Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0020600WE | BnaA01G0020600WE | Brassica napus Westar | gene | westarv0_A01 1351192..1352560 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0020600WE.exon2 | BnaA01T0020600WE.exon2 | Brassica napus Westar | exon | westarv0_A01 1351192..1351972 - |
| BnaA01T0020600WE.exon1 | BnaA01T0020600WE.exon1 | Brassica napus Westar | exon | westarv0_A01 1352412..1352560 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0020600WE.utr3p1 | BnaA01T0020600WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 1351192..1351362 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0020600WE | cds.BnaA01T0020600WE | Brassica napus Westar | CDS | westarv0_A01 1352412..1352557 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0020600WE.utr5p1 | BnaA01T0020600WE.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 1352558..1352560 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0020600WE ID=BnaA01T0020600WE|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=mRNA|length=930bp|location=Sequence derived from alignment at westarv0_A01:1351192..1352560- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
GACATGGCAGGCGGAAGCGGCGGCGGAACATCAGGAGCATCGGCGGATCT
TCACTCCGCGGCGAGATCCGGTGATTTAGCGGCAGTTCAGCTAATCGTCA
GCTCTAATCCTTTGGCCGTCAATTCGAGGGATAAGCATTCTCGGACTCCA
CTACACTTAGCAGCATGGGCAGGCCACAATGAGGTCGTGAGCTACTTATG
CAAGAACAAAGCCGATGTTGGTGCTGCAGCAGTGGATGATATGGGCGCAA
TCCACTTTGCTTCTCAAAAGGGACACTTGGAAGTTGTCAGAACTCTTCTC
TCCGCTGGGGTTTCTTTGAAATCCATCACTCGCAAGGGACTTACACCTCT
TCACTACGCTGCTCAAGGTTCTCACTTGGACCTCGTTAAGTACCTGGTTA
AGAAAGGAGCCAATGTCAGAGCCACCACAAAGGCCGGGAAGAATCCTGCG
GATGTTGCGGGTAACCCTGAAACCCAAACCTTCCTTGAAGAATGTGAAGA
GCAGGCGAGGAAAGACAAGGTGAAGAACAGTCAGAAAAAGACGGAGGAAG
TGAAACCAGAGAGTTGTGATGTTGAAGGAGCTGACAAGGGTTTGAAAAGA
AAGGATTCTGAGGATGTTAACGAGGAGGGGGAGTTGGAAGAAGCTTCTTC
TAAAGCGAAAAAGCCTAAAGTTGTTCTTCGTCATCTTCAGGAGAGTGATG
ACACAGCAGCTGACCAAGAAGAAGAAACTGAGGAACCAACCAATGGAACT
TCAACTTGAAATGAGTTGTAACATCCATCATATAATATAATTCAGAGAAT
TCACCAAAACTATAGTTTGTTTATGTGATCCATCAGTTTCTTATAGCTGT
TTAATCAAAACAATCCTCAAATTCTAAAGCTGTTCTCTGCCTTGCTTACT
TTTTGCTGTAAATGATTTTAAGATTACATC back to topprotein sequence of BnaA01T0020600WE >BnaA01T0020600WE-P ID=BnaA01T0020600WE-P|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=polypeptide|length=252bp
MAGGSGGGTSGASADLHSAARSGDLAAVQLIVSSNPLAVNSRDKHSRTPL
HLAAWAGHNEVVSYLCKNKADVGAAAVDDMGAIHFASQKGHLEVVRTLLS
AGVSLKSITRKGLTPLHYAAQGSHLDLVKYLVKKGANVRATTKAGKNPAD
VAGNPETQTFLEECEEQARKDKVKNSQKKTEEVKPESCDVEGADKGLKRK
DSEDVNEEGELEEASSKAKKPKVVLRHLQESDDTAADQEEETEEPTNGTS
