BnaA01T0054100WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0054100WE
Unique NameBnaA01T0054100WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:3766205..3768589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0054100WEBnaA01G0054100WEBrassica napus Westargenewestarv0_A01 3766205..3768629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0054100WEBnaA01T0054100WE-PBrassica napus Westarpolypeptidewestarv0_A01 3766231..3768391 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0054100WE.utr5p1BnaA01T0054100WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 3766205..3766230 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0054100WE.exon1BnaA01T0054100WE.exon1Brassica napus Westarexonwestarv0_A01 3766205..3766484 +
BnaA01T0054100WE.exon2BnaA01T0054100WE.exon2Brassica napus Westarexonwestarv0_A01 3766693..3767032 +
BnaA01T0054100WE.exon3BnaA01T0054100WE.exon3Brassica napus Westarexonwestarv0_A01 3767278..3767496 +
BnaA01T0054100WE.exon4BnaA01T0054100WE.exon4Brassica napus Westarexonwestarv0_A01 3767634..3767693 +
BnaA01T0054100WE.exon5BnaA01T0054100WE.exon5Brassica napus Westarexonwestarv0_A01 3767809..3767964 +
BnaA01T0054100WE.exon6BnaA01T0054100WE.exon6Brassica napus Westarexonwestarv0_A01 3768058..3768151 +
BnaA01T0054100WE.exon7BnaA01T0054100WE.exon7Brassica napus Westarexonwestarv0_A01 3768240..3768394 +
BnaA01T0054100WE.exon8BnaA01T0054100WE.exon8Brassica napus Westarexonwestarv0_A01 3768425..3768589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0054100WEcds.BnaA01T0054100WEBrassica napus WestarCDSwestarv0_A01 3766231..3766484 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0054100WE.utr3p1BnaA01T0054100WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 3768392..3768394 +
BnaA01T0054100WE.utr3p2BnaA01T0054100WE.utr3p2Brassica napus Westarthree_prime_UTRwestarv0_A01 3768425..3768589 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0054100WE ID=BnaA01T0054100WE|Name=BnaA01T0054100WE|organism=Brassica napus Westar|type=mRNA|length=1469bp|location=Sequence derived from alignment at westarv0_A01:3766205..3768589+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
