BnaA01T0055800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0055800WE
Unique NameBnaA01T0055800WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:3924721..3926979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0055800WEBnaA01G0055800WEBrassica napus Westargenewestarv0_A01 3924721..3926979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0055800WEBnaA01T0055800WE-PBrassica napus Westarpolypeptidewestarv0_A01 3924744..3926836 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0055800WE.utr5p1BnaA01T0055800WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 3924721..3924743 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0055800WE.exon1BnaA01T0055800WE.exon1Brassica napus Westarexonwestarv0_A01 3924721..3925079 +
BnaA01T0055800WE.exon2BnaA01T0055800WE.exon2Brassica napus Westarexonwestarv0_A01 3925291..3925703 +
BnaA01T0055800WE.exon3BnaA01T0055800WE.exon3Brassica napus Westarexonwestarv0_A01 3925782..3925887 +
BnaA01T0055800WE.exon4BnaA01T0055800WE.exon4Brassica napus Westarexonwestarv0_A01 3925966..3926031 +
BnaA01T0055800WE.exon5BnaA01T0055800WE.exon5Brassica napus Westarexonwestarv0_A01 3926121..3926291 +
BnaA01T0055800WE.exon6BnaA01T0055800WE.exon6Brassica napus Westarexonwestarv0_A01 3926380..3926465 +
BnaA01T0055800WE.exon7BnaA01T0055800WE.exon7Brassica napus Westarexonwestarv0_A01 3926551..3926635 +
BnaA01T0055800WE.exon8BnaA01T0055800WE.exon8Brassica napus Westarexonwestarv0_A01 3926717..3926979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0055800WEcds.BnaA01T0055800WEBrassica napus WestarCDSwestarv0_A01 3924744..3925079 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0055800WE.utr3p1BnaA01T0055800WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 3926837..3926979 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=1549bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGACGTTTGCTTGTGGTCAATCTCTCACACAAGCTGAGCAAGA
AAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCCGGAGACGAAGA
GACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAAGGGATGAAGTG
AAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCGAACATTCTTGG
CGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCCTTACGAGGAGA
GGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTGCCAAGGAGAAG
CGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAGAAGCAGAAGAC
TGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCAGGAAGGTGAAC
AGGACATCAAGAAGAAGAGCAAGAAGGAGAAGGATCCTCTGAAGCCAAAG
CATCCCATATCTGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTT
ACGCGAAGAGAACAAGAACGTTGTAGAGGTCGCAAAGATGACCGGTGAAG
AGTGGAAGAAGCTGTCGGATAAAGAAAAAGCACCCTATGAAGAGGTGGCA
AAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAAGAGGAC
GAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGCTCTTGA
AACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAGAAAACC
GACAATCTGATCAAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAA
CGTTGACCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCA
GCAAAGACGTAAGGAAAGCTTTGACAGAAGAACGTCCAGGGACGAGCAAC
TCAACGGTCACCGCTCTAATCTCAGTGAAATGGAAGGAATTGGGTGAAGA
AGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATGGAAGCATACA
AGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGCTACGACCAGT
AGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAATGTTCAAGTCC
TGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTGAACTCAAAGT
GATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTACATTTTAATT
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protein sequence of BnaA01T0055800WE

>BnaA01T0055800WE-P ID=BnaA01T0055800WE-P|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=polypeptide|length=461bp
MATSADPAPTKKSRNSRKALKQKNEIATTETPPSPVSAKAKSAKSFEKDL
MEMQAMMEKMKIEKDKTEELLKEKDEILRRKEEELVTRDAEQEKLKTELK
KLQKMKEFKPNMTFACGQSLTQAEQEKVNKKKKKKKDCPETKRPSSSYIL
WCKEQRDEVKKQNPEADFKETANILGAKWKSLSAEEKKPYEERYKVEKEA
YLQVIAKEKREREAMKLLDDEQKQKTAMDLLDQYLQFVQEGEQDIKKKSK
KEKDPLKPKHPISAFLVYANERRAALREENKNVVEVAKMTGEEWKKLSDK
EKAPYEEVAKKNKETYLQAMEEYKRTKEEEAMSQKKEEEELLKLHKQEAL
QLLKKKEKTDNLIKKEKETKKKKNENVDPNKPKKPASSFILFSKDVRKAL
TEERPGTSNSTVTALISVKWKELGEEEKQSYNNKAAKLMEAYKKELEDYN
KKSAAATTSS.
