BnaA01T0026500WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0026500WE
Unique NameBnaA01T0026500WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:1749755..1752242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0026500WEBnaA01G0026500WEBrassica napus Westargenewestarv0_A01 1749755..1752242 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0026500WE.exon1BnaA01T0026500WE.exon1Brassica napus Westarexonwestarv0_A01 1749755..1750015 +
BnaA01T0026500WE.exon2BnaA01T0026500WE.exon2Brassica napus Westarexonwestarv0_A01 1750553..1750930 +
BnaA01T0026500WE.exon3BnaA01T0026500WE.exon3Brassica napus Westarexonwestarv0_A01 1751763..1752242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0026500WEcds.BnaA01T0026500WEBrassica napus WestarCDSwestarv0_A01 1749755..1750015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0026500WEBnaA01T0026500WE-PBrassica napus Westarpolypeptidewestarv0_A01 1749755..1752242 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=mRNA|length=1119bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTA
CTGATGAATGCGGCTATGGAGGATAACACGGTGATCATCACGGCGTTAAA
CGAAGCATGGGTCAAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTT
TCAAAGCCGGTATAGGAACAGAGATACTATTGAAACACGTGATCGCGGTT
TGCTTGGATAAGCATGCATACGATCGGTGCATAGAGGTTCATCCTCATTG
CTACTTGATTAACGCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGT
TTATGACGCCTGGTTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTT
AAGGAAGTTCTTGGATTAGGATACAACTTCATCTTCACGGATGCAGATAT
CTTGTGGCTTAGAGACCCATTTCCCCGGTTCTTCCGAGACGCCGACTTTC
AGATAACATGCGATGATTACAATGGAAAGCCATCAGACAAGAATAACCAC
GTGAACTCCGGATTCACATACGTCAAAGCAAACAGCAGAACGTTGAACTT
TTACAAGTTCTGGATCAGATCGAGTCGAAAGTTCCCTGGAAAACACGATC
AAGATGTGTTCAACCTCATAAAAAACAAACAGTTTGTCTTGAAACTTGGA
ATCAACATTAGGTTTCTTGACACGGTTTACTTTGGAGGGTTTTGCCAGCC
GAGCAGGGACATCAACGTGGTTAACACAATGCATGCTAATTGTTGTATTG
GTTTGGACAACAAAGTGAATAATCTAAAGGCTGCTCTTGAAGACTGGAAA
CGATATGTATCGTTGAATACGACCGTGTCTGAGACTAAATGGAATATTCC
ACCGAAGTGTGGTTATTAA
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protein sequence of BnaA01T0026500WE

>BnaA01T0026500WE-P ID=BnaA01T0026500WE-P|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=polypeptide|length=373bp
MESTKGESSTLGYKFGGVSIDDGKSKPVISTDGLFGRRDMIKVVLLVTTV
TLSCLLFYKSANNPLNVVSLWKTDCYSSKTINETSLTVQKREPVSELERV
LMNAAMEDNTVIITALNEAWVKPNSTFDVFRESFKAGIGTEILLKHVIAV
CLDKHAYDRCIEVHPHCYLINATDSDQLSGPNRFMTPGYLKLIWRRMDLL
KEVLGLGYNFIFTDADILWLRDPFPRFFRDADFQITCDDYNGKPSDKNNH
VNSGFTYVKANSRTLNFYKFWIRSSRKFPGKHDQDVFNLIKNKQFVLKLG
INIRFLDTVYFGGFCQPSRDINVVNTMHANCCIGLDNKVNNLKAALEDWK
RYVSLNTTVSETKWNIPPKCGY.
