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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BnaA01G0008000WE | BnaA01G0008000WE | Brassica napus Westar | gene | westarv0_A01 486530..491620 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0008000WE.utr5p1 | BnaA01T0008000WE.utr5p1 | Brassica napus Westar | five_prime_UTR | westarv0_A01 486530..486548 + |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BnaA01T0008000WE | cds.BnaA01T0008000WE | Brassica napus Westar | CDS | westarv0_A01 486549..486930 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0008000WE.utr3p1 | BnaA01T0008000WE.utr3p1 | Brassica napus Westar | three_prime_UTR | westarv0_A01 491609..491620 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0008000WE ID=BnaA01T0008000WE|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=mRNA|length=1636bp|location=Sequence derived from alignment at westarv0_A01:486530..491620+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
CAAAACCTTGGTGTGAGATATGGATATACCGCCGATGAAAAACCCAATGG ACGACTTGTTCGGCGAAGACTCCGACAACGACTCACGATCCTCGCTTTCG AAATCCTCCTCTTCCGGCAATGCTTCTTCCTCCTCCTCGTCTGGCTCAGC TTCCTCTTCCGGAGCTTCTTCCTCTAAAGGCGGAGATGGAGACGGTGGTG GTGCTGATTCCAGCAGCTCAAGCGATAGCGGAAGCAGCGGCGGGAGAGAA GACCATGGAGGTGATAGCTATAGGAGCAACGATAATGTAGATAGTGGAAG CTACCCTTACGAAGAAGAGGAAGATGATGAGAGAGATCTTTTTGGGTCTG ATAATGAAGACTACACTAAGACTCCTGCTTTAAGCACTTACTCAATCCCT GTTTTGCCTGCGGGATGGAGCAGTGACAACAACGGTGGGAGAGGAGGAAC GGGACGTGGGCGTTGGGGAAATGGGAGAGGAGGAGCTGGGCTTCTTCCTC GCCCTGGGCCTTTCCCTGGAGGACGTGAAGGCCGCGGTGGGTTTGGTGGG AGATACCAGAATTATCAGCGTGATGAGCGGTTTGTTTCTGAGCTTAAACT TTCGAAAAGCAAAGAGACATTGTCTAGAAAATCCACCGTCTTTCAGGAGC CATGTGAGCTTACTAGCTACAGTCGTGTAGAAGGTGGAGAAGTGTTCTTT GATGAGCGAGGTTTGAGGCTTTTCAAGCGTCATGTTTCTGAAGACATTGG AGCGGATTTAAATCAAGGTTATGATACTTTTATTGAGAAAATAGATCTGG GCTCTGAGGGCTTTGGTGACTTTCTTGCCAGCATTAGAGCAAAAAACATT TCGTTGGAGAACATTCATTTTGTGACATTCCGTAATAATCTAAACAAGAT ACTGGGTGCTGCTTATAACCGGAATGAACCGTGGGAGATGGGTGTGCATA AGAGGAACGGGACCATTTATCTTGATGTGCATAAGCTGCCTGAAAGGCCA CAGAGTGACTTAGATCGCCGCAGATGTTACTGGGGTTACTGTTTCGAAAG CCTAGCGACGGAAGATCCAGGAAGAGCTTATGGGGAAGATATACATCACG