BnaA01T0046800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0046800WE
Unique NameBnaA01T0046800WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:2951276..2952426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0046800WEBnaA01G0046800WEBrassica napus Westargenewestarv0_A01 2951276..2952426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0046800WEBnaA01T0046800WE-PBrassica napus Westarpolypeptidewestarv0_A01 2951276..2952426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0046800WE.exon4BnaA01T0046800WE.exon4Brassica napus Westarexonwestarv0_A01 2951276..2951602 -
BnaA01T0046800WE.exon3BnaA01T0046800WE.exon3Brassica napus Westarexonwestarv0_A01 2951686..2951853 -
BnaA01T0046800WE.exon2BnaA01T0046800WE.exon2Brassica napus Westarexonwestarv0_A01 2952033..2952206 -
BnaA01T0046800WE.exon1BnaA01T0046800WE.exon1Brassica napus Westarexonwestarv0_A01 2952289..2952426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0046800WEcds.BnaA01T0046800WEBrassica napus WestarCDSwestarv0_A01 2952289..2952426 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0046800WE ID=BnaA01T0046800WE|Name=BnaA01T0046800WE|organism=Brassica napus Westar|type=mRNA|length=807bp|location=Sequence derived from alignment at westarv0_A01:2951276..2952426- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTAGTTTGTCGGCGAGTCTGCTGTTACCGACAAAGCTGAAACCAGC
TTATTCCGACAACCGAAGTAACAGCAACAGCTCACTCTTTCTCGCCAATA
GAAGACGACCCAAGAGGAAGAACCAATCAATTGTTCCCATGGCAAGATTG
TTTGGACCGGCTATTTTCGAATCATCCAAGTTGAAAGTATTGTTTTTAGG
GGTTGACGAGAAGAAGCATCCATTAACGCTTCCAAGAACTTACACCCTCA
CTCACAGTGACATTACTGCTAAATTAACTTTAGCTATTTCGAATTCCATT
AACAATTCTCAGTTGCAAGGATGGGCAAATAGGTTATACCGAGATGAAGT
GGTAGCAGAGTGGAAGAAAGTGAAAGGGAACATGTCGCTTCACGTCCACT
GTCACATTAGCGGTGGCCATTTCCTTTTAGATCTATTCGCAAAGTTTAGA
TATTACATCTTCTGCAAAGAACTACCAGTGGTGTTGAAGGCTTTTGTGCA
TGGAGATGTGAACTTGTTGAACCACCATCCTGAGTTGCAAGAAGCTCTTG
TTTATGTTTATTTCCACTCCAACGTCAATGAGTTTAACAGAGTCGAGTGT
TGGGGTCCTCTTTGGGAAGCTACTTCTCCTGATGGTCACAGAACTCAAAC
TCTCCCTGAGAAACAGTGCGTGGATGAATGCAGCTGTTGTTTCCCACCGG
TTAGCTCGATTCCGTGGTCTCATAGTCTTAGCAACGAAGGTGTTGATAGC
TACTCTGGGACTCAGGGAGAGGGAATGTCTACTCCTAGTCCAGAGAAACT
CTATTGA
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protein sequence of BnaA01T0046800WE

>BnaA01T0046800WE-P ID=BnaA01T0046800WE-P|Name=BnaA01T0046800WE|organism=Brassica napus Westar|type=polypeptide|length=269bp
MCSLSASLLLPTKLKPAYSDNRSNSNSSLFLANRRRPKRKNQSIVPMARL
FGPAIFESSKLKVLFLGVDEKKHPLTLPRTYTLTHSDITAKLTLAISNSI
NNSQLQGWANRLYRDEVVAEWKKVKGNMSLHVHCHISGGHFLLDLFAKFR
YYIFCKELPVVLKAFVHGDVNLLNHHPELQEALVYVYFHSNVNEFNRVEC
WGPLWEATSPDGHRTQTLPEKQCVDECSCCFPPVSSIPWSHSLSNEGVDS
YSGTQGEGMSTPSPEKLY.
