BnaA01T0040100WE.1 (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0040100WE.1
Unique NameBnaA01T0040100WE.1
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:2507846..2509617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0040100WEBnaA01G0040100WEBrassica napus Westargenewestarv0_A01 2507846..2509617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0040100WE.1BnaA01T0040100WE.1-PBrassica napus Westarpolypeptidewestarv0_A01 2508027..2509613 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0040100WE.1.exon3BnaA01T0040100WE.1.exon3Brassica napus Westarexonwestarv0_A01 2507846..2509192 -
BnaA01T0040100WE.1.exon2BnaA01T0040100WE.1.exon2Brassica napus Westarexonwestarv0_A01 2509279..2509440 -
BnaA01T0040100WE.1.exon1BnaA01T0040100WE.1.exon1Brassica napus Westarexonwestarv0_A01 2509535..2509617 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0040100WE.1.utr3p1BnaA01T0040100WE.1.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 2507846..2508026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0040100WE.1cds.BnaA01T0040100WE.1Brassica napus WestarCDSwestarv0_A01 2509535..2509613 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0040100WE.1.utr5p1BnaA01T0040100WE.1.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 2509614..2509617 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0040100WE.1 ID=BnaA01T0040100WE.1|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=mRNA|length=1592bp|location=Sequence derived from alignment at westarv0_A01:2507846..2509617- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
TGAAATGGCACTAGCGATCAACGTTTCCTCATCTTCTTCTTCTGCGATCT
CAACCTCTAGCTTCCCTTCCTCAGAGCTCAAAGCTCCACGGATCGGTTCA
CTGAGGTTATCCGATCGTGTCAATGTCTCATCGGCGTCTCTGAGTCTATC
CGGGAAACGATCATCATCGGTGAAGCCTCTGAATGTTCAGTCAATTGCAA
AGGAGTCGTTTGTTCCTTCTCAAGCAGCGTCCATGGTGACTTCTGAGGTT
ACAGAGAAACTAGATGTGGTGGAAGTGGAAGACTTCGAGGAGCTAGCAAA
GAGTCTAGAGACCGCTTCTCCTCTTGAGATCATGGACAAGGCTCTTGAGA
AGTTCGGAAACGACATCGCAATCGCATTTAGTGGAGCAGAAGACGTTGCT
CTCATTGAGTACGCTCACTTAACCGGAAGACCCTTCAGGGTGTTTAGTTT
AGACACAGGGAGATTGAACCCCGAAACATACAGACTCTTCGACACCGTGG
AGAAGCACTACGGTATTCGAATCGAGTACATGTTTCCCGACGCTGTTGAG
GTCCAAGCTTTGGTTAGAAACAAAGGTTTGTTCTCTTTCTACGAAGACGG
TCACCAGGAGTGTTGCCGCATCAGAAAGGTTAGACCATTGAGGCGTGCGT
TGAAGGGCTTACGCGCTTGGATCACCGGACAAAGGAAAGATCAGTCACCA
GGGACGAGATCAGAGATCCCCGTTGTTCAAGTTGATCCGGTGTTTGAAGG
GTTAGACGGTGGAGCTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATG
TCGAAGGGAACGATGTTTGGAACTTCTTGAGGACTATGGATGTGCCCGTG
AACACGCTTCACGCTGCGGGGTATGTTTCTATAGGATGTGAGCCGTGCAC
GAGAGCGGTTTTGCCTGGGCAGCACGAGAGAGAAGGGAGATGGTGGTGGG
AAGACGCTAAGGCTAAAGAGTGTGGACTTCACAAAGGGAACATCAAGGAG
AACAGCAACGGGAACGCTAATGCTAATGTCAATGGGACGTCATCCACGGT
TGCTGATATCTTCAAGAGCGAGAATGTTGTGAGCTTGAGCAGGCAAGGGA
TTGAGAATCTGATGAAGCTGGAGAATCGTAAAGAGGCTTGGATCGTTGTG
CTTTATGCTCCTTGGTGCCCGTTTTGCCAAGCGATGGAAGGTTCGTTTGA
TGAGTTGGCGGATAAGTTGGGCGGGAGTGGCGTGAAGGTGGCGAAGTTTA
GAGCTGATGGTGACCAGAAGGAGTTTGCTAAAAGGGAGTTGCAGCTTGGG
AGCTTCCCGACGATACTAGTGTTCCCGAAGAACTCTTCAAGACCAATCAA
GTATCCGTCAGAGAAGAGAGATGTTGATTCTTTGACATCGTTCTTGAATC
TTGTTCGGTAAAAAGAGCAAAAAATCAGTCGACTTTGCAAAACAAAATCA
TTCAGTCTAGTTCTAGAATGCTAGAACAGATGAAGTAAGAGCTTGAGATT
CTCTATTTGAAAGCTTTTGACTTTTGTATAGTTGTGGTCTGTCCTTTTGT
AAAACATTTGCCTTTGTGATGATATGAGCAAGTTTTCAAACA
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protein sequence of BnaA01T0040100WE.1

>BnaA01T0040100WE.1-P ID=BnaA01T0040100WE.1-P|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=polypeptide|length=469bp
MALAINVSSSSSSAISTSSFPSSELKAPRIGSLRLSDRVNVSSASLSLSG
KRSSSVKPLNVQSIAKESFVPSQAASMVTSEVTEKLDVVEVEDFEELAKS
LETASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLD
TGRLNPETYRLFDTVEKHYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGH
QECCRIRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL
DGGAGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAGYVSIGCEPCTR
AVLPGQHEREGRWWWEDAKAKECGLHKGNIKENSNGNANANVNGTSSTVA
DIFKSENVVSLSRQGIENLMKLENRKEAWIVVLYAPWCPFCQAMEGSFDE
LADKLGGSGVKVAKFRADGDQKEFAKRELQLGSFPTILVFPKNSSRPIKY
PSEKRDVDSLTSFLNLVR.