TGGATGCAAACGTTGAATTTGTATCTGTTGTCAAGACTAAACTCGGAGCT CACCGTGTTCTCATGGGTGCTGAAATGGATTGCTGTGACGAAACTGATGA AGGAAGGAGGATTTATATAGAGTTGAAAACATCTCGCGAGTTGGATGATC GTACCGTAGAGAGATTTGAGAGAGAGAAGCTGCTTAAATTCTGGATACAA TCATTTGTAGCAGGAGTGCCATATATTCTCGTTGGATATAGAGACGATGG AGGGAGGCTAGTACGCACAGAGAGACTGAGAACAAAAGATATCGCACACA GAGCCAGACTGAAAAACTATTGGCAGGGAGGAGTGTGTTTGGCATTTGCT GATGAGGTTCTTTGCTGGCTTTACGGCACTGTTAAAGAGAACGAAGATTA CACACTACAGTTCGTGCATCCATTCATGAGGCTAGAGCTTCTTCAAGCTC AGTCTTGTCCTGACGCCATCACTAATCATGTTCACCTTCTTCAACATCCT TCATCACCACCACCACCTCAGTAACTCTTTAATGTA back to topprotein sequence of BnaA01T0008000WE >BnaA01T0008000WE-P ID=BnaA01T0008000WE-P|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=polypeptide|length=535bp
MDIPPMKNPMDDLFGEDSDNDSRSSLSKSSSSGNASSSSSSGSASSSGAS SSKGGDGDGGGADSSSSSDSGSSGGREDHGGDSYRSNDNVDSGSYPYEEE EDDERDLFGSDNEDYTKTPALSTYSIPVLPAGWSSDNNGGRGGTGRGRWG NGRGGAGLLPRPGPFPGGREGRGGFGGRYQNYQRDERFVSELKLSKSKET LSRKSTVFQEPCELTSYSRVEGGEVFFDERGLRLFKRHVSEDIGADLNQG YDTFIEKIDLGSEGFGDFLASIRAKNISLENIHFVTFRNNLNKILGAAYN RNEPWEMGVHKRNGTIYLDVHKLPERPQSDLDRRRCYWGYCFESLATEDP GRAYGEDIHHVDANVEFVSVVKTKLGAHRVLMGAEMDCCDETDEGRRIYI ELKTSRELDDRTVERFEREKLLKFWIQSFVAGVPYILVGYRDDGGRLVRT ERLRTKDIAHRARLKNYWQGGVCLAFADEVLCWLYGTVKENEDYTLQFVH PFMRLELLQAQSCPDAITNHVHLLQHPSSPPPPQ. back to topmRNA from alignment at westarv0_A01:486530..491620+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0008000WE ID=BnaA01T0008000WE|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=mRNA|length=5091bp|location=Sequence derived from alignment at westarv0_A01:486530..491620+ (Brassica napus Westar) CAAAACCTTGGTGTGAGATATGGATATACCGCCGATGAAAAACCCAATGG
ACGACTTGTTCGGCGAAGACTCCGACAACGACTCACGATCCTCGCTTTCG
AAATCCTCCTCTTCCGGCAATGCTTCTTCCTCCTCCTCGTCTGGCTCAGC
TTCCTCTTCCGGAGCTTCTTCCTCTAAAGGCGGAGATGGAGACGGTGGTG
GTGCTGATTCCAGCAGCTCAAGCGATAGCGGAAGCAGCGGCGGGAGAGAA
GACCATGGAGGTGATAGCTATAGGAGCAACGATAATGTAGATAGTGGAAG
CTACCCTTACGAAGAAGAGGAAGATGATGAGAGAGATCTTTTTGGGTCTG
ATAATGAAGACTACACTAAGACTCCTGCTTTAAGCACTTACTCAATCCCT
GGTACGTTTTGGCTCTCAGTCTCTATGTAAAGGTTGAACCTTTTTTGTTT
