BnaA01T0046000WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0046000WE
Unique NameBnaA01T0046000WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:2918979..2921043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0046000WEBnaA01G0046000WEBrassica napus Westargenewestarv0_A01 2918979..2921043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0046000WEBnaA01T0046000WE-PBrassica napus Westarpolypeptidewestarv0_A01 2918979..2921043 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0046000WE.exon1BnaA01T0046000WE.exon1Brassica napus Westarexonwestarv0_A01 2918979..2919028 +
BnaA01T0046000WE.exon2BnaA01T0046000WE.exon2Brassica napus Westarexonwestarv0_A01 2919264..2919442 +
BnaA01T0046000WE.exon3BnaA01T0046000WE.exon3Brassica napus Westarexonwestarv0_A01 2919745..2919930 +
BnaA01T0046000WE.exon4BnaA01T0046000WE.exon4Brassica napus Westarexonwestarv0_A01 2920018..2920159 +
BnaA01T0046000WE.exon5BnaA01T0046000WE.exon5Brassica napus Westarexonwestarv0_A01 2920613..2920845 +
BnaA01T0046000WE.exon6BnaA01T0046000WE.exon6Brassica napus Westarexonwestarv0_A01 2921015..2921043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0046000WEcds.BnaA01T0046000WEBrassica napus WestarCDSwestarv0_A01 2918979..2919028 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0046000WE ID=BnaA01T0046000WE|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=mRNA|length=819bp|location=Sequence derived from alignment at westarv0_A01:2918979..2921043+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATACCTCACAGACTCAGGCCTAATATTTCTAATCAAACTTTTTTG
TGTGGTTTTTGTCAAGCCGGAGCCAAAGCGCCAGACATATCCATGCCTTG
GACAAGGCCATCAAACTTCACGTCCTGCCGGAGAAACACCTCATGACACT
GCCAGAGAGTTGGAACCATCACGCGCCTTGGAGGAAGACGATGGTAATGG
AGAGTCAAACGCAAACACTGGTGGCTTTGGGGAGCAGATTCAGATCCTTG
CAGTTGCATGCTTATCTGAGAGTAAAGGGGACGCCGAGATTATCACCCTT
TTTAAAGTTGCTGAGGTGATGAACAAAACTTTACAGAGAAATCTCTCTGA
CAATGGGAGTACACCATCAGGGGATGGGGAATTGAGCCCTGATGGTCAGT
TTGCAACTCAGAACGAAGAACATAAGACTTCCTTTCCAGGTTTCAGAAGT
CTCATTTCTTTGTTAGGATCGCAGAGTCTGGTGAGCCGCTTTGGTCAAAG
AAACCTCTGTGTTGGGAGATACAAAGCTAGTGGAAAAGCGGGAAAAAGAG
ACCTTGTAAGCTACTCCATGTTCGCTCTGCCGGCGCCGAACACTGCACCA
GTTACTGGACCCGTAAAAACTGAAAGCTCCAAACCATCATTTGACCTTGA
AGACTGGAACTGTTACTCAGGTCAAACATTATGGAACGGTCACAAGTCTG
GGACTGAAGAGCTCTTATCTTTCCGGGGTGTCCCTTTGGAGCGGGATAAA
TTCTCTGTTCGTTGTGGACTTGAAGGCATATGCATTCCTGGTTCAATCTT
GACGGACAAGAGGAAATAG
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protein sequence of BnaA01T0046000WE

>BnaA01T0046000WE-P ID=BnaA01T0046000WE-P|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=polypeptide|length=273bp
MKYLTDSGLIFLIKLFCVVFVKPEPKRQTYPCLGQGHQTSRPAGETPHDT
ARELEPSRALEEDDGNGESNANTGGFGEQIQILAVACLSESKGDAEIITL
FKVAEVMNKTLQRNLSDNGSTPSGDGELSPDGQFATQNEEHKTSFPGFRS
LISLLGSQSLVSRFGQRNLCVGRYKASGKAGKRDLVSYSMFALPAPNTAP
VTGPVKTESSKPSFDLEDWNCYSGQTLWNGHKSGTEELLSFRGVPLERDK
FSVRCGLEGICIPGSILTDKRK.
