BnaA01T0008000WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0008000WE
Unique NameBnaA01T0008000WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:486530..491620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0008000WEBnaA01G0008000WEBrassica napus Westargenewestarv0_A01 486530..491620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0008000WEBnaA01T0008000WE-PBrassica napus Westarpolypeptidewestarv0_A01 486549..491608 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0008000WE.utr5p1BnaA01T0008000WE.utr5p1Brassica napus Westarfive_prime_UTRwestarv0_A01 486530..486548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0008000WE.exon1BnaA01T0008000WE.exon1Brassica napus Westarexonwestarv0_A01 486530..486930 +
BnaA01T0008000WE.exon2BnaA01T0008000WE.exon2Brassica napus Westarexonwestarv0_A01 487165..487412 +
BnaA01T0008000WE.exon3BnaA01T0008000WE.exon3Brassica napus Westarexonwestarv0_A01 487503..487568 +
BnaA01T0008000WE.exon4BnaA01T0008000WE.exon4Brassica napus Westarexonwestarv0_A01 487739..487817 +
BnaA01T0008000WE.exon5BnaA01T0008000WE.exon5Brassica napus Westarexonwestarv0_A01 487914..487993 +
BnaA01T0008000WE.exon6BnaA01T0008000WE.exon6Brassica napus Westarexonwestarv0_A01 488105..488128 +
BnaA01T0008000WE.exon7BnaA01T0008000WE.exon7Brassica napus Westarexonwestarv0_A01 488238..488362 +
BnaA01T0008000WE.exon8BnaA01T0008000WE.exon8Brassica napus Westarexonwestarv0_A01 490566..490782 +
BnaA01T0008000WE.exon9BnaA01T0008000WE.exon9Brassica napus Westarexonwestarv0_A01 490873..490926 +
BnaA01T0008000WE.exon10BnaA01T0008000WE.exon10Brassica napus Westarexonwestarv0_A01 491002..491048 +
BnaA01T0008000WE.exon11BnaA01T0008000WE.exon11Brassica napus Westarexonwestarv0_A01 491139..491223 +
BnaA01T0008000WE.exon12BnaA01T0008000WE.exon12Brassica napus Westarexonwestarv0_A01 491310..491373 +
BnaA01T0008000WE.exon13BnaA01T0008000WE.exon13Brassica napus Westarexonwestarv0_A01 491475..491620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0008000WEcds.BnaA01T0008000WEBrassica napus WestarCDSwestarv0_A01 486549..486930 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0008000WE.utr3p1BnaA01T0008000WE.utr3p1Brassica napus Westarthree_prime_UTRwestarv0_A01 491609..491620 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0008000WE ID=BnaA01T0008000WE|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=mRNA|length=1636bp|location=Sequence derived from alignment at westarv0_A01:486530..491620+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