GTGTACTTACTGGTTGCGACTGAATTGGCTTCTGGGTTTTGTCTGGATAC
TAAATTTGTACTTTCTATTTGTGGCTCAGTCTCTATGTAAATGTAAAAGT
GGAACCTTTTTGTTGTCTACTTACAAAATTGTGTGTTTGGGCTTTTGGGG
TTTTGTCTGGATAGTACTGATGTGAGATATGACAGTTTTGCCTGCGGGAT
GGAGCAGTGACAACAACGGTGGGAGAGGAGGAACGGGACGTGGGCGTTGG
GGAAATGGGAGAGGAGGAGCTGGGCTTCTTCCTCGCCCTGGGCCTTTCCC
TGGAGGACGTGAAGGCCGCGGTGGGTTTGGTGGGAGATACCAGAATTATC
AGCGTGATGAGCGGTTTGTTTCTGAGCTTAAACTTTCGAAAAGCAAAGAG
ACATTGTCTAGAAAATCCACCGTCTTTCAGGAGGTAACGTTTACATTTGT
TTTAGATTATTTAGAAGCAGAATCGTTTTGCTTATTGATAGGTAACACGT
TTCTGCATGTTTGATATTGACAGCCATGTGAGCTTACTAGCTACAGTCGT
GTAGAAGGTGGAGAAGTGTTCTTTGATGAGCGAGGTTTGGTGAGAGTTTT
TGGTATTGTTGTTCTTTATGATTCTCGCTTGTTCTTTTCCTCATCCCACT
AAACTATCTATTTGATTGGCTTGTAATGTATATACGCAAGCACATACATA
TGTGAAATATACAAATCGACAATACCTTAATATGTATCCACTTTGTTATT
GTTTTCCAGAGGCTTTTCAAGCGTCATGTTTCTGAAGACATTGGAGCGGA
TTTAAATCAAGGTTATGATACTTTTATTGAGAAAATAGGTAATGGTTATC
ATATTTTGTCAGAACTATTAGATCATGTGCAAGATGTCGAAGTTTGAGGT
ATTAAGCTGCTGATTGTTCTCTATGTTGAGGCAGATCTGGGCTCTGAGGG
CTTTGGTGACTTTCTTGCCAGCATTAGAGCAAAAAACATTTCGTTGGAGA
ACATTCATTTTGTGGTACGAAGTGCTTGTCTATCAGTCCATTTCACTGCC
AGTTTCATTACTATTTGTAGACATGCTCCTTAATGCTCTCTTTTTTCTTT
TTTTTTTTTGCTTTGTTTTCGACAGACATTCCGTAATAATCTAAACAAGG
TTAAGGAAGATCCCCCAACATTTATATTATGCTTTCTTCTTGAAGCCAAT
TAACTCCATAGTTCTGTTTGCTAAATCACTCGCTTTCCTTTTGGTATATC
TGTTTCAGATACTGGGTGCTGCTTATAACCGGAATGAACCGTGGGAGATG
GGTGTGCATAAGAGGAACGGGACCATTTATCTTGATGTGCATAAGCTGCC
TGAAAGGCCACAGAGTGACTTAGATCGCCGCAGGTAAGTCTTCATTTTTA
CTTGTTTTAACGGAAAAAAAAAGGGTGATTCTACTAATCCTACTATATAA
AAGGAACTAAATTCAAGGCTTTTGGGACTATCCACCTCAGCCAAAATATT
CTCATCAATAAAGAATTAGAAATAGATGTCATTTAGAAGATAATTAACTA
ACATATGACTTTTAATATTTCTAGAAATTTCATATTTGTAACTGTTAATT
TATTAATAGAATCATATATCTATATTGAATTATGTTCTATTTTTAATCAT
TAGATTTCAAGGGTAAATAAAATATTAATTTATAATATATATATAGTTTA
TAACTTTATATTGTAGTTATAAATAAAGAGAAATAACCAGGGAGGATGAA
AAATCTCATGTAAAATTATATAATTAAAATGGTAAAATGGTGAGTATGAT
GAGGTGAATCTAAGAAAATTTGTTGTACAAATTATGATGTTTTCTTCGTC
CACTAAAATTATTTAAAATAAAATATATATTCACATAAATAAGTCAATAT
TTGTTTTTTTTTTTTGGTAAGATGTTAAGATTATCATTTTTTGAAAGGTT
ACACTGTTGTTTTTAAACAACCTATTACAACAAGGAAACAAAAACAACCA
CCAACAACTCAAGGTAAAAAAAGCCTTAAAGAGGTTTTATACAAGAAATA