TCTAAACAGAGAGAAAGAAGTTAGAAATGGAGACCACCCCCATGTGCACT
GAGTGGCAGTTCAGCGGGAGCGAGGCAGCCAAAGAAGCTGCTGCGGCCGC
CCTAGGTGCCTACACCTCTAAACTCATGTCTCTTTGTGATCCTAATGGTA
AGCCCATTTTGCCCCCGAGTAACAAGGCCGTGGAGACCAGCAATTCAGCC
GAAAAAGCTGTTGTTAAAGTTATTCTCTCCGGCACTGGAAACGCCTATGC
TCCTAGCATTGGCCTTCCGCTCGCCAAAAGTGCCGTAGCAGAGTATCTAA
ACAGAGATCTTCCAAAGAAACTAACAGCAGATGACGTGTTTATGACTGTT
GGATGCAAACGAGCAATTGACCTTGCGGTGGATATTCTGGCTAAACCAAA
AGCCAACGTTTTGCTTCCGAGGCCAGGCTTCCCGTGGGATGTAGTACGCT
CCATCTACAAGAAACTCGAGGTCCGTTACTATGATTTCATCCCTGAACAA
AACTTTGAGATCGACTTCGAAAGCGTCAAAAAGGTGACAGACAAGAACAC
GTTTGCTATATTTATCATCAACCCTCACAATCCCAATGGAAACACCTACT
CGGAGGCTCACCTCAAACAGCTCGCTGAATTGGCTAAGGAACTCTCGATT
ATGGTGGTTTCTGATGAAGTTTTTAGATGGACCGTCTTCGGGAATAACCC
TTTTGTTCCGATGGGAAAGTTTTCTTCCATCGTACCAGTGGTTACACTCG
GATCCTTATCTAAGGGATGGAATGTCCCAGGATGGCGAACTGGCTGGCTC
GCGCTGCACGATCTAGACGGTGTCTTCAGAAACACTAAGATATTACAAGC
TGCCCACGAATTTCTCCAGATAAATGCCAAACCTCCGACTGTTATTCAGG
CGGCTATGCCTGACATTTTGGAGAGAACTCCAAAACATTTCTTCCATGAG
AGGGGAAGTTTTCTGAAACATAAAGTAGATATTGGATATTCTAAGGTCAA
GCACATACCTGGCCTCACTTGTTACATGAAACCCGAAGCATGCACCTTTT
TATGGACCAAGTTGGATGTATCGTGCTTTGCTGACATTGTAGACGATCAA
GACTTCTGCAGGAAGCTCGCTATGGAAGAAAATCTCGTCGTTTTGCCAGG
GATTGCATTTAGGCAGAAGAACTGGTTGAGGCATTCTATCGACATGGAGA
CGCCAACAGTTGAGGACGCATTTGAAAGATTGAAGAGCTTCTGTGAACGC
CATTCCGTTGAAGGTGGAGCTTCACTCAAAAACGTCAATGGCGTGAACTA
AAAGGTCAACATGATGATCTTTTCCTAAGTCTATTAAAAATAAATGGGTG
TTTTTGGTAACGTGAGATAAATCATGAACACTTTCGTATTTGTAACAAAT
AAAATTGGTGTACTTATCATCAATCGTAGAATGTTTTCTCATGATGTATC
TACTTTCGAATAATGAAAA
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protein sequence of BnaA01T0054100WE

>BnaA01T0054100WE-P ID=BnaA01T0054100WE-P|Name=BnaA01T0054100WE|organism=Brassica napus Westar|type=polypeptide|length=425bp
METTPMCTEWQFSGSEAAKEAAAAALGAYTSKLMSLCDPNGKPILPPSNK
AVETSNSAEKAVVKVILSGTGNAYAPSIGLPLAKSAVAEYLNRDLPKKLT
ADDVFMTVGCKRAIDLAVDILAKPKANVLLPRPGFPWDVVRSIYKKLEVR
YYDFIPEQNFEIDFESVKKVTDKNTFAIFIINPHNPNGNTYSEAHLKQLA
ELAKELSIMVVSDEVFRWTVFGNNPFVPMGKFSSIVPVVTLGSLSKGWNV
PGWRTGWLALHDLDGVFRNTKILQAAHEFLQINAKPPTVIQAAMPDILER
TPKHFFHERGSFLKHKVDIGYSKVKHIPGLTCYMKPEACTFLWTKLDVSC
FADIVDDQDFCRKLAMEENLVVLPGIAFRQKNWLRHSIDMETPTVEDAFE
RLKSFCERHSVEGGASLKNVNGVN.
