGAAGTGCA
AGATACAGAAAAATCTGTGGAAAAACAAAGGCAATCATCTTCAAAGACAG
AAGACATGGAACAGAATCTGTCTAAGGACCAGTCATGTCTGGAGAACAAA
CAACATTACAAATCTATTATAGCCAATGATGATGAAGCTATAAAGTCAGA
AAAGGAAGATGCTGGTTCCTTTTTATCTGCTAAACTTGAAGCCAAAGATG
AGCTAGCTGTACACAAGTTTGCACAAGAAGTGCAAGAAACAGAACAAAGG
CAATCTTCAAAGAAAGAAGACTTAGAGCAGAATCTGTCTAGGGACCAGTC
ATGTCTGGAAGACAAACAACACTGTGAACCTCTTATGGCGAATGATAATG
AAACTATAGAGTTTGAGAAGGAAGATGAAGCCAAAGATGAGCTAACTATC
AAAAGGTTAGCAGATACGGGACAGAACTTGTGGCCTATGGCCAATGAGAA
TGAAGCTATGAAGTCAGTAAAGGAAGATTCTGATTCATCTTTAAAGACAA
TAGATACAAAGATGAGTTTATCTGCTAAACATGAAGCTGAAGCTGAGCAA
CCTACAAACAAGCTAGAAGAAGCCAATGAGACTAATCAATATGTGGAGAA
GGAAGAAACAAACCCTAGCTTGTCTCCCAAGAAAAAAGACACACAACAGT
CACAACAACATGTACAAGTCCATGGAGGCTCCCATGACGATGAGACTACA
TACGAGGCTCTTAAAAACAAGGTGAAGGAGATGCAGAAGACAATCGAATA
CTTTATGAGCATGCACTCAGCAGAAGAGAATCAATCTCCATCTTTTAACA
CAATAAGTGTCAACACCAGTCCAGGAGATAGCTTGA back to topCoding sequence (CDS) from alignment at westarv0_A01:4154446..4157881+ >BnaA01T0059400WE ID=BnaA01T0059400WE|Name=BnaA01T0059400WE|organism=Brassica napus Westar|type=CDS|length=2646bp|location=Sequence derived from alignment at westarv0_A01:4154446..4157881+ (Brassica napus Westar) ATGTCGGCAGGAGCAGGAGGAGAAGAGAAGATACTGGTGTCGGTGAGGGT TAGACCTCTAAACGAGAAAGAGAAGACAAGAAACGATAGATGTGATTGGG AATGCATCAACAACACCACCATCATCTGCAACGCTCATAACTTGTCTGAT AAGCCTTCCTTCACCTTTGACAAGGTGTTTGGATTTGAATGTCCTACAAA GCAAGTGTATGATGATGGAGCCAGAGAGGTTGCACTTTGTGTCCTCTCCG GAATCAACTCAAGCATCTTTGCTTATGGACAGACAAGTAGTGGCAAAACA TACACCATGACAGGAATCACTGGATTTGCAATCAATGATATTTTTCTTTA CATTGACAAGCATAAACAAGAAAGAAAATTCACACTAAAATTCTCAGCAA TGGAGATCTACAATGAAGCTGTGAGGGATCTACTTTGTGAAGATAATAAT AATCCACTTAGGCTTCTTGATGATCCTGAGAGAGGAACGGTCGTTGAGAA ACTTAAAGAGGAGACTATCACAGACAGAAACCATCTAGAAGAACTCATAT CCATATGCGAGACTCAAAGGAAGATTGGAGAGACGTCTTTAAATGAGACT AGCTCAAGATCTCATCAGATTCTCAGACTGACAATAGAAAGTTCAAAAAG AGAGGTTTCACCAGAGAGCTCAGCGATTCTTGCAGCATCAGTGTGCTTTG TTGATCTAGCAGGAAGTGAAAGAGCTTCTCAGACATTATCTGCTGGTTCA AGACTCAAAGAAGGTTGTCACATTAACCGGAGTTTACTTACTCTTGGAAC