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mRNA from alignment at westarv0_A01:3924721..3926979+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=2259bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGGTATACCTATCCTCTAGATCTAGATCTAGCCTTTACGTTTT
CGCTTCGGTTAGGTTTTGTGATTAGATTAGAGATTGATTCTACAAATACG
ATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCTAAAAATA
CGATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCAAGATT
GTTCTGTGTTGTTCTCTCAGACGTTTGCTTGTGGTCAATCTCTCACACAA
GCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCC
GGAGACGAAGAGACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAA
GGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCG
AACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCC
TTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTG
CCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAG
AAGCAGAAGACTGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCA
GGAAGGTGAACAGGACATCAAGAAGAAGAGCAAGTGAGATATACCTACTG
ATGAATATACCAATTGCTCATCAAATGGTTGAACTGATTAGAGATGTTGT
TTGGTTTGCAGGAAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATC
TGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGA
ACAAGAACGTTGTAGAGGTATATCTCAAGTACTTTCTCTCAAGATCCATT
TTTTTTGCTAAATGTTGAATTTAACTTGTGGAGCGGTGGTTATAGGTCGC
AAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAAGAAAAAGCAC
CCTATGAAGAGGTTTGTGTTTCTTATATATATATGTTTGCATTCATAGCT
ATATAAAGACTTGGAGAGTGAATGAATTTTTGAGGTGTGATATTAAACAG
GTGGCAAAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAA
GAGGACGAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGC
TCTTGAAACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAG
AAAACCGACAATCTGATCAAGGTCATTCACTCACTCATACTTTTCCTTGT
CTCGCCTAAATGAATTTACAACTCAGAGACTAATGGTATCAAGATAATTT
ATATTGCAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAACGTTGA
CCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCAGGTACC
AACTTAAACTAAATGTGACTCAAGAGTATCCTGAACTTAATGCATTTCTA
ACTGTTTAAAAAAAAAACTTATGTCCACAGCAAAGACGTAAGGAAAGCTT
TGACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATC
TCAGTGAAATGGAAGGTATGTTAATTCACAACTCTACCTTTAATAACTCA
TTTGCTATAAACATATATCTCTCGTCTAAGTAAAATTACATTGCAGGAAT
TGGGTGAAGAAGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATG
GAAGCATACAAGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGC
TACGACCAGTAGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAAT
GTTCAAGTCCTGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTG
AACTCAAAGTGATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTAC
ATTTTAATT
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Coding sequence (CDS) from alignment at westarv0_A01:3924721..3926979+

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=CDS|length=1383bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
ATGGCCACCAGCGCAGATCCAGCTCCGACGAAGAAATCGAGGAACAGCCG
CAAGGCGTTGAAGCAGAAGAACGAGATCGCGACGACGGAGACTCCGCCGT
CCCCAGTCTCCGCCAAGGCGAAATCGGCGAAGTCGTTCGAGAAAGATCTG
ATGGAGATGCAGGCGATGATGGAGAAGATGAAGATCGAGAAGGATAAGAC
GGAGGAGTTGCTTAAGGAGAAGGACGAGATTCTGAGGAGGAAGGAGGAGG
AGCTTGTGACGAGAGACGCTGAGCAGGAGAAGCTCAAGACGGAGCTCAAG
AAGCTTCAGAAGATGAAGGAGTTCAAACCTAACATGACGTTTGCTTGTGG
TCAATCTCTCACACAAGCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGA
AGAAGAAGGATTGTCCGGAGACGAAGAGACCGTCGTCATCATACATACTG
TGGTGCAAGGAGCAAAGGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGA
CTTCAAGGAGACTGCGAACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTG
CGGAAGAGAAGAAGCCTTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCT
TACCTCCAGGTGATTGCCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCT
TCTGGATGATGAGCAGAAGCAGAAGACTGCTATGGATTTGCTTGATCAGT
ATCTCCAGTTTGTGCAGGAAGGTGAACAGGACATCAAGAAGAAGAGCAAG
AAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATCTGCCTTCCTGGT
TTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGAACAAGAACGTTG
TAGAGGTCGCAAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAA
GAAAAAGCACCCTATGAAGAGGTGGCAAAGAAGAACAAGGAGACATACCT
GCAAGCAATGGAGGAGTACAAGAGGACGAAGGAAGAAGAGGCCATGAGCC
AGAAGAAAGAAGAAGAGGAGCTCTTGAAACTCCACAAACAGGAAGCTCTC
CAACTGCTTAAGAAGAAGGAGAAAACCGACAATCTGATCAAGAAGGAGAA
AGAGACCAAGAAGAAGAAGAACGAAAACGTTGACCCAAACAAACCCAAGA
AGCCTGCTTCCTCATTCATCCTCTTCAGCAAAGACGTAAGGAAAGCTTTG
ACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATCTC
AGTGAAATGGAAGGAATTGGGTGAAGAAGAAAAGCAAAGTTACAACAACA
AAGCAGCAAAGTTGATGGAAGCATACAAGAAGGAACTTGAAGATTACAAC
AAGAAGAGTGCTGCGGCTACGACCAGTAGTTAG
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