CAAAACCTTGGTGTGAGATATGGATATACCGCCGATGAAAAACCCAATGG
ACGACTTGTTCGGCGAAGACTCCGACAACGACTCACGATCCTCGCTTTCG
AAATCCTCCTCTTCCGGCAATGCTTCTTCCTCCTCCTCGTCTGGCTCAGC
TTCCTCTTCCGGAGCTTCTTCCTCTAAAGGCGGAGATGGAGACGGTGGTG
GTGCTGATTCCAGCAGCTCAAGCGATAGCGGAAGCAGCGGCGGGAGAGAA
GACCATGGAGGTGATAGCTATAGGAGCAACGATAATGTAGATAGTGGAAG
CTACCCTTACGAAGAAGAGGAAGATGATGAGAGAGATCTTTTTGGGTCTG
ATAATGAAGACTACACTAAGACTCCTGCTTTAAGCACTTACTCAATCCCT
GTTTTGCCTGCGGGATGGAGCAGTGACAACAACGGTGGGAGAGGAGGAAC
GGGACGTGGGCGTTGGGGAAATGGGAGAGGAGGAGCTGGGCTTCTTCCTC
GCCCTGGGCCTTTCCCTGGAGGACGTGAAGGCCGCGGTGGGTTTGGTGGG
AGATACCAGAATTATCAGCGTGATGAGCGGTTTGTTTCTGAGCTTAAACT
TTCGAAAAGCAAAGAGACATTGTCTAGAAAATCCACCGTCTTTCAGGAGC
CATGTGAGCTTACTAGCTACAGTCGTGTAGAAGGTGGAGAAGTGTTCTTT
GATGAGCGAGGTTTGAGGCTTTTCAAGCGTCATGTTTCTGAAGACATTGG
AGCGGATTTAAATCAAGGTTATGATACTTTTATTGAGAAAATAGATCTGG
GCTCTGAGGGCTTTGGTGACTTTCTTGCCAGCATTAGAGCAAAAAACATT
TCGTTGGAGAACATTCATTTTGTGACATTCCGTAATAATCTAAACAAGAT
ACTGGGTGCTGCTTATAACCGGAATGAACCGTGGGAGATGGGTGTGCATA
AGAGGAACGGGACCATTTATCTTGATGTGCATAAGCTGCCTGAAAGGCCA
CAGAGTGACTTAGATCGCCGCAGATGTTACTGGGGTTACTGTTTCGAAAG
CCTAGCGACGGAAGATCCAGGAAGAGCTTATGGGGAAGATATACATCACG
TGGATGCAAACGTTGAATTTGTATCTGTTGTCAAGACTAAACTCGGAGCT
CACCGTGTTCTCATGGGTGCTGAAATGGATTGCTGTGACGAAACTGATGA
AGGAAGGAGGATTTATATAGAGTTGAAAACATCTCGCGAGTTGGATGATC
GTACCGTAGAGAGATTTGAGAGAGAGAAGCTGCTTAAATTCTGGATACAA
TCATTTGTAGCAGGAGTGCCATATATTCTCGTTGGATATAGAGACGATGG
AGGGAGGCTAGTACGCACAGAGAGACTGAGAACAAAAGATATCGCACACA
GAGCCAGACTGAAAAACTATTGGCAGGGAGGAGTGTGTTTGGCATTTGCT
GATGAGGTTCTTTGCTGGCTTTACGGCACTGTTAAAGAGAACGAAGATTA
CACACTACAGTTCGTGCATCCATTCATGAGGCTAGAGCTTCTTCAAGCTC
AGTCTTGTCCTGACGCCATCACTAATCATGTTCACCTTCTTCAACATCCT
TCATCACCACCACCACCTCAGTAACTCTTTAATGTA
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protein sequence of BnaA01T0008000WE

>BnaA01T0008000WE-P ID=BnaA01T0008000WE-P|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=polypeptide|length=535bp
MDIPPMKNPMDDLFGEDSDNDSRSSLSKSSSSGNASSSSSSGSASSSGAS
SSKGGDGDGGGADSSSSSDSGSSGGREDHGGDSYRSNDNVDSGSYPYEEE
EDDERDLFGSDNEDYTKTPALSTYSIPVLPAGWSSDNNGGRGGTGRGRWG
NGRGGAGLLPRPGPFPGGREGRGGFGGRYQNYQRDERFVSELKLSKSKET
LSRKSTVFQEPCELTSYSRVEGGEVFFDERGLRLFKRHVSEDIGADLNQG
YDTFIEKIDLGSEGFGDFLASIRAKNISLENIHFVTFRNNLNKILGAAYN
RNEPWEMGVHKRNGTIYLDVHKLPERPQSDLDRRRCYWGYCFESLATEDP
GRAYGEDIHHVDANVEFVSVVKTKLGAHRVLMGAEMDCCDETDEGRRIYI
ELKTSRELDDRTVERFEREKLLKFWIQSFVAGVPYILVGYRDDGGRLVRT
ERLRTKDIAHRARLKNYWQGGVCLAFADEVLCWLYGTVKENEDYTLQFVH
PFMRLELLQAQSCPDAITNHVHLLQHPSSPPPPQ.