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mRNA from alignment at westarv0_A01:3766205..3768589+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0054100WE ID=BnaA01T0054100WE|Name=BnaA01T0054100WE|organism=Brassica napus Westar|type=mRNA|length=2385bp|location=Sequence derived from alignment at westarv0_A01:3766205..3768589+ (Brassica napus Westar)
TCTAAACAGAGAGAAAGAAGTTAGAAATGGAGACCACCCCCATGTGCACT
GAGTGGCAGTTCAGCGGGAGCGAGGCAGCCAAAGAAGCTGCTGCGGCCGC
CCTAGGTGCCTACACCTCTAAACTCATGTCTCTTTGTGATCCTAATGGTA
AGCCCATTTTGCCCCCGAGTAACAAGGCCGTGGAGACCAGCAATTCAGCC
GAAAAAGCTGTTGTTAAAGTTATTCTCTCCGGCACTGGAAACGCCTATGC
TCCTAGCATTGGCCTTCCGCTCGCCAAAAGGTAAAATTTTAAGACTAGTT
TTAATTTAGCCTCACTTATAGTTTTGCACCCTAACTTCATTAGGTCCCTT
ATTATCGTTATTAGGTTACACTTTTGTATCTACGTGAGATTTGTATATAA
GGCAGTAATCTATCAATCTAAAGAATCCTCGTTACGACCACATAAGGGTC
TTGACACAATCATTTTTGCTTTCGTTATTCTTTGTTAGTGCCGTAGCAGA
GTATCTAAACAGAGATCTTCCAAAGAAACTAACAGCAGATGACGTGTTTA
TGACTGTTGGATGCAAACGAGCAATTGACCTTGCGGTGGATATTCTGGCT
AAACCAAAAGCCAACGTTTTGCTTCCGAGGCCAGGCTTCCCGTGGGATGT
AGTACGCTCCATCTACAAGAAACTCGAGGTCCGTTACTATGATTTCATCC
CTGAACAAAACTTTGAGATCGACTTCGAAAGCGTCAAAAAGGTGACAGAC
AAGAACACGTTTGCTATATTTATCATCAACCCTCACAATCCCAATGGAAA
CACCTACTCGGAGGCTCACCTCAAACAGGTACTTATAAATATAGAGACTT
TTTAGTCTTATAATAAACTACTAAACTATTAATTAAAGTATTTCATCTTT
TTCTTTTTCTTTTTTTGGTCAAAATTTCTTTTTTTTCTTCTAAGAATGTA
AATATCATTTCAAAAGATGAAGTTAGGTGTAACATTAAGTTGTTGACAAA
TAGTAGAATCTAAGTATTTCACTTCCCTATGCGGATCATCTAACTTGTTT
CTTGTGTAATTGTTGAACGTCAGCTCGCTGAATTGGCTAAGGAACTCTCG
ATTATGGTGGTTTCTGATGAAGTTTTTAGATGGACCGTCTTCGGGAATAA
CCCTTTTGTTCCGATGGGAAAGTTTTCTTCCATCGTACCAGTGGTTACAC
TCGGATCCTTATCTAAGGGATGGAATGTCCCAGGATGGCGAACTGGCTGG
CTCGCGCTGCACGATCTAGACGGTGTCTTCAGAAACACTAAGGTCCCATC
ATTTTTAACACTATTTCATACCAATAAACACATCATTCTAAGTTTCGGCC
CATATACTAGATTTGATAATTAAACCTGTACATTGATTGTCTTTAATTTT
TGGTCTAACCCTTTTGTTATTGTGGACAGATATTACAAGCTGCCCACGAA
TTTCTCCAGATAAATGCCAAACCTCCGACTGTTATTCAGGTAAGGACGGT
CTGATGTCGGTAAACTTGGGTTACTCTCTTACGCTTATTGTACGAGTAAA
CAAAATATTTAACTACGCGGTACGTATCTTATTCAATGTTAATGCCATAT
ATAGGCGGCTATGCCTGACATTTTGGAGAGAACTCCAAAACATTTCTTCC
ATGAGAGGGGAAGTTTTCTGAAACATAAAGTAGATATTGGATATTCTAAG
GTCAAGCACATACCTGGCCTCACTTGTTACATGAAACCCGAAGCATGCAC
CTTTTTATGGGTATTCTATTAGTATTACTATTTTTCTTAACACAGTATTT
ATCTTCTTTTATTTTGAGATACGACAATCTTGACATTGAACATTATTACG