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mRNA from alignment at westarv0_A01:2918979..2921043+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0046000WE ID=BnaA01T0046000WE|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=mRNA|length=2065bp|location=Sequence derived from alignment at westarv0_A01:2918979..2921043+ (Brassica napus Westar)
ATGAAATACCTCACAGACTCAGGCCTAATATTTCTAATCAAACTTTTTTG
GTATTTTGTGGTAGTTATCATTTTTGATTTCCATTCCTCTGTCTATCTCC
TCTCTTCAAGTATATAATACCTTCCAACTCATACATAGATGTTTGTCAAA
GAATATACCGTCTCTGCTTAGGCGTGAGTCTCGATTTCGTTATCAGTAAC
TGTTTTATTGTTTTCGTTGTGAGACGAAGAAAGTGGTAGGAAGTATTGAA
ATACTAAAAATTTTTTACTTTTGTTTTAAAATTAGTGTGGTTTTTGTCAA
GCCGGAGCCAAAGCGCCAGACATATCCATGCCTTGGACAAGGCCATCAAA
CTTCACGTCCTGCCGGAGAAACACCTCATGACACTGCCAGAGAGTTGGAA
CCATCACGCGCCTTGGAGGAAGACGATGGTAATGGAGAGTCAAACGCAAA
CACTGGTGGCTTTGGTATGAGGAGGTTCTAAGATGTGTCTGAGGAAGAAG
GATGGATCTATGTTCCATATAGTATAATATCCAATTTTGAAAGTTTTGAA
GTTTACCTTCTTCTCTACTTAATCTAATGTGGTGGTGATGTCTTCTTATT
ACAGAGGAGATCCCGGATAACTGGTCTGAGTCTGTTGAGATTCAGTCATT
ACGTCTCTGGATCGCTCCTTTGTGTTTACTGGTATATGCTCTGTCTCTCA
GATGTTTCATCATTTAAAACTGATACAAACTGTTGTAACATCAGAGGCAT
TTGTTTCTACTTACAGGGGAGCAGATTCAGATCCTTGCAGTTGCATGCTT
ATCTGAGAGTAAAGGGGACGCCGAGATTATCACCCTTTTTAAAGTTGCTG
AGGTGATGAACAAAACTTTACAGAGAAATCTCTCTGACAATGGGAGTACA
CCATCAGGGGATGGGGAATTGAGCCCTGATGGTCAGTTTGCAACTCAGAA
CGGTGACAGTCCTGGTAAAGAGAGTTTGGATTCACAAAAAGGACGTATCT
AATGGCGAATCAATTTTCAGGATGGAAGATCAATAAGAGAAGAACATAAG
ACTTCCTTTCCAGGTTTCAGAAGTCTCATTTCTTTGTTAGGATCGCAGAG
TCTGGTGAGCCGCTTTGGTCAAAGAAACCTCTGTGTTGGGAGATACAAAG
CTAGTGGAAAAGCGGGAAAAAGAGACCTTGTGTTAGTGCTTTTTTAGATA
GAGGAGAGTTTGATCTTAATGTTGCTGGAGGTGTAGCAAGAAGTAAGGCA
AAATGTTGTGCCTTACCCAATGGAGACACATGATGGTAATTCTTATAAGT
TGTTTTCTTAACCTACTGATTCTCACACAATGCCTTTATTTGGAAGGGCG
AAGGTCTCTTTACAAGTTTATATCGTTGACTGTCCCAAAGAACCAATCAT
TGAGATACTGCAGTTTGAGAAGCATCAAGACATGGACCAACTTTCTGATC
ATGAACACAAGGATCCATATGGGAACCTTTTGAAGCGGTTGATACCGTTG
GATAACACTATTTCTCAGCAACCCCGTTCTTTACCACCTCCTATAAGCTC
TACCCCAGATATCAGCAGCAGTGCACACAAGCCATTACTCTCTTCTGGCT
CAGGATCTCAGCTCTTCTCATTCGTCCATTTTAGAAGCTACTCCATGTTC
GCTCTGCCGGCGCCGAACACTGCACCAGTTACTGGACCCGTAAAAACTGA
AAGCTCCAAACCATCATTTGACCTTGAAGACTGGAACTGTTACTCAGGTC
AAACATTATGGAACGGTCACAAGTCTGGGACTGAAGAGCTCTTATCTTTC
CGGGGTGTCCCTTTGGAGCGGGATAAATTCTCTGTTCGTTGTGGACTTGA
AGGCATATGCATTCCTGGTAAGAAGATGGAGGAAGAAACTTTTGATATCA
ATTCTTTTACTGCTGATTGTAATACAGATAAACATTTAATATAAATAGTT
TTAAATTTTTATAATAAATTCTAATGTATATATGTAACATGGTCATATTT
AATATAATATGGGTATATTTTGTGAACTCTTTGGAGGTTCAATCTTGACG
GACAAGAGGAAATAG
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Coding sequence (CDS) from alignment at westarv0_A01:2918979..2921043+

>BnaA01T0046000WE ID=BnaA01T0046000WE|Name=BnaA01T0046000WE|organism=Brassica napus Westar|type=CDS|length=819bp|location=Sequence derived from alignment at westarv0_A01:2918979..2921043+ (Brassica napus Westar)
ATGAAATACCTCACAGACTCAGGCCTAATATTTCTAATCAAACTTTTTTG
TGTGGTTTTTGTCAAGCCGGAGCCAAAGCGCCAGACATATCCATGCCTTG
GACAAGGCCATCAAACTTCACGTCCTGCCGGAGAAACACCTCATGACACT
GCCAGAGAGTTGGAACCATCACGCGCCTTGGAGGAAGACGATGGTAATGG
AGAGTCAAACGCAAACACTGGTGGCTTTGGGGAGCAGATTCAGATCCTTG
CAGTTGCATGCTTATCTGAGAGTAAAGGGGACGCCGAGATTATCACCCTT
TTTAAAGTTGCTGAGGTGATGAACAAAACTTTACAGAGAAATCTCTCTGA
CAATGGGAGTACACCATCAGGGGATGGGGAATTGAGCCCTGATGGTCAGT
TTGCAACTCAGAACGAAGAACATAAGACTTCCTTTCCAGGTTTCAGAAGT
CTCATTTCTTTGTTAGGATCGCAGAGTCTGGTGAGCCGCTTTGGTCAAAG
AAACCTCTGTGTTGGGAGATACAAAGCTAGTGGAAAAGCGGGAAAAAGAG
ACCTTGTAAGCTACTCCATGTTCGCTCTGCCGGCGCCGAACACTGCACCA
GTTACTGGACCCGTAAAAACTGAAAGCTCCAAACCATCATTTGACCTTGA
AGACTGGAACTGTTACTCAGGTCAAACATTATGGAACGGTCACAAGTCTG
GGACTGAAGAGCTCTTATCTTTCCGGGGTGTCCCTTTGGAGCGGGATAAA
TTCTCTGTTCGTTGTGGACTTGAAGGCATATGCATTCCTGGTTCAATCTT
GACGGACAAGAGGAAATAG
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