Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0055800WE | BnaA01G0055800WE | Brassica napus Westar | gene | westarv0_A01 3924721..3926979 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0055800WE.utr5p1 | BnaA01T0055800WE.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 3924721..3924743 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0055800WE.exon1 | BnaA01T0055800WE.exon1 | Brassica napus Westar | exon | westarv0_A01 3924721..3925079 + |
| BnaA01T0055800WE.exon2 | BnaA01T0055800WE.exon2 | Brassica napus Westar | exon | westarv0_A01 3925291..3925703 + |
| BnaA01T0055800WE.exon3 | BnaA01T0055800WE.exon3 | Brassica napus Westar | exon | westarv0_A01 3925782..3925887 + |
| BnaA01T0055800WE.exon4 | BnaA01T0055800WE.exon4 | Brassica napus Westar | exon | westarv0_A01 3925966..3926031 + |
| BnaA01T0055800WE.exon5 | BnaA01T0055800WE.exon5 | Brassica napus Westar | exon | westarv0_A01 3926121..3926291 + |
| BnaA01T0055800WE.exon6 | BnaA01T0055800WE.exon6 | Brassica napus Westar | exon | westarv0_A01 3926380..3926465 + |
| BnaA01T0055800WE.exon7 | BnaA01T0055800WE.exon7 | Brassica napus Westar | exon | westarv0_A01 3926551..3926635 + |
| BnaA01T0055800WE.exon8 | BnaA01T0055800WE.exon8 | Brassica napus Westar | exon | westarv0_A01 3926717..3926979 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0055800WE | cds.BnaA01T0055800WE | Brassica napus Westar | CDS | westarv0_A01 3924744..3925079 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0055800WE.utr3p1 | BnaA01T0055800WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 3926837..3926979 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=1549bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGACGTTTGCTTGTGGTCAATCTCTCACACAAGCTGAGCAAGA
AAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCCGGAGACGAAGA
GACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAAGGGATGAAGTG
AAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCGAACATTCTTGG
CGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCCTTACGAGGAGA
GGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTGCCAAGGAGAAG
CGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAGAAGCAGAAGAC
TGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCAGGAAGGTGAAC
AGGACATCAAGAAGAAGAGCAAGAAGGAGAAGGATCCTCTGAAGCCAAAG
CATCCCATATCTGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTT
ACGCGAAGAGAACAAGAACGTTGTAGAGGTCGCAAAGATGACCGGTGAAG
AGTGGAAGAAGCTGTCGGATAAAGAAAAAGCACCCTATGAAGAGGTGGCA
AAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAAGAGGAC
GAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGCTCTTGA
AACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAGAAAACC
GACAATCTGATCAAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAA
CGTTGACCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCA
GCAAAGACGTAAGGAAAGCTTTGACAGAAGAACGTCCAGGGACGAGCAAC
TCAACGGTCACCGCTCTAATCTCAGTGAAATGGAAGGAATTGGGTGAAGA
AGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATGGAAGCATACA
AGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGCTACGACCAGT
AGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAATGTTCAAGTCC
TGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTGAACTCAAAGT
GATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTACATTTTAATT back to topprotein sequence of BnaA01T0055800WE >BnaA01T0055800WE-P ID=BnaA01T0055800WE-P|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=polypeptide|length=461bp
MATSADPAPTKKSRNSRKALKQKNEIATTETPPSPVSAKAKSAKSFEKDL
MEMQAMMEKMKIEKDKTEELLKEKDEILRRKEEELVTRDAEQEKLKTELK
KLQKMKEFKPNMTFACGQSLTQAEQEKVNKKKKKKKDCPETKRPSSSYIL
WCKEQRDEVKKQNPEADFKETANILGAKWKSLSAEEKKPYEERYKVEKEA
YLQVIAKEKREREAMKLLDDEQKQKTAMDLLDQYLQFVQEGEQDIKKKSK
KEKDPLKPKHPISAFLVYANERRAALREENKNVVEVAKMTGEEWKKLSDK
EKAPYEEVAKKNKETYLQAMEEYKRTKEEEAMSQKKEEEELLKLHKQEAL
QLLKKKEKTDNLIKKEKETKKKKNENVDPNKPKKPASSFILFSKDVRKAL
TEERPGTSNSTVTALISVKWKELGEEEKQSYNNKAAKLMEAYKKELEDYN
KKSAAATTSS. back to topmRNA from alignment at westarv0_A01:3924721..3926979+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=mRNA|length=2259bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
CCTCCTTCTCTCCGACTCGAGACATGGCCACCAGCGCAGATCCAGCTCCG
ACGAAGAAATCGAGGAACAGCCGCAAGGCGTTGAAGCAGAAGAACGAGAT
CGCGACGACGGAGACTCCGCCGTCCCCAGTCTCCGCCAAGGCGAAATCGG
CGAAGTCGTTCGAGAAAGATCTGATGGAGATGCAGGCGATGATGGAGAAG
ATGAAGATCGAGAAGGATAAGACGGAGGAGTTGCTTAAGGAGAAGGACGA
GATTCTGAGGAGGAAGGAGGAGGAGCTTGTGACGAGAGACGCTGAGCAGG
AGAAGCTCAAGACGGAGCTCAAGAAGCTTCAGAAGATGAAGGAGTTCAAA
CCTAACATGGTATACCTATCCTCTAGATCTAGATCTAGCCTTTACGTTTT
CGCTTCGGTTAGGTTTTGTGATTAGATTAGAGATTGATTCTACAAATACG
ATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCTAAAAATA
CGATTGAACATTTGAGATCTGAGATCATTTATGATCATTGATTCAAGATT
GTTCTGTGTTGTTCTCTCAGACGTTTGCTTGTGGTCAATCTCTCACACAA
GCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGAAGAAGAAGGATTGTCC
GGAGACGAAGAGACCGTCGTCATCATACATACTGTGGTGCAAGGAGCAAA
GGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGACTTCAAGGAGACTGCG
AACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTGCGGAAGAGAAGAAGCC
TTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCTTACCTCCAGGTGATTG
CCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCTTCTGGATGATGAGCAG
AAGCAGAAGACTGCTATGGATTTGCTTGATCAGTATCTCCAGTTTGTGCA
GGAAGGTGAACAGGACATCAAGAAGAAGAGCAAGTGAGATATACCTACTG
ATGAATATACCAATTGCTCATCAAATGGTTGAACTGATTAGAGATGTTGT
TTGGTTTGCAGGAAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATC
TGCCTTCCTGGTTTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGA
ACAAGAACGTTGTAGAGGTATATCTCAAGTACTTTCTCTCAAGATCCATT
TTTTTTGCTAAATGTTGAATTTAACTTGTGGAGCGGTGGTTATAGGTCGC
AAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAAGAAAAAGCAC
CCTATGAAGAGGTTTGTGTTTCTTATATATATATGTTTGCATTCATAGCT
ATATAAAGACTTGGAGAGTGAATGAATTTTTGAGGTGTGATATTAAACAG
GTGGCAAAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAGTACAA
GAGGACGAAGGAAGAAGAGGCCATGAGCCAGAAGAAAGAAGAAGAGGAGC
TCTTGAAACTCCACAAACAGGAAGCTCTCCAACTGCTTAAGAAGAAGGAG
AAAACCGACAATCTGATCAAGGTCATTCACTCACTCATACTTTTCCTTGT
CTCGCCTAAATGAATTTACAACTCAGAGACTAATGGTATCAAGATAATTT
ATATTGCAGAAGGAGAAAGAGACCAAGAAGAAGAAGAACGAAAACGTTGA
CCCAAACAAACCCAAGAAGCCTGCTTCCTCATTCATCCTCTTCAGGTACC
AACTTAAACTAAATGTGACTCAAGAGTATCCTGAACTTAATGCATTTCTA
ACTGTTTAAAAAAAAAACTTATGTCCACAGCAAAGACGTAAGGAAAGCTT
TGACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATC
TCAGTGAAATGGAAGGTATGTTAATTCACAACTCTACCTTTAATAACTCA
TTTGCTATAAACATATATCTCTCGTCTAAGTAAAATTACATTGCAGGAAT
TGGGTGAAGAAGAAAAGCAAAGTTACAACAACAAAGCAGCAAAGTTGATG
GAAGCATACAAGAAGGAACTTGAAGATTACAACAAGAAGAGTGCTGCGGC
TACGACCAGTAGTTAGAAGAATATCTATCTCTCTTTGAAATTGAAATAAT
GTTCAAGTCCTGTTGAACATGTGTCTTTTTATGCATTTTGTTAGAATCTG
AACTCAAAGTGATTTCTATAAAATGATTACTAGGTTTTATTCTCTATTAC
ATTTTAATT back to topCoding sequence (CDS) from alignment at westarv0_A01:3924721..3926979+ >BnaA01T0055800WE ID=BnaA01T0055800WE|Name=BnaA01T0055800WE|organism=Brassica napus Westar|type=CDS|length=1383bp|location=Sequence derived from alignment at westarv0_A01:3924721..3926979+ (Brassica napus Westar)
ATGGCCACCAGCGCAGATCCAGCTCCGACGAAGAAATCGAGGAACAGCCG
CAAGGCGTTGAAGCAGAAGAACGAGATCGCGACGACGGAGACTCCGCCGT
CCCCAGTCTCCGCCAAGGCGAAATCGGCGAAGTCGTTCGAGAAAGATCTG
ATGGAGATGCAGGCGATGATGGAGAAGATGAAGATCGAGAAGGATAAGAC
GGAGGAGTTGCTTAAGGAGAAGGACGAGATTCTGAGGAGGAAGGAGGAGG
AGCTTGTGACGAGAGACGCTGAGCAGGAGAAGCTCAAGACGGAGCTCAAG
AAGCTTCAGAAGATGAAGGAGTTCAAACCTAACATGACGTTTGCTTGTGG
TCAATCTCTCACACAAGCTGAGCAAGAAAAGGTGAACAAGAAGAAGAAGA
AGAAGAAGGATTGTCCGGAGACGAAGAGACCGTCGTCATCATACATACTG
TGGTGCAAGGAGCAAAGGGATGAAGTGAAGAAGCAGAATCCTGAAGCTGA
CTTCAAGGAGACTGCGAACATTCTTGGCGCTAAGTGGAAGTCTCTTAGTG
CGGAAGAGAAGAAGCCTTACGAGGAGAGGTACAAGGTGGAGAAGGAAGCT
TACCTCCAGGTGATTGCCAAGGAGAAGCGGGAGAGAGAGGCCATGAAGCT
TCTGGATGATGAGCAGAAGCAGAAGACTGCTATGGATTTGCTTGATCAGT
ATCTCCAGTTTGTGCAGGAAGGTGAACAGGACATCAAGAAGAAGAGCAAG
AAGGAGAAGGATCCTCTGAAGCCAAAGCATCCCATATCTGCCTTCCTGGT
TTATGCTAACGAGAGGAGAGCTGCTTTACGCGAAGAGAACAAGAACGTTG
TAGAGGTCGCAAAGATGACCGGTGAAGAGTGGAAGAAGCTGTCGGATAAA
GAAAAAGCACCCTATGAAGAGGTGGCAAAGAAGAACAAGGAGACATACCT
GCAAGCAATGGAGGAGTACAAGAGGACGAAGGAAGAAGAGGCCATGAGCC
AGAAGAAAGAAGAAGAGGAGCTCTTGAAACTCCACAAACAGGAAGCTCTC
CAACTGCTTAAGAAGAAGGAGAAAACCGACAATCTGATCAAGAAGGAGAA
AGAGACCAAGAAGAAGAAGAACGAAAACGTTGACCCAAACAAACCCAAGA
AGCCTGCTTCCTCATTCATCCTCTTCAGCAAAGACGTAAGGAAAGCTTTG
ACAGAAGAACGTCCAGGGACGAGCAACTCAACGGTCACCGCTCTAATCTC
AGTGAAATGGAAGGAATTGGGTGAAGAAGAAAAGCAAAGTTACAACAACA
AAGCAGCAAAGTTGATGGAAGCATACAAGAAGGAACTTGAAGATTACAAC
AAGAAGAGTGCTGCGGCTACGACCAGTAGTTAG back to top
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