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mRNA from alignment at westarv0_A01:486530..491620+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0008000WE ID=BnaA01T0008000WE|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=mRNA|length=5091bp|location=Sequence derived from alignment at westarv0_A01:486530..491620+ (Brassica napus Westar)
CAAAACCTTGGTGTGAGATATGGATATACCGCCGATGAAAAACCCAATGG ACGACTTGTTCGGCGAAGACTCCGACAACGACTCACGATCCTCGCTTTCG AAATCCTCCTCTTCCGGCAATGCTTCTTCCTCCTCCTCGTCTGGCTCAGC TTCCTCTTCCGGAGCTTCTTCCTCTAAAGGCGGAGATGGAGACGGTGGTG GTGCTGATTCCAGCAGCTCAAGCGATAGCGGAAGCAGCGGCGGGAGAGAA GACCATGGAGGTGATAGCTATAGGAGCAACGATAATGTAGATAGTGGAAG CTACCCTTACGAAGAAGAGGAAGATGATGAGAGAGATCTTTTTGGGTCTG ATAATGAAGACTACACTAAGACTCCTGCTTTAAGCACTTACTCAATCCCT GGTACGTTTTGGCTCTCAGTCTCTATGTAAAGGTTGAACCTTTTTTGTTT GTGTACTTACTGGTTGCGACTGAATTGGCTTCTGGGTTTTGTCTGGATAC TAAATTTGTACTTTCTATTTGTGGCTCAGTCTCTATGTAAATGTAAAAGT GGAACCTTTTTGTTGTCTACTTACAAAATTGTGTGTTTGGGCTTTTGGGG TTTTGTCTGGATAGTACTGATGTGAGATATGACAGTTTTGCCTGCGGGAT GGAGCAGTGACAACAACGGTGGGAGAGGAGGAACGGGACGTGGGCGTTGG GGAAATGGGAGAGGAGGAGCTGGGCTTCTTCCTCGCCCTGGGCCTTTCCC TGGAGGACGTGAAGGCCGCGGTGGGTTTGGTGGGAGATACCAGAATTATC AGCGTGATGAGCGGTTTGTTTCTGAGCTTAAACTTTCGAAAAGCAAAGAG ACATTGTCTAGAAAATCCACCGTCTTTCAGGAGGTAACGTTTACATTTGT TTTAGATTATTTAGAAGCAGAATCGTTTTGCTTATTGATAGGTAACACGT TTCTGCATGTTTGATATTGACAGCCATGTGAGCTTACTAGCTACAGTCGT GTAGAAGGTGGAGAAGTGTTCTTTGATGAGCGAGGTTTGGTGAGAGTTTT TGGTATTGTTGTTCTTTATGATTCTCGCTTGTTCTTTTCCTCATCCCACT AAACTATCTATTTGATTGGCTTGTAATGTATATACGCAAGCACATACATA TGTGAAATATACAAATCGACAATACCTTAATATGTATCCACTTTGTTATT GTTTTCCAGAGGCTTTTCAAGCGTCATGTTTCTGAAGACATTGGAGCGGA TTTAAATCAAGGTTATGATACTTTTATTGAGAAAATAGGTAATGGTTATC ATATTTTGTCAGAACTATTAGATCATGTGCAAGATGTCGAAGTTTGAGGT ATTAAGCTGCTGATTGTTCTCTATGTTGAGGCAGATCTGGGCTCTGAGGG CTTTGGTGACTTTCTTGCCAGCATTAGAGCAAAAAACATTTCGTTGGAGA ACATTCATTTTGTGGTACGAAGTGCTTGTCTATCAGTCCATTTCACTGCC