TAAAAAAGAAGTAGAGAAGAGGAGAAAGAAGAACTTGCCGAGTAAGAGAG
GAGACGGTCACGCATTATACGGTCGAGAGAGGCAAGGATGACTGATGAAG
GTGAAGAGACAGCTGTGAACACACGAGCATTACGCTCTTTCCACAGCAGG
TAGATAGATGACTGAAAGTAGAGCTTGATAACTGAAGTAGCATGCGCATC
TGCGTTGACGCGAGGTTGATTGATCCAGGCTGCAACATACTGTAGATCAG
CCGGAGGAGAAATCCAAACTTCAGCAGCAAAAGGCTCCCATATCAAACGA
GATAAAGAGCACTCAAAGAAGAGATGATGGTGAGTCTCTATTTCCAGATT
ACAAAGGACGCACGTTCCTGAGACATTTAACTCCCAACGCCTCAAGCGAT
CCTTGGTTGGCAGTCTTCTCCGCAAAGCCAGCCATGATATAAACACATTA
CGTGGAATATGTTCCTTGAACCAAATAGTTTTATGCCAATATTTGTTGTT
GATAGTGTTTATATTCTTTTCTGACATTAGTATCCATATTTTTTAGTAAA
CTGATCTAAAGAGATTAGTTTGTGGAGCTAACCAAACGAGGATTATAGTG
TTTACTTTGGAAAAAGTAATAGGTTGAATGATAAATGGCGTGCATGCTTT
TTCACATGGAAATCTGCACATATATTAAAATTGTAAGATTTGAATCATAG
AGAAAATATAGTGCATATGACTGAAGTTGGTCCATTCCGAAACTAAAGAT
GGCTAAAATTCTTCTTTGTCAAAATGCATAGATGTGAATCTTATATGAAT
AGAGTTCTCCATTGCTTATAGCAGTGTAATAAACTCCGTGTGTAAAAGAT
AAAAAATGTTATATAAGTGAAAACAAAAATTATGATTTTTTTTCTTGTGC
CTATAGGCTCTTCGTAATTTGAAGAAGAAAGAACATATTGTGTCAAAATC
TTTGGCTCAGTCAAATTTTATCCAGTTGTTTATAAAACTGTTGTTATCTG
ATTCATGTAATTTTTCAGTGTTGATTTAAAAGCCCAAAAGACCCATCTAT
ACTGACTTTTTGATATATATTTTTCTGTAATTTGAATTTAAAAATAGATA
AAACTTTCGATAAGTTATGTAAACTCAGAACAAGTATTTAGCTTTAGAAA
GCATTTACATGTTTCAAACTTATAATATATACATATATAATGTTTAAAAT
TATGCATATAAAATCAGTGTAAAATGTGCTTGAATATGTTTCTCTTCTTT
AATGTGTTAATAGTACTATATATAACATTATTTTAAAATTTCAAAAAGTT
TATGTCACATACAAAAAACCATCAATAAAAATATAATTACAACAAAAAAA
TGAAAAATTATAAACATATAAATTTAAATTAAGAAAAACTAACATTGGAA
AAACAAGAAGTTAATGTAAAAGAAAAAAACCGACAAATAATATTATAAAT
AATATAAATTTATAAGACACAATCCGCGCGAAGCGCGGAAAAAATCTCTA
GTTAATATAAACGCTGCTCTATTAATTAATCATCAGATGTTACTGGGGTT
ACTGTTTCGAAAGCCTAGCGACGGAAGATCCAGGAAGAGCTTATGGGGAA
GATATACATCACGTGGATGCAAACGTTGAATTTGTATCTGTTGTCAAGAC
TAAACTCGGAGCTCACCGTGTTCTCATGGGTGCTGAAATGGATTGCTGTG
ACGAAACTGATGAAGGAAGGAGGATTTATATAGAGTTGAAAACATCTCGC
GAGGTATGCCACTTAATGCTCTATAGTTTTCCTTAAAGCTCCATTGTTAC
CTCAGCTTCTATGTTTTCATTGCCTATTGCTTACACTCTTTAGTTGGATG
ATCGTACCGTAGAGAGATTTGAGAGAGAGAAGCTGCTTAAATTCTGGGTA
AGCAATGATATCTCACGAGTCTTTGTTTCTCGTTGTGGATTCTTAGAAAC
AACTATGAAACTATTGCTGCAGATACAATCATTTGTAGCAGGAGTGCCAT
ATATTCTCGTTGGATATAGGTAAAAAACCCATCAAACGGTTTGGGCTTAT
