BnaA01T0020600WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0020600WE
Unique NameBnaA01T0020600WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:1351192..1352560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0020600WEBnaA01G0020600WEBrassica napus Westargenewestarv0_A01 1351192..1352560 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0020600WE.exon2BnaA01T0020600WE.exon2Brassica napus Westarexonwestarv0_A01 1351192..1351972 -
BnaA01T0020600WE.exon1BnaA01T0020600WE.exon1Brassica napus Westarexonwestarv0_A01 1352412..1352560 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0020600WE.utr3p1BnaA01T0020600WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 1351192..1351362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0020600WEcds.BnaA01T0020600WEBrassica napus WestarCDSwestarv0_A01 1352412..1352557 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0020600WE.utr5p1BnaA01T0020600WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 1352558..1352560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0020600WEBnaA01T0020600WE-PBrassica napus Westarpolypeptidewestarv0_A01 1351363..1352557 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0020600WE ID=BnaA01T0020600WE|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=mRNA|length=930bp|location=Sequence derived from alignment at westarv0_A01:1351192..1352560- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
GACATGGCAGGCGGAAGCGGCGGCGGAACATCAGGAGCATCGGCGGATCT
TCACTCCGCGGCGAGATCCGGTGATTTAGCGGCAGTTCAGCTAATCGTCA
GCTCTAATCCTTTGGCCGTCAATTCGAGGGATAAGCATTCTCGGACTCCA
CTACACTTAGCAGCATGGGCAGGCCACAATGAGGTCGTGAGCTACTTATG
CAAGAACAAAGCCGATGTTGGTGCTGCAGCAGTGGATGATATGGGCGCAA
TCCACTTTGCTTCTCAAAAGGGACACTTGGAAGTTGTCAGAACTCTTCTC
TCCGCTGGGGTTTCTTTGAAATCCATCACTCGCAAGGGACTTACACCTCT
TCACTACGCTGCTCAAGGTTCTCACTTGGACCTCGTTAAGTACCTGGTTA
AGAAAGGAGCCAATGTCAGAGCCACCACAAAGGCCGGGAAGAATCCTGCG
GATGTTGCGGGTAACCCTGAAACCCAAACCTTCCTTGAAGAATGTGAAGA
GCAGGCGAGGAAAGACAAGGTGAAGAACAGTCAGAAAAAGACGGAGGAAG
TGAAACCAGAGAGTTGTGATGTTGAAGGAGCTGACAAGGGTTTGAAAAGA
AAGGATTCTGAGGATGTTAACGAGGAGGGGGAGTTGGAAGAAGCTTCTTC
TAAAGCGAAAAAGCCTAAAGTTGTTCTTCGTCATCTTCAGGAGAGTGATG
ACACAGCAGCTGACCAAGAAGAAGAAACTGAGGAACCAACCAATGGAACT
TCAACTTGAAATGAGTTGTAACATCCATCATATAATATAATTCAGAGAAT
TCACCAAAACTATAGTTTGTTTATGTGATCCATCAGTTTCTTATAGCTGT
TTAATCAAAACAATCCTCAAATTCTAAAGCTGTTCTCTGCCTTGCTTACT
TTTTGCTGTAAATGATTTTAAGATTACATC
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protein sequence of BnaA01T0020600WE

>BnaA01T0020600WE-P ID=BnaA01T0020600WE-P|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=polypeptide|length=252bp
MAGGSGGGTSGASADLHSAARSGDLAAVQLIVSSNPLAVNSRDKHSRTPL
HLAAWAGHNEVVSYLCKNKADVGAAAVDDMGAIHFASQKGHLEVVRTLLS
AGVSLKSITRKGLTPLHYAAQGSHLDLVKYLVKKGANVRATTKAGKNPAD
VAGNPETQTFLEECEEQARKDKVKNSQKKTEEVKPESCDVEGADKGLKRK
DSEDVNEEGELEEASSKAKKPKVVLRHLQESDDTAADQEEETEEPTNGTS
T.