CAGACCAAGTTGGATGTATCGTGCTTTGCTGACATTGTAGACGATCAAGA
CTTCTGCAGGAAGCTCGCTATGGAAGAAAATCTCGTCGTTTTGCCAGGTG
CTAATTTTTCAAATCCCTTTGCATAATGTATAAAACAAAGTTTTTTCATG
TTTTAACAGTTCAACATGCGTGTTGAATTGGTTAGGGATTGCATTTAGGC
AGAAGAACTGGTTGAGGCATTCTATCGACATGGAGACGCCAACAGTTGAG
GACGCATTTGAAAGATTGAAGAGCTTCTGTGAACGCCATTCCGTTGAAGG
TGGAGCTTCACTCAAAAACGTCAATGGCGTGAACTAAAAGGTCAACATGA
TTTAGTTTACAAAAAAAAAGGTCAACATGATGATCTTTTCCTAAGTCTAT
TAAAAATAAATGGGTGTTTTTGGTAACGTGAGATAAATCATGAACACTTT
CGTATTTGTAACAAATAAAATTGGTGTACTTATCATCAATCGTAGAATGT
TTTCTCATGATGTATCTACTTTCGAATAATGAAAA
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Coding sequence (CDS) from alignment at westarv0_A01:3766205..3768589+

>BnaA01T0054100WE ID=BnaA01T0054100WE|Name=BnaA01T0054100WE|organism=Brassica napus Westar|type=CDS|length=1275bp|location=Sequence derived from alignment at westarv0_A01:3766205..3768589+ (Brassica napus Westar)
ATGGAGACCACCCCCATGTGCACTGAGTGGCAGTTCAGCGGGAGCGAGGC
AGCCAAAGAAGCTGCTGCGGCCGCCCTAGGTGCCTACACCTCTAAACTCA
TGTCTCTTTGTGATCCTAATGGTAAGCCCATTTTGCCCCCGAGTAACAAG
GCCGTGGAGACCAGCAATTCAGCCGAAAAAGCTGTTGTTAAAGTTATTCT
CTCCGGCACTGGAAACGCCTATGCTCCTAGCATTGGCCTTCCGCTCGCCA
AAAGTGCCGTAGCAGAGTATCTAAACAGAGATCTTCCAAAGAAACTAACA
GCAGATGACGTGTTTATGACTGTTGGATGCAAACGAGCAATTGACCTTGC
GGTGGATATTCTGGCTAAACCAAAAGCCAACGTTTTGCTTCCGAGGCCAG
GCTTCCCGTGGGATGTAGTACGCTCCATCTACAAGAAACTCGAGGTCCGT
TACTATGATTTCATCCCTGAACAAAACTTTGAGATCGACTTCGAAAGCGT
CAAAAAGGTGACAGACAAGAACACGTTTGCTATATTTATCATCAACCCTC
ACAATCCCAATGGAAACACCTACTCGGAGGCTCACCTCAAACAGCTCGCT
GAATTGGCTAAGGAACTCTCGATTATGGTGGTTTCTGATGAAGTTTTTAG
ATGGACCGTCTTCGGGAATAACCCTTTTGTTCCGATGGGAAAGTTTTCTT
CCATCGTACCAGTGGTTACACTCGGATCCTTATCTAAGGGATGGAATGTC
CCAGGATGGCGAACTGGCTGGCTCGCGCTGCACGATCTAGACGGTGTCTT
CAGAAACACTAAGATATTACAAGCTGCCCACGAATTTCTCCAGATAAATG
CCAAACCTCCGACTGTTATTCAGGCGGCTATGCCTGACATTTTGGAGAGA
ACTCCAAAACATTTCTTCCATGAGAGGGGAAGTTTTCTGAAACATAAAGT
AGATATTGGATATTCTAAGGTCAAGCACATACCTGGCCTCACTTGTTACA
TGAAACCCGAAGCATGCACCTTTTTATGGACCAAGTTGGATGTATCGTGC
TTTGCTGACATTGTAGACGATCAAGACTTCTGCAGGAAGCTCGCTATGGA
AGAAAATCTCGTCGTTTTGCCAGGGATTGCATTTAGGCAGAAGAACTGGT
TGAGGCATTCTATCGACATGGAGACGCCAACAGTTGAGGACGCATTTGAA
AGATTGAAGAGCTTCTGTGAACGCCATTCCGTTGAAGGTGGAGCTTCACT
CAAAAACGTCAATGGCGTGAACTAA
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