AGTTTCATTACTATTTGTAGACATGCTCCTTAATGCTCTCTTTTTTCTTT TTTTTTTTTGCTTTGTTTTCGACAGACATTCCGTAATAATCTAAACAAGG TTAAGGAAGATCCCCCAACATTTATATTATGCTTTCTTCTTGAAGCCAAT TAACTCCATAGTTCTGTTTGCTAAATCACTCGCTTTCCTTTTGGTATATC TGTTTCAGATACTGGGTGCTGCTTATAACCGGAATGAACCGTGGGAGATG GGTGTGCATAAGAGGAACGGGACCATTTATCTTGATGTGCATAAGCTGCC TGAAAGGCCACAGAGTGACTTAGATCGCCGCAGGTAAGTCTTCATTTTTA CTTGTTTTAACGGAAAAAAAAAGGGTGATTCTACTAATCCTACTATATAA AAGGAACTAAATTCAAGGCTTTTGGGACTATCCACCTCAGCCAAAATATT CTCATCAATAAAGAATTAGAAATAGATGTCATTTAGAAGATAATTAACTA ACATATGACTTTTAATATTTCTAGAAATTTCATATTTGTAACTGTTAATT TATTAATAGAATCATATATCTATATTGAATTATGTTCTATTTTTAATCAT TAGATTTCAAGGGTAAATAAAATATTAATTTATAATATATATATAGTTTA TAACTTTATATTGTAGTTATAAATAAAGAGAAATAACCAGGGAGGATGAA AAATCTCATGTAAAATTATATAATTAAAATGGTAAAATGGTGAGTATGAT GAGGTGAATCTAAGAAAATTTGTTGTACAAATTATGATGTTTTCTTCGTC CACTAAAATTATTTAAAATAAAATATATATTCACATAAATAAGTCAATAT TTGTTTTTTTTTTTTGGTAAGATGTTAAGATTATCATTTTTTGAAAGGTT ACACTGTTGTTTTTAAACAACCTATTACAACAAGGAAACAAAAACAACCA CCAACAACTCAAGGTAAAAAAAGCCTTAAAGAGGTTTTATACAAGAAATA TAAAAAAGAAGTAGAGAAGAGGAGAAAGAAGAACTTGCCGAGTAAGAGAG GAGACGGTCACGCATTATACGGTCGAGAGAGGCAAGGATGACTGATGAAG GTGAAGAGACAGCTGTGAACACACGAGCATTACGCTCTTTCCACAGCAGG TAGATAGATGACTGAAAGTAGAGCTTGATAACTGAAGTAGCATGCGCATC TGCGTTGACGCGAGGTTGATTGATCCAGGCTGCAACATACTGTAGATCAG CCGGAGGAGAAATCCAAACTTCAGCAGCAAAAGGCTCCCATATCAAACGA GATAAAGAGCACTCAAAGAAGAGATGATGGTGAGTCTCTATTTCCAGATT ACAAAGGACGCACGTTCCTGAGACATTTAACTCCCAACGCCTCAAGCGAT CCTTGGTTGGCAGTCTTCTCCGCAAAGCCAGCCATGATATAAACACATTA CGTGGAATATGTTCCTTGAACCAAATAGTTTTATGCCAATATTTGTTGTT GATAGTGTTTATATTCTTTTCTGACATTAGTATCCATATTTTTTAGTAAA CTGATCTAAAGAGATTAGTTTGTGGAGCTAACCAAACGAGGATTATAGTG TTTACTTTGGAAAAAGTAATAGGTTGAATGATAAATGGCGTGCATGCTTT TTCACATGGAAATCTGCACATATATTAAAATTGTAAGATTTGAATCATAG AGAAAATATAGTGCATATGACTGAAGTTGGTCCATTCCGAAACTAAAGAT GGCTAAAATTCTTCTTTGTCAAAATGCATAGATGTGAATCTTATATGAAT AGAGTTCTCCATTGCTTATAGCAGTGTAATAAACTCCGTGTGTAAAAGAT