T. back to topmRNA from alignment at westarv0_A01:1351192..1352560- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0020600WE ID=BnaA01T0020600WE|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=mRNA|length=1369bp|location=Sequence derived from alignment at westarv0_A01:1351192..1352560- (Brassica napus Westar)
GACATGGCAGGCGGAAGCGGCGGCGGAACATCAGGAGCATCGGCGGATCT
TCACTCCGCGGCGAGATCCGGTGATTTAGCGGCAGTTCAGCTAATCGTCA
GCTCTAATCCTTTGGCCGTCAATTCGAGGGATAAGCATTCTCGGACTCCG
TATCCTTTTTCTTCTCGCAAAATCACTCACTCTTCGATTTTATACTGTTC
GATCATGAAAGTTATCTTCTCCGAGATGTATTTGCTGATTGTTGTTTGCT
ATGACCTTAGTTAGGGGGGCTCATCTCGAGATTATTGCTTGTTGAAACAT
TGGCCTCATCTATGATTCATTGATTGTGCTGTGTATAGCTTGTTTTTGAT
TCTCGATGCTTGCTTTGGTTGCGAAGACTCAAGAATGGCTAATTCTTAAG
CAATTTTGTCTGTAGATTGTAGTAGCTAGAGAAAGGTTATATAGCCTTAG
TTAAGGGAATGCTTAAGTTTTGGTTTTTAAGGGAATGCTTAAGTTTTAAA
CATTTTTGTTCATAGAGTATAGCTAAGAAGAAAGATATATTCGTTCTAGT
GTATTTGTCCTTAACATGGTGATCTCGTGGAGCAATAGACTACACTTAGC
AGCATGGGCAGGCCACAATGAGGTCGTGAGCTACTTATGCAAGAACAAAG
CCGATGTTGGTGCTGCAGCAGTGGATGATATGGGCGCAATCCACTTTGCT
TCTCAAAAGGGACACTTGGAAGTTGTCAGAACTCTTCTCTCCGCTGGGGT
TTCTTTGAAATCCATCACTCGCAAGGGACTTACACCTCTTCACTACGCTG
CTCAAGGTTCTCACTTGGACCTCGTTAAGTACCTGGTTAAGAAAGGAGCC
AATGTCAGAGCCACCACAAAGGCCGGGAAGAATCCTGCGGATGTTGCGGG
TAACCCTGAAACCCAAACCTTCCTTGAAGAATGTGAAGAGCAGGCGAGGA
AAGACAAGGTGAAGAACAGTCAGAAAAAGACGGAGGAAGTGAAACCAGAG
AGTTGTGATGTTGAAGGAGCTGACAAGGGTTTGAAAAGAAAGGATTCTGA
GGATGTTAACGAGGAGGGGGAGTTGGAAGAAGCTTCTTCTAAAGCGAAAA
AGCCTAAAGTTGTTCTTCGTCATCTTCAGGAGAGTGATGACACAGCAGCT
GACCAAGAAGAAGAAACTGAGGAACCAACCAATGGAACTTCAACTTGAAA
TGAGTTGTAACATCCATCATATAATATAATTCAGAGAATTCACCAAAACT
ATAGTTTGTTTATGTGATCCATCAGTTTCTTATAGCTGTTTAATCAAAAC
AATCCTCAAATTCTAAAGCTGTTCTCTGCCTTGCTTACTTTTTGCTGTAA
ATGATTTTAAGATTACATC back to topCoding sequence (CDS) from alignment at westarv0_A01:1351192..1352560- >BnaA01T0020600WE ID=BnaA01T0020600WE|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=CDS|length=756bp|location=Sequence derived from alignment at westarv0_A01:1351192..1352560- (Brassica napus Westar)
ATGGCAGGCGGAAGCGGCGGCGGAACATCAGGAGCATCGGCGGATCTTCA
CTCCGCGGCGAGATCCGGTGATTTAGCGGCAGTTCAGCTAATCGTCAGCT
CTAATCCTTTGGCCGTCAATTCGAGGGATAAGCATTCTCGGACTCCACTA
CACTTAGCAGCATGGGCAGGCCACAATGAGGTCGTGAGCTACTTATGCAA
GAACAAAGCCGATGTTGGTGCTGCAGCAGTGGATGATATGGGCGCAATCC
ACTTTGCTTCTCAAAAGGGACACTTGGAAGTTGTCAGAACTCTTCTCTCC
GCTGGGGTTTCTTTGAAATCCATCACTCGCAAGGGACTTACACCTCTTCA
CTACGCTGCTCAAGGTTCTCACTTGGACCTCGTTAAGTACCTGGTTAAGA
AAGGAGCCAATGTCAGAGCCACCACAAAGGCCGGGAAGAATCCTGCGGAT
GTTGCGGGTAACCCTGAAACCCAAACCTTCCTTGAAGAATGTGAAGAGCA
GGCGAGGAAAGACAAGGTGAAGAACAGTCAGAAAAAGACGGAGGAAGTGA
AACCAGAGAGTTGTGATGTTGAAGGAGCTGACAAGGGTTTGAAAAGAAAG
GATTCTGAGGATGTTAACGAGGAGGGGGAGTTGGAAGAAGCTTCTTCTAA
AGCGAAAAAGCCTAAAGTTGTTCTTCGTCATCTTCAGGAGAGTGATGACA
CAGCAGCTGACCAAGAAGAAGAAACTGAGGAACCAACCAATGGAACTTCA
ACTTGA back to top
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