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mRNA from alignment at westarv0_A01:2507846..2509617-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0040100WE.1 ID=BnaA01T0040100WE.1|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=mRNA|length=1772bp|location=Sequence derived from alignment at westarv0_A01:2507846..2509617- (Brassica napus Westar)
TGAAATGGCACTAGCGATCAACGTTTCCTCATCTTCTTCTTCTGCGATCT
CAACCTCTAGCTTCCCTTCCTCAGAGCTCAAAGGTAATTTTAAAAATTGC
TTGATGGATCTTTGTGAATTGGTTCAAAATTCGAAACTAATTCGAACCCG
GTTTTGTGTTTTATTCCTCAGTTTCAGCTCCACGGATCGGTTCACTGAGG
TTATCCGATCGTGTCAATGTCTCATCGGCGTCTCTGAGTCTATCCGGGAA
ACGATCATCATCGGTGAAGCCTCTGAATGTTCAGTCAATTGCAAAGGAGT
CGTTTGTTCCTTCTCAAGCAGCGTCCATGGTGACTTCTGGTAAGTTCTGT
TTAATTAGGATCTTGGTTTAGTTTTTTTTTGTTGGTTAAGTTTAAGCTAA
TGATCTCGTTGGCTTTACAAAACAGAGGTTACAGAGAAACTAGATGTGGT
GGAAGTGGAAGACTTCGAGGAGCTAGCAAAGAGTCTAGAGACCGCTTCTC
CTCTTGAGATCATGGACAAGGCTCTTGAGAAGTTCGGAAACGACATCGCA
ATCGCATTTAGTGGAGCAGAAGACGTTGCTCTCATTGAGTACGCTCACTT
AACCGGAAGACCCTTCAGGGTGTTTAGTTTAGACACAGGGAGATTGAACC
CCGAAACATACAGACTCTTCGACACCGTGGAGAAGCACTACGGTATTCGA
ATCGAGTACATGTTTCCCGACGCTGTTGAGGTCCAAGCTTTGGTTAGAAA
CAAAGGTTTGTTCTCTTTCTACGAAGACGGTCACCAGGAGTGTTGCCGCA
TCAGAAAGGTTAGACCATTGAGGCGTGCGTTGAAGGGCTTACGCGCTTGG
ATCACCGGACAAAGGAAAGATCAGTCACCAGGGACGAGATCAGAGATCCC
CGTTGTTCAAGTTGATCCGGTGTTTGAAGGGTTAGACGGTGGAGCTGGTA
GTTTGGTGAAGTGGAATCCGGTTGCGAATGTCGAAGGGAACGATGTTTGG
AACTTCTTGAGGACTATGGATGTGCCCGTGAACACGCTTCACGCTGCGGG
GTATGTTTCTATAGGATGTGAGCCGTGCACGAGAGCGGTTTTGCCTGGGC
AGCACGAGAGAGAAGGGAGATGGTGGTGGGAAGACGCTAAGGCTAAAGAG
TGTGGACTTCACAAAGGGAACATCAAGGAGAACAGCAACGGGAACGCTAA
TGCTAATGTCAATGGGACGTCATCCACGGTTGCTGATATCTTCAAGAGCG
AGAATGTTGTGAGCTTGAGCAGGCAAGGGATTGAGAATCTGATGAAGCTG
GAGAATCGTAAAGAGGCTTGGATCGTTGTGCTTTATGCTCCTTGGTGCCC
GTTTTGCCAAGCGATGGAAGGTTCGTTTGATGAGTTGGCGGATAAGTTGG
GCGGGAGTGGCGTGAAGGTGGCGAAGTTTAGAGCTGATGGTGACCAGAAG
GAGTTTGCTAAAAGGGAGTTGCAGCTTGGGAGCTTCCCGACGATACTAGT
GTTCCCGAAGAACTCTTCAAGACCAATCAAGTATCCGTCAGAGAAGAGAG
ATGTTGATTCTTTGACATCGTTCTTGAATCTTGTTCGGTAAAAAGAGCAA
