BnaA01T0055800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=1549bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGACGTTTGCTTGTGGTCAATCTCTCACACAAGCTGAGCAAGA
AAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCCGGAGACGAAGA
GACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAAGGGATGAAGTG
AAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCGAACATTCTTGG
CGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCCTTACGAGGAGA
GGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTGCCAAGGAGAAG
CGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAGAAGCAGAAGAC
TGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCAGGAAGGTGAAC
AGGACATCAAGAAGAAGAGCAAGAAGGAGAAGGATCCTCTGAAGCCAAAG
CATCCCATATCTGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTT
ACGCGAAGAGAACAAGAACGTTGTAGAGGTCGCAAAGATGACCGGTGAAG
AGTGGAAGAAGCTGTCGGATAAAGAAAAAGCACCCTATGAAGAGGTGGCA
AAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAAGAGGAC
GAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGCTCTTGA
AACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAGAAAACC
GACAATCTGATCAAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAA
CGTTGACCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCA
GCAAAGACGTAAGGAAAGCTTTGACAGAAGAACGTCCAGGGACGAGCAAC
TCAACGGTCACCGCTCTAATCTCAGTGAAATGGAAGGAATTGGGTGAAGA
AGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATGGAAGCATACA
AGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGCTACGACCAGT
AGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAATGTTCAAGTCC
TGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTGAACTCAAAGT
GATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTACATTTTAATT
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protein sequence of BnaA01T0055800WE

>BnaA01T0055800WE-P ID=BnaA01T0055800WE-P|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=polypeptide|length=461bp
MATSADPAPTKKSRNSRKALKQKNEIATTETPPSPVSAKAKSAKSFEKDL
MEMQAMMEKMKIEKDKTEELLKEKDEILRRKEEELVTRDAEQEKLKTELK
KLQKMKEFKPNMTFACGQSLTQAEQEKVNKKKKKKKDCPETKRPSSSYIL
WCKEQRDEVKKQNPEADFKETANILGAKWKSLSAEEKKPYEERYKVEKEA
YLQVIAKEKREREAMKLLDDEQKQKTAMDLLDQYLQFVQEGEQDIKKKSK
KEKDPLKPKHPISAFLVYANERRAALREENKNVVEVAKMTGEEWKKLSDK
EKAPYEEVAKKNKETYLQAMEEYKRTKEEEAMSQKKEEEELLKLHKQEAL
QLLKKKEKTDNLIKKEKETKKKKNENVDPNKPKKPASSFILFSKDVRKAL
TEERPGTSNSTVTALISVKWKELGEEEKQSYNNKAAKLMEAYKKELEDYN
KKSAAATTSS.
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mRNA from alignment at westarv0_A01:3924721..3926979+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=2259bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA CCTAACATGGTATACCTATCCTCTAGATCTAGATCTAGCCTTTACGTTTT CGCTTCGGTTAGGTTTTGTGATTAGATTAGAGATTGATTCTACAAATACG ATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCTAAAAATA CGATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCAAGATT GTTCTGTGTTGTTCTCTCAGACGTTTGCTTGTGGTCAATCTCTCACACAA GCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCC GGAGACGAAGAGACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAA GGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCG AACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCC TTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTG CCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAG AAGCAGAAGACTGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCA GGAAGGTGAACAGGACATCAAGAAGAAGAGCAAGTGAGATATACCTACTG ATGAATATACCAATTGCTCATCAAATGGTTGAACTGATTAGAGATGTTGT TTGGTTTGCAGGAAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATC TGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGA ACAAGAACGTTGTAGAGGTATATCTCAAGTACTTTCTCTCAAGATCCATT TTTTTTGCTAAATGTTGAATTTAACTTGTGGAGCGGTGGTTATAGGTCGC AAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAAGAAAAAGCAC CCTATGAAGAGGTTTGTGTTTCTTATATATATATGTTTGCATTCATAGCT ATATAAAGACTTGGAGAGTGAATGAATTTTTGAGGTGTGATATTAAACAG GTGGCAAAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAA GAGGACGAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGC TCTTGAAACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAG AAAACCGACAATCTGATCAAGGTCATTCACTCACTCATACTTTTCCTTGT CTCGCCTAAATGAATTTACAACTCAGAGACTAATGGTATCAAGATAATTT ATATTGCAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAACGTTGA CCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCAGGTACC AACTTAAACTAAATGTGACTCAAGAGTATCCTGAACTTAATGCATTTCTA ACTGTTTAAAAAAAAAACTTATGTCCACAGCAAAGACGTAAGGAAAGCTT TGACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATC TCAGTGAAATGGAAGGTATGTTAATTCACAACTCTACCTTTAATAACTCA TTTGCTATAAACATATATCTCTCGTCTAAGTAAAATTACATTGCAGGAAT TGGGTGAAGAAGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATG GAAGCATACAAGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGC TACGACCAGTAGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAAT GTTCAAGTCCTGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTG AACTCAAAGTGATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTAC ATTTTAATT
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Coding sequence (CDS) from alignment at westarv0_A01:3924721..3926979+

>BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=CDS|length=1383bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
ATGGCCACCAGCGCAGATCCAGCTCCGACGAAGAAATCGAGGAACAGCCG
CAAGGCGTTGAAGCAGAAGAACGAGATCGCGACGACGGAGACTCCGCCGT
CCCCAGTCTCCGCCAAGGCGAAATCGGCGAAGTCGTTCGAGAAAGATCTG
ATGGAGATGCAGGCGATGATGGAGAAGATGAAGATCGAGAAGGATAAGAC
GGAGGAGTTGCTTAAGGAGAAGGACGAGATTCTGAGGAGGAAGGAGGAGG
AGCTTGTGACGAGAGACGCTGAGCAGGAGAAGCTCAAGACGGAGCTCAAG
AAGCTTCAGAAGATGAAGGAGTTCAAACCTAACATGACGTTTGCTTGTGG
TCAATCTCTCACACAAGCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGA
AGAAGAAGGATTGTCCGGAGACGAAGAGACCGTCGTCATCATACATACTG
TGGTGCAAGGAGCAAAGGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGA
CTTCAAGGAGACTGCGAACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTG
CGGAAGAGAAGAAGCCTTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCT
TACCTCCAGGTGATTGCCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCT
TCTGGATGATGAGCAGAAGCAGAAGACTGCTATGGATTTGCTTGATCAGT
ATCTCCAGTTTGTGCAGGAAGGTGAACAGGACATCAAGAAGAAGAGCAAG
AAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATCTGCCTTCCTGGT
TTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGAACAAGAACGTTG
TAGAGGTCGCAAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAA
GAAAAAGCACCCTATGAAGAGGTGGCAAAGAAGAACAAGGAGACATACCT
GCAAGCAATGGAGGAGTACAAGAGGACGAAGGAAGAAGAGGCCATGAGCC
AGAAGAAAGAAGAAGAGGAGCTCTTGAAACTCCACAAACAGGAAGCTCTC
CAACTGCTTAAGAAGAAGGAGAAAACCGACAATCTGATCAAGAAGGAGAA
AGAGACCAAGAAGAAGAAGAACGAAAACGTTGACCCAAACAAACCCAAGA
AGCCTGCTTCCTCATTCATCCTCTTCAGCAAAGACGTAAGGAAAGCTTTG
ACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATCTC
AGTGAAATGGAAGGAATTGGGTGAAGAAGAAAAGCAAAGTTACAACAACA
AAGCAGCAAAGTTGATGGAAGCATACAAGAAGGAACTTGAAGATTACAAC
AAGAAGAGTGCTGCGGCTACGACCAGTAGTTAG
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