BnaA01T0037700WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0037700WE
Unique NameBnaA01T0037700WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:2364577..2366045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0037700WEBnaA01G0037700WEBrassica napus Westargenewestarv0_A01 2364577..2366045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0037700WEBnaA01T0037700WE-PBrassica napus Westarpolypeptidewestarv0_A01 2364577..2366045 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0037700WE.exon1BnaA01T0037700WE.exon1Brassica napus Westarexonwestarv0_A01 2364577..2364652 +
BnaA01T0037700WE.exon2BnaA01T0037700WE.exon2Brassica napus Westarexonwestarv0_A01 2365328..2365381 +
BnaA01T0037700WE.exon3BnaA01T0037700WE.exon3Brassica napus Westarexonwestarv0_A01 2365599..2365702 +
BnaA01T0037700WE.exon4BnaA01T0037700WE.exon4Brassica napus Westarexonwestarv0_A01 2365783..2365821 +
BnaA01T0037700WE.exon5BnaA01T0037700WE.exon5Brassica napus Westarexonwestarv0_A01 2365908..2366045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0037700WEcds.BnaA01T0037700WEBrassica napus WestarCDSwestarv0_A01 2364577..2364652 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0037700WE ID=BnaA01T0037700WE|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=mRNA|length=411bp|location=Sequence derived from alignment at westarv0_A01:2364577..2366045+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA
GTACGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAGAAGGGAT
GTGATGCCGACAGTGACTCATGGGAAGATTGTGTATCAGACTGCAGTGAG
ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATATAT
AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT
GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGGATCTGAGGAAGTCGAT
AAGGTGAAACCAAAAAGACCACCGCCACCACCACCAAAGCCACAGCCACC
ACCAAGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGTTCCTGGAA
CTTCAGCTTGA
back to top

protein sequence of BnaA01T0037700WE

>BnaA01T0037700WE-P ID=BnaA01T0037700WE-P|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=polypeptide|length=137bp
MIPQQWTPPCGSQCTHKYAALTQIPWRVFCKKGCDADSDSWEDCVSDCSE
ICYKDPVLKDRQWSAYIDRSPGAASYSEECFHACVAGCGYKFEVGSEEVD
KVKPKRPPPPPPKPQPPPRAKGPKQPPSEEVPGTSA.
back to top

mRNA from alignment at westarv0_A01:2364577..2366045+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0037700WE ID=BnaA01T0037700WE|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=mRNA|length=1469bp|location=Sequence derived from alignment at westarv0_A01:2364577..2366045+ (Brassica napus Westar)
ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA
GTACGCAGCTCTTACGCAGATTCCATGTATGTATTCTCTCTCGATTCGTT
TGATGTTGACTCGATCCGTAATGGCTCACTCAGATTTATCTTCTTTAGCT
CGTTTGTTTTAGTTTCTCGATGATAAGAATCGTGCTTCGGCGAATTTGTA
TTCAAGCAGGTAAAATTGTTGATTGTTGATAAGGTTTCTCGTATTCTGAG
GGTTTCTTCATTTTTATTTGGAATTGAATTGTGAAACTGTGACTTGATAA
TTTAGGTTTCAGTGTTCTTTGTATATAAACCCTAATCTACTGTCAGCGAG
TCTTGCTACTTCACTAAACATTGGGAGAACGATCACTTACTTGCTTGCTT
CTTGGCTAACACTGTAAACTGTAGAAGATGGCATATCTCGCTACCCAATA
TAAGTAACCATAGGAGAAAGAGGAAAATAAGAACAACTGTAGTGAAGATG
CTTTTGCTTCTCTGAACTTATAAACAGATAGATATGTATATGCGTTAGCT
AGTAATAGGGCTTCGTTTTGCTGTTTCTGATACAATCTTTTTTCATTTTC
TTGATCTCTCAATTCCATTTATGATCACAAAAGCTAGATGAATTTCATAT
TTATCTTCCGTGTTGATATATTACACGATTCTAGCAATTTGTTATTTTGT
TGTTCTCTTTGGCTTTATCATCAGTCTAATGATAATAATGAATCCGTGTA
GGGAGAGTGTTCTGCAAGAAGGGATGTGATGCCGACAGTGACTCATGGGA
AGATTGTAAGCATTTCTTTTTAATCACTCAAGTCCATCATGAGATTTGTT
TATGAATTGAGGAGCAGATTCATCTCTCCTCACTCCTCACTCCTCACTAT
ACAACATTACAGAAAATTCTTGTCTCCTACATTGTATATATGTGTGTTCA
TGAAGTATCTCCTCTTCTTCAGGTTTTGATTTTGCAAGTTAATGAATTGG
TGTGATAGTGTTCTCTTTATAGGTGTATCAGACTGCAGTGAGATATGCTA
CAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATATATAGATCGTT
CTCCTGGAGCTGCCAGCTACTCTGAGGTATCCACACTACATTAAAAAGAA
TACCCTTTTCATAAACAGACCGACGTATCTAACTTGTTTTATATTGTAAA
ATTCAGGAATGCTTTCACGCGTGTGTCGCAGGCTGTGGTTACAAGGTTTG
GTACTCTTGTTTCAATCTTCATTTTGATGCCTTTGCAGTATATTTTTCTT
CTTCTTAGCTCGTGTTTGCTGCATCATGCAGTTTGAAGTTGGATCTGAGG
AAGTCGATAAGGTGAAACCAAAAAGACCACCGCCACCACCACCAAAGCCA
CAGCCACCACCAAGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGT
TCCTGGAACTTCAGCTTGA
back to top

Coding sequence (CDS) from alignment at westarv0_A01:2364577..2366045+

>BnaA01T0037700WE ID=BnaA01T0037700WE|Name=BnaA01T0037700WE|organism=Brassica napus Westar|type=CDS|length=411bp|location=Sequence derived from alignment at westarv0_A01:2364577..2366045+ (Brassica napus Westar)
ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA
GTACGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAGAAGGGAT
GTGATGCCGACAGTGACTCATGGGAAGATTGTGTATCAGACTGCAGTGAG
ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATATAT
AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT
GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGGATCTGAGGAAGTCGAT
AAGGTGAAACCAAAAAGACCACCGCCACCACCACCAAAGCCACAGCCACC
ACCAAGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGTTCCTGGAA
CTTCAGCTTGA
back to top