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mRNA from alignment at westarv0_A01:2951276..2952426-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0046800WE ID=BnaA01T0046800WE|Name=BnaA01T0046800WE|organism=Brassica napus Westar|type=mRNA|length=1151bp|location=Sequence derived from alignment at westarv0_A01:2951276..2952426- (Brassica napus Westar)
ATGTGTAGTTTGTCGGCGAGTCTGCTGTTACCGACAAAGCTGAAACCAGC
TTATTCCGACAACCGAAGTAACAGCAACAGCTCACTCTTTCTCGCCAATA
GAAGACGACCCAAGAGGAAGAACCAATCAATTGTTCCCGTAAGAGTTTTT
TTTTCATTTGGGTCTCGTCTCGTCATTTGGGTCTCGTCTTGTAATTGTTT
CGGTTTTGGATTTGGTGCAGATGGCAAGATTGTTTGGACCGGCTATTTTC
GAATCATCCAAGTTGAAAGTATTGTTTTTAGGGGTTGACGAGAAGAAGCA
TCCATTAACGCTTCCAAGAACTTACACCCTCACTCACAGTGACATTACTG
CTAAATTAACTTTAGCTATTTCGAATTCCATTAACAATTCTCAGGTAAAA
ATACATTTCTCTGCTCCTAACATTTTAATAGACATATAAAGCCTAAGTAT
GTATCTGCATCTGCTCATATGGGTAACACTGTCTTGTATCTATATATCTT
TTGGTAAAACAATCCTGAAACTACCATTGAGAGGGTTTAGTCAACGCTGA
TGTGTGGTATATGTTTTATGTAGTTGCAAGGATGGGCAAATAGGTTATAC
CGAGATGAAGTGGTAGCAGAGTGGAAGAAAGTGAAAGGGAACATGTCGCT
TCACGTCCACTGTCACATTAGCGGTGGCCATTTCCTTTTAGATCTATTCG
CAAAGTTTAGATATTACATCTTCTGCAAAGAACTACCAGTGGTAAATTTC
CAAACATCAACTCTTTACTTTATTGGTTTCATGTATACAAAAATGTTGAT
CACTATTGATAATATGTATTTTAGGTGTTGAAGGCTTTTGTGCATGGAGA
TGTGAACTTGTTGAACCACCATCCTGAGTTGCAAGAAGCTCTTGTTTATG
TTTATTTCCACTCCAACGTCAATGAGTTTAACAGAGTCGAGTGTTGGGGT
CCTCTTTGGGAAGCTACTTCTCCTGATGGTCACAGAACTCAAACTCTCCC
TGAGAAACAGTGCGTGGATGAATGCAGCTGTTGTTTCCCACCGGTTAGCT
CGATTCCGTGGTCTCATAGTCTTAGCAACGAAGGTGTTGATAGCTACTCT
GGGACTCAGGGAGAGGGAATGTCTACTCCTAGTCCAGAGAAACTCTATTG
A
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Coding sequence (CDS) from alignment at westarv0_A01:2951276..2952426-

>BnaA01T0046800WE ID=BnaA01T0046800WE|Name=BnaA01T0046800WE|organism=Brassica napus Westar|type=CDS|length=807bp|location=Sequence derived from alignment at westarv0_A01:2951276..2952426- (Brassica napus Westar)
ATGTGTAGTTTGTCGGCGAGTCTGCTGTTACCGACAAAGCTGAAACCAGC
TTATTCCGACAACCGAAGTAACAGCAACAGCTCACTCTTTCTCGCCAATA
GAAGACGACCCAAGAGGAAGAACCAATCAATTGTTCCCATGGCAAGATTG
TTTGGACCGGCTATTTTCGAATCATCCAAGTTGAAAGTATTGTTTTTAGG
GGTTGACGAGAAGAAGCATCCATTAACGCTTCCAAGAACTTACACCCTCA
CTCACAGTGACATTACTGCTAAATTAACTTTAGCTATTTCGAATTCCATT
AACAATTCTCAGTTGCAAGGATGGGCAAATAGGTTATACCGAGATGAAGT
GGTAGCAGAGTGGAAGAAAGTGAAAGGGAACATGTCGCTTCACGTCCACT
GTCACATTAGCGGTGGCCATTTCCTTTTAGATCTATTCGCAAAGTTTAGA
TATTACATCTTCTGCAAAGAACTACCAGTGGTGTTGAAGGCTTTTGTGCA
TGGAGATGTGAACTTGTTGAACCACCATCCTGAGTTGCAAGAAGCTCTTG
TTTATGTTTATTTCCACTCCAACGTCAATGAGTTTAACAGAGTCGAGTGT
TGGGGTCCTCTTTGGGAAGCTACTTCTCCTGATGGTCACAGAACTCAAAC
TCTCCCTGAGAAACAGTGCGTGGATGAATGCAGCTGTTGTTTCCCACCGG
TTAGCTCGATTCCGTGGTCTCATAGTCTTAGCAACGAAGGTGTTGATAGC
TACTCTGGGACTCAGGGAGAGGGAATGTCTACTCCTAGTCCAGAGAAACT
CTATTGA
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