AAAAAATGTTATATAAGTGAAAACAAAAATTATGATTTTTTTTCTTGTGC CTATAGGCTCTTCGTAATTTGAAGAAGAAAGAACATATTGTGTCAAAATC TTTGGCTCAGTCAAATTTTATCCAGTTGTTTATAAAACTGTTGTTATCTG ATTCATGTAATTTTTCAGTGTTGATTTAAAAGCCCAAAAGACCCATCTAT ACTGACTTTTTGATATATATTTTTCTGTAATTTGAATTTAAAAATAGATA AAACTTTCGATAAGTTATGTAAACTCAGAACAAGTATTTAGCTTTAGAAA GCATTTACATGTTTCAAACTTATAATATATACATATATAATGTTTAAAAT TATGCATATAAAATCAGTGTAAAATGTGCTTGAATATGTTTCTCTTCTTT AATGTGTTAATAGTACTATATATAACATTATTTTAAAATTTCAAAAAGTT TATGTCACATACAAAAAACCATCAATAAAAATATAATTACAACAAAAAAA TGAAAAATTATAAACATATAAATTTAAATTAAGAAAAACTAACATTGGAA AAACAAGAAGTTAATGTAAAAGAAAAAAACCGACAAATAATATTATAAAT AATATAAATTTATAAGACACAATCCGCGCGAAGCGCGGAAAAAATCTCTA GTTAATATAAACGCTGCTCTATTAATTAATCATCAGATGTTACTGGGGTT ACTGTTTCGAAAGCCTAGCGACGGAAGATCCAGGAAGAGCTTATGGGGAA GATATACATCACGTGGATGCAAACGTTGAATTTGTATCTGTTGTCAAGAC TAAACTCGGAGCTCACCGTGTTCTCATGGGTGCTGAAATGGATTGCTGTG ACGAAACTGATGAAGGAAGGAGGATTTATATAGAGTTGAAAACATCTCGC GAGGTATGCCACTTAATGCTCTATAGTTTTCCTTAAAGCTCCATTGTTAC CTCAGCTTCTATGTTTTCATTGCCTATTGCTTACACTCTTTAGTTGGATG ATCGTACCGTAGAGAGATTTGAGAGAGAGAAGCTGCTTAAATTCTGGGTA AGCAATGATATCTCACGAGTCTTTGTTTCTCGTTGTGGATTCTTAGAAAC AACTATGAAACTATTGCTGCAGATACAATCATTTGTAGCAGGAGTGCCAT ATATTCTCGTTGGATATAGGTAAAAAACCCATCAAACGGTTTGGGCTTAT AAATTCATGAGTTTCTCCTTTTCGAGATTCAAGTAAACATTTCCATTACT TGGTTGTAGAGACGATGGAGGGAGGCTAGTACGCACAGAGAGACTGAGAA CAAAAGATATCGCACACAGAGCCAGACTGAAAAACTATTGGCAGGTCAGT GTTGTATCCACTAAACTCTCATTATATATAATCCAAGTCTTATTAAAACT AAACACAATTGAGTTTTTTTGGGAGAATAGGGAGGAGTGTGTTTGGCATT TGCTGATGAGGTTCTTTGCTGGCTTTACGGCACTGTTAAAGAGAGTAAGT CTTTTATTTGTGTCTCTCTACATAGAAAGAAACAATGCAAGACAAACATC CTTTCAAAATAATATATATATATTTCCGGAAAAATGTGTGTGCAGACGAA GATTACACACTACAGTTCGTGCATCCATTCATGAGGCTAGAGCTTCTTCA AGCTCAGTCTTGTCCTGACGCCATCACTAATCATGTTCACCTTCTTCAAC ATCCTTCATCACCACCACCACCTCAGTAACTCTTTAATGTA
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Coding sequence (CDS) from alignment at westarv0_A01:486530..491620+

