BnaA01T0026500WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0026500WE
Unique Name	BnaA01T0026500WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:1749755..1752242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0026500WE	BnaA01G0026500WE	Brassica napus Westar	gene	westarv0_A01 1749755..1752242 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0026500WE.exon1	BnaA01T0026500WE.exon1	Brassica napus Westar	exon	westarv0_A01 1749755..1750015 +
BnaA01T0026500WE.exon2	BnaA01T0026500WE.exon2	Brassica napus Westar	exon	westarv0_A01 1750553..1750930 +
BnaA01T0026500WE.exon3	BnaA01T0026500WE.exon3	Brassica napus Westar	exon	westarv0_A01 1751763..1752242 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0026500WE	cds.BnaA01T0026500WE	Brassica napus Westar	CDS	westarv0_A01 1749755..1750015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0026500WE	BnaA01T0026500WE-P	Brassica napus Westar	polypeptide	westarv0_A01 1749755..1752242 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:1749755..1752242+
coding sequence from alignment at westarv0_A01:1749755..1752242+

spliced messenger RNA

>BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=mRNA|length=1119bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTA
CTGATGAATGCGGCTATGGAGGATAACACGGTGATCATCACGGCGTTAAA
CGAAGCATGGGTCAAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTT
TCAAAGCCGGTATAGGAACAGAGATACTATTGAAACACGTGATCGCGGTT
TGCTTGGATAAGCATGCATACGATCGGTGCATAGAGGTTCATCCTCATTG
CTACTTGATTAACGCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGT
TTATGACGCCTGGTTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTT
AAGGAAGTTCTTGGATTAGGATACAACTTCATCTTCACGGATGCAGATAT
CTTGTGGCTTAGAGACCCATTTCCCCGGTTCTTCCGAGACGCCGACTTTC
AGATAACATGCGATGATTACAATGGAAAGCCATCAGACAAGAATAACCAC
GTGAACTCCGGATTCACATACGTCAAAGCAAACAGCAGAACGTTGAACTT
TTACAAGTTCTGGATCAGATCGAGTCGAAAGTTCCCTGGAAAACACGATC
AAGATGTGTTCAACCTCATAAAAAACAAACAGTTTGTCTTGAAACTTGGA
ATCAACATTAGGTTTCTTGACACGGTTTACTTTGGAGGGTTTTGCCAGCC
GAGCAGGGACATCAACGTGGTTAACACAATGCATGCTAATTGTTGTATTG
GTTTGGACAACAAAGTGAATAATCTAAAGGCTGCTCTTGAAGACTGGAAA
CGATATGTATCGTTGAATACGACCGTGTCTGAGACTAAATGGAATATTCC
ACCGAAGTGTGGTTATTAA

protein sequence of BnaA01T0026500WE

>BnaA01T0026500WE-P ID=BnaA01T0026500WE-P|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=polypeptide|length=373bp
MESTKGESSTLGYKFGGVSIDDGKSKPVISTDGLFGRRDMIKVVLLVTTV
TLSCLLFYKSANNPLNVVSLWKTDCYSSKTINETSLTVQKREPVSELERV
LMNAAMEDNTVIITALNEAWVKPNSTFDVFRESFKAGIGTEILLKHVIAV
CLDKHAYDRCIEVHPHCYLINATDSDQLSGPNRFMTPGYLKLIWRRMDLL
KEVLGLGYNFIFTDADILWLRDPFPRFFRDADFQITCDDYNGKPSDKNNH
VNSGFTYVKANSRTLNFYKFWIRSSRKFPGKHDQDVFNLIKNKQFVLKLG
INIRFLDTVYFGGFCQPSRDINVVNTMHANCCIGLDNKVNNLKAALEDWK
RYVSLNTTVSETKWNIPPKCGY.