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mRNA from alignment at westarv0_A01:1351192..1352560-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0020600WE ID=BnaA01T0020600WE|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=mRNA|length=1369bp|location=Sequence derived from alignment at westarv0_A01:1351192..1352560- (Brassica napus Westar)
GACATGGCAGGCGGAAGCGGCGGCGGAACATCAGGAGCATCGGCGGATCT
TCACTCCGCGGCGAGATCCGGTGATTTAGCGGCAGTTCAGCTAATCGTCA
GCTCTAATCCTTTGGCCGTCAATTCGAGGGATAAGCATTCTCGGACTCCG
TATCCTTTTTCTTCTCGCAAAATCACTCACTCTTCGATTTTATACTGTTC
GATCATGAAAGTTATCTTCTCCGAGATGTATTTGCTGATTGTTGTTTGCT
ATGACCTTAGTTAGGGGGGCTCATCTCGAGATTATTGCTTGTTGAAACAT
TGGCCTCATCTATGATTCATTGATTGTGCTGTGTATAGCTTGTTTTTGAT
TCTCGATGCTTGCTTTGGTTGCGAAGACTCAAGAATGGCTAATTCTTAAG
CAATTTTGTCTGTAGATTGTAGTAGCTAGAGAAAGGTTATATAGCCTTAG
TTAAGGGAATGCTTAAGTTTTGGTTTTTAAGGGAATGCTTAAGTTTTAAA
CATTTTTGTTCATAGAGTATAGCTAAGAAGAAAGATATATTCGTTCTAGT
GTATTTGTCCTTAACATGGTGATCTCGTGGAGCAATAGACTACACTTAGC
AGCATGGGCAGGCCACAATGAGGTCGTGAGCTACTTATGCAAGAACAAAG
CCGATGTTGGTGCTGCAGCAGTGGATGATATGGGCGCAATCCACTTTGCT
TCTCAAAAGGGACACTTGGAAGTTGTCAGAACTCTTCTCTCCGCTGGGGT
TTCTTTGAAATCCATCACTCGCAAGGGACTTACACCTCTTCACTACGCTG
CTCAAGGTTCTCACTTGGACCTCGTTAAGTACCTGGTTAAGAAAGGAGCC
AATGTCAGAGCCACCACAAAGGCCGGGAAGAATCCTGCGGATGTTGCGGG
TAACCCTGAAACCCAAACCTTCCTTGAAGAATGTGAAGAGCAGGCGAGGA
AAGACAAGGTGAAGAACAGTCAGAAAAAGACGGAGGAAGTGAAACCAGAG
AGTTGTGATGTTGAAGGAGCTGACAAGGGTTTGAAAAGAAAGGATTCTGA
GGATGTTAACGAGGAGGGGGAGTTGGAAGAAGCTTCTTCTAAAGCGAAAA
AGCCTAAAGTTGTTCTTCGTCATCTTCAGGAGAGTGATGACACAGCAGCT
GACCAAGAAGAAGAAACTGAGGAACCAACCAATGGAACTTCAACTTGAAA
TGAGTTGTAACATCCATCATATAATATAATTCAGAGAATTCACCAAAACT
ATAGTTTGTTTATGTGATCCATCAGTTTCTTATAGCTGTTTAATCAAAAC
AATCCTCAAATTCTAAAGCTGTTCTCTGCCTTGCTTACTTTTTGCTGTAA
ATGATTTTAAGATTACATC
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Coding sequence (CDS) from alignment at westarv0_A01:1351192..1352560-

>BnaA01T0020600WE ID=BnaA01T0020600WE|Name=BnaA01T0020600WE|organism=Brassica napus Westar|type=CDS|length=756bp|location=Sequence derived from alignment at westarv0_A01:1351192..1352560- (Brassica napus Westar)
ATGGCAGGCGGAAGCGGCGGCGGAACATCAGGAGCATCGGCGGATCTTCA
CTCCGCGGCGAGATCCGGTGATTTAGCGGCAGTTCAGCTAATCGTCAGCT
CTAATCCTTTGGCCGTCAATTCGAGGGATAAGCATTCTCGGACTCCACTA
CACTTAGCAGCATGGGCAGGCCACAATGAGGTCGTGAGCTACTTATGCAA
GAACAAAGCCGATGTTGGTGCTGCAGCAGTGGATGATATGGGCGCAATCC
ACTTTGCTTCTCAAAAGGGACACTTGGAAGTTGTCAGAACTCTTCTCTCC
GCTGGGGTTTCTTTGAAATCCATCACTCGCAAGGGACTTACACCTCTTCA
CTACGCTGCTCAAGGTTCTCACTTGGACCTCGTTAAGTACCTGGTTAAGA
AAGGAGCCAATGTCAGAGCCACCACAAAGGCCGGGAAGAATCCTGCGGAT
GTTGCGGGTAACCCTGAAACCCAAACCTTCCTTGAAGAATGTGAAGAGCA
GGCGAGGAAAGACAAGGTGAAGAACAGTCAGAAAAAGACGGAGGAAGTGA
AACCAGAGAGTTGTGATGTTGAAGGAGCTGACAAGGGTTTGAAAAGAAAG
GATTCTGAGGATGTTAACGAGGAGGGGGAGTTGGAAGAAGCTTCTTCTAA
AGCGAAAAAGCCTAAAGTTGTTCTTCGTCATCTTCAGGAGAGTGATGACA
CAGCAGCTGACCAAGAAGAAGAAACTGAGGAACCAACCAATGGAACTTCA
ACTTGA
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