TGTCATCAGAAAACTCAGCAAAGGGAAACATGGACACATACCATATAGAG ACTCAAAGCTAACACGCATACTTCAAAACTCATTGGGAGGAAACGCAAGA ACGGCTATCATATGTACAATGAGCCCTGCTCGTAGTCATCTTGAACAATC AAGAAACACATTACTCTTTGCAACTTGTGCTAAAGAGGTGACCACAAACG CTCAAGTGAACATGGTTGTGTCTGAGAAAGCTTTGGTGAAGCAGCTCCAG AGGGAACTGATGAGAATGGAGAATGAGTTGAAGAATCTTGGACTTGGTGG TTCTTCTTCTTCAACCTCTGATGAGTTTCATTCATTGCTCAAACAGAAAG AAGAAGTTATTGAAAAGATGGAGGAGCAGATCCAGGAGCTTAAGTGGCAA CGAGATGTAGCTCAATCTCGGGTAGAGAATCTGCTTAAATCAGCAGCGGA ATATCAATCATCTTCAAGCTCAGTTGATTACAGCAGGAGAAAAAGCTATG ACTCAACAGATTTTGATGAGCCTCGTTTGCTAAATAACATGGTGAAAAGT AACTTGTACTCTCCTGATGAAGATGGTTTCTTGCTGGATGATACTACTCC TCGAATCCCGGAGAATGGAGTGAGCAACAAGTGGGAGGAGATGGGTCAAA GGACCATACAAGAACAAGAAGATGCTTGCAAAGAAGTAAGATGCATTGAA GAGAATAGTGAAAGAGTAATAATCCAAGACACAGTAGACAACATTGTCGA AAAGAAAGTGGAGTCATTATCAGATGAGAATGAAGCTATGGAGTCCAAAA AGGAAGATGCTGATTCATTTTTAGAGGAGATAGATACAGAGAAGAGTTTA TATGCTGAACATGAAGCCCAAGATGAGCTAACTATAACCAAGTTAGCTGA AGAATTCAAAGAGACAGAGAAATCTTCAAAGAAAGAAGACATGAGACAGA ACATGCCTAAGGATCAGCAGCCATGTGTTGTAGAATACAAACAAAACTAC AAATCTTCTATGGCTGATGAGGATGAAGCTAAGGAAGATTCTGATTCATC TTTAAATGCTAAACCTGAAGCCCAAGATGAGCTAACTATAGACAAGTTGG TAGAAGAAGTGCAAGATACAGAAAAATCTGTGGAAAAACAAAGGCAATCA TCTTCAAAGACAGAAGACATGGAACAGAATCTGTCTAAGGACCAGTCATG TCTGGAGAACAAACAACATTACAAATCTATTATAGCCAATGATGATGAAG CTATAAAGTCAGAAAAGGAAGATGCTGGTTCCTTTTTATCTGCTAAACTT GAAGCCAAAGATGAGCTAGCTGTACACAAGTTTGCACAAGAAGTGCAAGA AACAGAACAAAGGCAATCTTCAAAGAAAGAAGACTTAGAGCAGAATCTGT CTAGGGACCAGTCATGTCTGGAAGACAAACAACACTGTGAACCTCTTATG GCGAATGATAATGAAACTATAGAGTTTGAGAAGGAAGATGAAGCCAAAGA TGAGCTAACTATCAAAAGGTTAGCAGATACGGGACAGAACTTGTGGCCTA TGGCCAATGAGAATGAAGCTATGAAGTCAGTAAAGGAAGATTCTGATTCA TCTTTAAAGACAATAGATACAAAGATGAGTTTATCTGCTAAACATGAAGC TGAAGCTGAGCAACCTACAAACAAGCTAGAAGAAGCCAATGAGACTAATC AATATGTGGAGAAGGAAGAAACAAACCCTAGCTTGTCTCCCAAGAAAAAA GACACACAACAGTCACAACAACATGTACAAGTCCATGGAGGCTCCCATGA CGATGAGACTACATACGAGGCTCTTAAAAACAAGGAGATAGCTTGA back to top
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