>BnaA01T0008000WE ID=BnaA01T0008000WE|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=CDS|length=1605bp|location=Sequence derived from alignment at westarv0_A01:486530..491620+ (Brassica napus Westar)
ATGGATATACCGCCGATGAAAAACCCAATGGACGACTTGTTCGGCGAAGA
CTCCGACAACGACTCACGATCCTCGCTTTCGAAATCCTCCTCTTCCGGCA
ATGCTTCTTCCTCCTCCTCGTCTGGCTCAGCTTCCTCTTCCGGAGCTTCT
TCCTCTAAAGGCGGAGATGGAGACGGTGGTGGTGCTGATTCCAGCAGCTC
AAGCGATAGCGGAAGCAGCGGCGGGAGAGAAGACCATGGAGGTGATAGCT
ATAGGAGCAACGATAATGTAGATAGTGGAAGCTACCCTTACGAAGAAGAG
GAAGATGATGAGAGAGATCTTTTTGGGTCTGATAATGAAGACTACACTAA
GACTCCTGCTTTAAGCACTTACTCAATCCCTGTTTTGCCTGCGGGATGGA
GCAGTGACAACAACGGTGGGAGAGGAGGAACGGGACGTGGGCGTTGGGGA
AATGGGAGAGGAGGAGCTGGGCTTCTTCCTCGCCCTGGGCCTTTCCCTGG
AGGACGTGAAGGCCGCGGTGGGTTTGGTGGGAGATACCAGAATTATCAGC
GTGATGAGCGGTTTGTTTCTGAGCTTAAACTTTCGAAAAGCAAAGAGACA
TTGTCTAGAAAATCCACCGTCTTTCAGGAGCCATGTGAGCTTACTAGCTA
CAGTCGTGTAGAAGGTGGAGAAGTGTTCTTTGATGAGCGAGGTTTGAGGC
TTTTCAAGCGTCATGTTTCTGAAGACATTGGAGCGGATTTAAATCAAGGT
TATGATACTTTTATTGAGAAAATAGATCTGGGCTCTGAGGGCTTTGGTGA
CTTTCTTGCCAGCATTAGAGCAAAAAACATTTCGTTGGAGAACATTCATT
TTGTGACATTCCGTAATAATCTAAACAAGATACTGGGTGCTGCTTATAAC
CGGAATGAACCGTGGGAGATGGGTGTGCATAAGAGGAACGGGACCATTTA
TCTTGATGTGCATAAGCTGCCTGAAAGGCCACAGAGTGACTTAGATCGCC
GCAGATGTTACTGGGGTTACTGTTTCGAAAGCCTAGCGACGGAAGATCCA
GGAAGAGCTTATGGGGAAGATATACATCACGTGGATGCAAACGTTGAATT
TGTATCTGTTGTCAAGACTAAACTCGGAGCTCACCGTGTTCTCATGGGTG
CTGAAATGGATTGCTGTGACGAAACTGATGAAGGAAGGAGGATTTATATA
GAGTTGAAAACATCTCGCGAGTTGGATGATCGTACCGTAGAGAGATTTGA
GAGAGAGAAGCTGCTTAAATTCTGGATACAATCATTTGTAGCAGGAGTGC
CATATATTCTCGTTGGATATAGAGACGATGGAGGGAGGCTAGTACGCACA
GAGAGACTGAGAACAAAAGATATCGCACACAGAGCCAGACTGAAAAACTA
TTGGCAGGGAGGAGTGTGTTTGGCATTTGCTGATGAGGTTCTTTGCTGGC
TTTACGGCACTGTTAAAGAGAACGAAGATTACACACTACAGTTCGTGCAT
CCATTCATGAGGCTAGAGCTTCTTCAAGCTCAGTCTTGTCCTGACGCCAT
CACTAATCATGTTCACCTTCTTCAACATCCTTCATCACCACCACCACCTC
AGTAA
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