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mRNA from alignment at westarv0_A01:1749755..1752242+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=mRNA|length=2488bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA CTTCCTTAACGGTGAGTATATTACATATGTTCATTGATAATTTAAATACT TCAATATAGTTTGAAGATTGATATGAGTTACGAATCCAATGAATTGTTGC TATTTTATTGTTAGAAGAACTTTACGGAGATATACTTGCACATATTTTGT TTACTGTCATCAGGAAAGTTAATATTTACGTAGATTTCTTATTGATAAAT GAGTAAATGCTCTATTTTCATGTTTGTAGCGAACTTGTTAATGATGATTT TCCAAACCGATTTTTAGTATTGAACCATAAACATTTAATGAGAATTACAC TACCAGACATTTTTTTGTTGTTGATATGTTAATCTTAACCAGTATTTTGA AAAACTGTACAGGCTGCGCCTAGACACTCATCTATGTGACAAATTGATCA TAAGCAAACTAATTTTTCTATAACGATTTTTTAAAAAAAATCAATCTAGA CAGAGACTTTTATGTACACCTAATGATTTTTTTTTCACCTAATGATTTTT TTTTTCACCTAATGATTCTTGAAACATTGATCTCAACTATATTCGTAGGT GCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTACTGATGAATGCGG CTATGGAGGATAACACGGTGATCATCACGGCGTTAAACGAAGCATGGGTC AAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTTTCAAAGCCGGTAT AGGAACAGAGATACTATTGAAACACGTGATCGCGGTTTGCTTGGATAAGC ATGCATACGATCGGTGCATAGAGGTTCATCCTCATTGCTACTTGATTAAC GCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGTTTATGACGCCTGG TTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTTAAGGAAGTTCTTG GATTAGGATACAACTTCATCTTCACGGTACGTGTAACACTAATTTTTTCC CCTTATTTCATATATAATTAGTTTATATATATATATATATATATATATAT ATATATATATATATTGATCCTTTAAAATATGAAATTTCCTCTATACCAAT TAGATATGTTTTCCCACCATCAGCGTATTTTCCAAACAATTTTTCATGAT ACGATTTATATACAAATAAAAGTATTAATAATATAATAAGAAAAATGATC TACTTTATGTAAGATATTAGTATTTGGTCGAAGTACGCTGAAGAGAAATG ACTTCAAGAAGAATATAAATAGTTATGATTATAAGAAACATGAATTGTTG ATTTATCGGACATTTATGTACCTATGGATATGAATAGGAATATTTTCCCC CCTATATTTTCCCTTTTGCTAGATTTTATTTATTTTTTTTTTGGTGAAGG TTTTAGACTTGACTATCGATATTCTTTGTTTTATTTTGAGCCTAACTCTG ACTTCCATTTATTCCGTTTTTCTTGATATATACTGTTGAACCATTGATTT GTTCATAATAGGAGGCGGGTTAGGACTCTAAGATAGAGATTAACTTCAGC ATAACATGTATGTTTACGTGTGTACATAACTACATATAGAGAGTGGTTTT ATTGTCAACGATATATAATTCTAGATATAAAGTAAGTATACTGAAATTAT CTTAAGATAGTAGTACGTTATTTTACATTATTGTAATTGTCATCATATCA TAATAAAGGTACCAATAACTAAGTTGTACATATCTTGTTTGATTGCTGGA CACTGTATATGATGATTGTGAAGTGTGTAAATGATAAGTTTGTTGTATTT GCATGCAGGATGCAGATATCTTGTGGCTTAGAGACCCATTTCCCCGGTTC TTCCGAGACGCCGACTTTCAGATAACATGCGATGATTACAATGGAAAGCC ATCAGACAAGAATAACCACGTGAACTCCGGATTCACATACGTCAAAGCAA ACAGCAGAACGTTGAACTTTTACAAGTTCTGGATCAGATCGAGTCGAAAG TTCCCTGGAAAACACGATCAAGATGTGTTCAACCTCATAAAAAACAAACA GTTTGTCTTGAAACTTGGAATCAACATTAGGTTTCTTGACACGGTTTACT TTGGAGGGTTTTGCCAGCCGAGCAGGGACATCAACGTGGTTAACACAATG CATGCTAATTGTTGTATTGGTTTGGACAACAAAGTGAATAATCTAAAGGC TGCTCTTGAAGACTGGAAACGATATGTATCGTTGAATACGACCGTGTCTG AGACTAAATGGAATATTCCACCGAAGTGTGGTTATTAA
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Coding sequence (CDS) from alignment at westarv0_A01:1749755..1752242+

>BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=CDS|length=1119bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTA
CTGATGAATGCGGCTATGGAGGATAACACGGTGATCATCACGGCGTTAAA
CGAAGCATGGGTCAAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTT
TCAAAGCCGGTATAGGAACAGAGATACTATTGAAACACGTGATCGCGGTT
TGCTTGGATAAGCATGCATACGATCGGTGCATAGAGGTTCATCCTCATTG
CTACTTGATTAACGCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGT
TTATGACGCCTGGTTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTT
AAGGAAGTTCTTGGATTAGGATACAACTTCATCTTCACGGATGCAGATAT
CTTGTGGCTTAGAGACCCATTTCCCCGGTTCTTCCGAGACGCCGACTTTC
AGATAACATGCGATGATTACAATGGAAAGCCATCAGACAAGAATAACCAC
GTGAACTCCGGATTCACATACGTCAAAGCAAACAGCAGAACGTTGAACTT
TTACAAGTTCTGGATCAGATCGAGTCGAAAGTTCCCTGGAAAACACGATC
AAGATGTGTTCAACCTCATAAAAAACAAACAGTTTGTCTTGAAACTTGGA
ATCAACATTAGGTTTCTTGACACGGTTTACTTTGGAGGGTTTTGCCAGCC
GAGCAGGGACATCAACGTGGTTAACACAATGCATGCTAATTGTTGTATTG
GTTTGGACAACAAAGTGAATAATCTAAAGGCTGCTCTTGAAGACTGGAAA
CGATATGTATCGTTGAATACGACCGTGTCTGAGACTAAATGGAATATTCC
ACCGAAGTGTGGTTATTAA
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