AAAATCAGTCGACTTTGCAAAACAAAATCATTCAGTCTAGTTCTAGAATG
CTAGAACAGATGAAGTAAGAGCTTGAGATTCTCTATTTGAAAGCTTTTGA
CTTTTGTATAGTTGTGGTCTGTCCTTTTGTAAAACATTTGCCTTTGTGAT
GATATGAGCAAGTTTTCAAACA
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Coding sequence (CDS) from alignment at westarv0_A01:2507846..2509617-

>BnaA01T0040100WE.1 ID=BnaA01T0040100WE.1|Name=BnaA01T0040100WE.1|organism=Brassica napus Westar|type=CDS|length=1407bp|location=Sequence derived from alignment at westarv0_A01:2507846..2509617- (Brassica napus Westar)
ATGGCACTAGCGATCAACGTTTCCTCATCTTCTTCTTCTGCGATCTCAAC
CTCTAGCTTCCCTTCCTCAGAGCTCAAAGCTCCACGGATCGGTTCACTGA
GGTTATCCGATCGTGTCAATGTCTCATCGGCGTCTCTGAGTCTATCCGGG
AAACGATCATCATCGGTGAAGCCTCTGAATGTTCAGTCAATTGCAAAGGA
GTCGTTTGTTCCTTCTCAAGCAGCGTCCATGGTGACTTCTGAGGTTACAG
AGAAACTAGATGTGGTGGAAGTGGAAGACTTCGAGGAGCTAGCAAAGAGT
CTAGAGACCGCTTCTCCTCTTGAGATCATGGACAAGGCTCTTGAGAAGTT
CGGAAACGACATCGCAATCGCATTTAGTGGAGCAGAAGACGTTGCTCTCA
TTGAGTACGCTCACTTAACCGGAAGACCCTTCAGGGTGTTTAGTTTAGAC
ACAGGGAGATTGAACCCCGAAACATACAGACTCTTCGACACCGTGGAGAA
GCACTACGGTATTCGAATCGAGTACATGTTTCCCGACGCTGTTGAGGTCC
AAGCTTTGGTTAGAAACAAAGGTTTGTTCTCTTTCTACGAAGACGGTCAC
CAGGAGTGTTGCCGCATCAGAAAGGTTAGACCATTGAGGCGTGCGTTGAA
GGGCTTACGCGCTTGGATCACCGGACAAAGGAAAGATCAGTCACCAGGGA
CGAGATCAGAGATCCCCGTTGTTCAAGTTGATCCGGTGTTTGAAGGGTTA
GACGGTGGAGCTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTCGA
AGGGAACGATGTTTGGAACTTCTTGAGGACTATGGATGTGCCCGTGAACA
CGCTTCACGCTGCGGGGTATGTTTCTATAGGATGTGAGCCGTGCACGAGA
GCGGTTTTGCCTGGGCAGCACGAGAGAGAAGGGAGATGGTGGTGGGAAGA
CGCTAAGGCTAAAGAGTGTGGACTTCACAAAGGGAACATCAAGGAGAACA
GCAACGGGAACGCTAATGCTAATGTCAATGGGACGTCATCCACGGTTGCT
GATATCTTCAAGAGCGAGAATGTTGTGAGCTTGAGCAGGCAAGGGATTGA
GAATCTGATGAAGCTGGAGAATCGTAAAGAGGCTTGGATCGTTGTGCTTT
ATGCTCCTTGGTGCCCGTTTTGCCAAGCGATGGAAGGTTCGTTTGATGAG
TTGGCGGATAAGTTGGGCGGGAGTGGCGTGAAGGTGGCGAAGTTTAGAGC
TGATGGTGACCAGAAGGAGTTTGCTAAAAGGGAGTTGCAGCTTGGGAGCT
TCCCGACGATACTAGTGTTCCCGAAGAACTCTTCAAGACCAATCAAGTAT
CCGTCAGAGAAGAGAGATGTTGATTCTTTGACATCGTTCTTGAATCTTGT
TCGGTAA
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