mRNA from alignment at westarv0_A01:1749755..1752242+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=mRNA|length=2488bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGAGTATATTACATATGTTCATTGATAATTTAAATACT
TCAATATAGTTTGAAGATTGATATGAGTTACGAATCCAATGAATTGTTGC
TATTTTATTGTTAGAAGAACTTTACGGAGATATACTTGCACATATTTTGT
TTACTGTCATCAGGAAAGTTAATATTTACGTAGATTTCTTATTGATAAAT
GAGTAAATGCTCTATTTTCATGTTTGTAGCGAACTTGTTAATGATGATTT
TCCAAACCGATTTTTAGTATTGAACCATAAACATTTAATGAGAATTACAC
TACCAGACATTTTTTTGTTGTTGATATGTTAATCTTAACCAGTATTTTGA
AAAACTGTACAGGCTGCGCCTAGACACTCATCTATGTGACAAATTGATCA
TAAGCAAACTAATTTTTCTATAACGATTTTTTAAAAAAAATCAATCTAGA
CAGAGACTTTTATGTACACCTAATGATTTTTTTTTCACCTAATGATTTTT
TTTTTCACCTAATGATTCTTGAAACATTGATCTCAACTATATTCGTAGGT
GCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTACTGATGAATGCGG
CTATGGAGGATAACACGGTGATCATCACGGCGTTAAACGAAGCATGGGTC
AAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTTTCAAAGCCGGTAT
AGGAACAGAGATACTATTGAAACACGTGATCGCGGTTTGCTTGGATAAGC
ATGCATACGATCGGTGCATAGAGGTTCATCCTCATTGCTACTTGATTAAC
GCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGTTTATGACGCCTGG
TTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTTAAGGAAGTTCTTG
GATTAGGATACAACTTCATCTTCACGGTACGTGTAACACTAATTTTTTCC
CCTTATTTCATATATAATTAGTTTATATATATATATATATATATATATAT
ATATATATATATATTGATCCTTTAAAATATGAAATTTCCTCTATACCAAT
TAGATATGTTTTCCCACCATCAGCGTATTTTCCAAACAATTTTTCATGAT
ACGATTTATATACAAATAAAAGTATTAATAATATAATAAGAAAAATGATC
TACTTTATGTAAGATATTAGTATTTGGTCGAAGTACGCTGAAGAGAAATG
ACTTCAAGAAGAATATAAATAGTTATGATTATAAGAAACATGAATTGTTG
ATTTATCGGACATTTATGTACCTATGGATATGAATAGGAATATTTTCCCC
CCTATATTTTCCCTTTTGCTAGATTTTATTTATTTTTTTTTTGGTGAAGG
TTTTAGACTTGACTATCGATATTCTTTGTTTTATTTTGAGCCTAACTCTG
ACTTCCATTTATTCCGTTTTTCTTGATATATACTGTTGAACCATTGATTT
GTTCATAATAGGAGGCGGGTTAGGACTCTAAGATAGAGATTAACTTCAGC
ATAACATGTATGTTTACGTGTGTACATAACTACATATAGAGAGTGGTTTT
ATTGTCAACGATATATAATTCTAGATATAAAGTAAGTATACTGAAATTAT
CTTAAGATAGTAGTACGTTATTTTACATTATTGTAATTGTCATCATATCA
TAATAAAGGTACCAATAACTAAGTTGTACATATCTTGTTTGATTGCTGGA
CACTGTATATGATGATTGTGAAGTGTGTAAATGATAAGTTTGTTGTATTT
GCATGCAGGATGCAGATATCTTGTGGCTTAGAGACCCATTTCCCCGGTTC
TTCCGAGACGCCGACTTTCAGATAACATGCGATGATTACAATGGAAAGCC
ATCAGACAAGAATAACCACGTGAACTCCGGATTCACATACGTCAAAGCAA
ACAGCAGAACGTTGAACTTTTACAAGTTCTGGATCAGATCGAGTCGAAAG
TTCCCTGGAAAACACGATCAAGATGTGTTCAACCTCATAAAAAACAAACA
GTTTGTCTTGAAACTTGGAATCAACATTAGGTTTCTTGACACGGTTTACT
TTGGAGGGTTTTGCCAGCCGAGCAGGGACATCAACGTGGTTAACACAATG
CATGCTAATTGTTGTATTGGTTTGGACAACAAAGTGAATAATCTAAAGGC
TGCTCTTGAAGACTGGAAACGATATGTATCGTTGAATACGACCGTGTCTG
AGACTAAATGGAATATTCCACCGAAGTGTGGTTATTAA

Coding sequence (CDS) from alignment at westarv0_A01:1749755..1752242+

>BnaA01T0026500WE ID=BnaA01T0026500WE|Name=BnaA01T0026500WE|organism=Brassica napus Westar|type=CDS|length=1119bp|location=Sequence derived from alignment at westarv0_A01:1749755..1752242+ (Brassica napus Westar)
ATGGAGAGCACGAAAGGTGAATCTTCTACCTTGGGATACAAGTTCGGCGG
AGTTAGCATTGACGACGGAAAATCTAAGCCGGTGATATCTACCGATGGTT
TGTTCGGAAGAAGAGACATGATTAAAGTCGTGTTGTTGGTCACGACCGTG
ACACTTTCTTGCCTTTTGTTCTATAAATCTGCAAATAATCCCCTCAACGT
GGTGTCTCTATGGAAGACCGATTGTTATTCTTCAAAAACCATTAACGAGA
CTTCCTTAACGGTGCAAAAGAGGGAACCGGTTTCAGAACTAGAGAGAGTA
CTGATGAATGCGGCTATGGAGGATAACACGGTGATCATCACGGCGTTAAA
CGAAGCATGGGTCAAACCAAACTCAACTTTCGACGTGTTTCGAGAGAGTT
TCAAAGCCGGTATAGGAACAGAGATACTATTGAAACACGTGATCGCGGTT
TGCTTGGATAAGCATGCATACGATCGGTGCATAGAGGTTCATCCTCATTG
CTACTTGATTAACGCCACAGATTCAGACCAACTCTCGGGTCCAAACCGGT
TTATGACGCCTGGTTACTTGAAACTCATTTGGCGGCGAATGGATCTTCTT
AAGGAAGTTCTTGGATTAGGATACAACTTCATCTTCACGGATGCAGATAT
CTTGTGGCTTAGAGACCCATTTCCCCGGTTCTTCCGAGACGCCGACTTTC
AGATAACATGCGATGATTACAATGGAAAGCCATCAGACAAGAATAACCAC
GTGAACTCCGGATTCACATACGTCAAAGCAAACAGCAGAACGTTGAACTT
TTACAAGTTCTGGATCAGATCGAGTCGAAAGTTCCCTGGAAAACACGATC
AAGATGTGTTCAACCTCATAAAAAACAAACAGTTTGTCTTGAAACTTGGA
ATCAACATTAGGTTTCTTGACACGGTTTACTTTGGAGGGTTTTGCCAGCC
GAGCAGGGACATCAACGTGGTTAACACAATGCATGCTAATTGTTGTATTG
GTTTGGACAACAAAGTGAATAATCTAAAGGCTGCTCTTGAAGACTGGAAA
CGATATGTATCGTTGAATACGACCGTGTCTGAGACTAAATGGAATATTCC
ACCGAAGTGTGGTTATTAA

Orthology

View orthology data for BnaA01T0026500WE