AAATTCATGAGTTTCTCCTTTTCGAGATTCAAGTAAACATTTCCATTACT
TGGTTGTAGAGACGATGGAGGGAGGCTAGTACGCACAGAGAGACTGAGAA
CAAAAGATATCGCACACAGAGCCAGACTGAAAAACTATTGGCAGGTCAGT
GTTGTATCCACTAAACTCTCATTATATATAATCCAAGTCTTATTAAAACT
AAACACAATTGAGTTTTTTTGGGAGAATAGGGAGGAGTGTGTTTGGCATT
TGCTGATGAGGTTCTTTGCTGGCTTTACGGCACTGTTAAAGAGAGTAAGT
CTTTTATTTGTGTCTCTCTACATAGAAAGAAACAATGCAAGACAAACATC
CTTTCAAAATAATATATATATATTTCCGGAAAAATGTGTGTGCAGACGAA
GATTACACACTACAGTTCGTGCATCCATTCATGAGGCTAGAGCTTCTTCA
AGCTCAGTCTTGTCCTGACGCCATCACTAATCATGTTCACCTTCTTCAAC
ATCCTTCATCACCACCACCACCTCAGTAACTCTTTAATGTA back to topCoding sequence (CDS) from alignment at westarv0_A01:486530..491620+ >BnaA01T0008000WE ID=BnaA01T0008000WE|Name=BnaA01T0008000WE|organism=Brassica napus Westar|type=CDS|length=1605bp|location=Sequence derived from alignment at westarv0_A01:486530..491620+ (Brassica napus Westar) ATGGATATACCGCCGATGAAAAACCCAATGGACGACTTGTTCGGCGAAGA CTCCGACAACGACTCACGATCCTCGCTTTCGAAATCCTCCTCTTCCGGCA ATGCTTCTTCCTCCTCCTCGTCTGGCTCAGCTTCCTCTTCCGGAGCTTCT TCCTCTAAAGGCGGAGATGGAGACGGTGGTGGTGCTGATTCCAGCAGCTC AAGCGATAGCGGAAGCAGCGGCGGGAGAGAAGACCATGGAGGTGATAGCT ATAGGAGCAACGATAATGTAGATAGTGGAAGCTACCCTTACGAAGAAGAG GAAGATGATGAGAGAGATCTTTTTGGGTCTGATAATGAAGACTACACTAA GACTCCTGCTTTAAGCACTTACTCAATCCCTGTTTTGCCTGCGGGATGGA GCAGTGACAACAACGGTGGGAGAGGAGGAACGGGACGTGGGCGTTGGGGA AATGGGAGAGGAGGAGCTGGGCTTCTTCCTCGCCCTGGGCCTTTCCCTGG AGGACGTGAAGGCCGCGGTGGGTTTGGTGGGAGATACCAGAATTATCAGC GTGATGAGCGGTTTGTTTCTGAGCTTAAACTTTCGAAAAGCAAAGAGACA TTGTCTAGAAAATCCACCGTCTTTCAGGAGCCATGTGAGCTTACTAGCTA CAGTCGTGTAGAAGGTGGAGAAGTGTTCTTTGATGAGCGAGGTTTGAGGC TTTTCAAGCGTCATGTTTCTGAAGACATTGGAGCGGATTTAAATCAAGGT TATGATACTTTTATTGAGAAAATAGATCTGGGCTCTGAGGGCTTTGGTGA CTTTCTTGCCAGCATTAGAGCAAAAAACATTTCGTTGGAGAACATTCATT TTGTGACATTCCGTAATAATCTAAACAAGATACTGGGTGCTGCTTATAAC CGGAATGAACCGTGGGAGATGGGTGTGCATAAGAGGAACGGGACCATTTA TCTTGATGTGCATAAGCTGCCTGAAAGGCCACAGAGTGACTTAGATCGCC GCAGATGTTACTGGGGTTACTGTTTCGAAAGCCTAGCGACGGAAGATCCA GGAAGAGCTTATGGGGAAGATATACATCACGTGGATGCAAACGTTGAATT TGTATCTGTTGTCAAGACTAAACTCGGAGCTCACCGTGTTCTCATGGGTG CTGAAATGGATTGCTGTGACGAAACTGATGAAGGAAGGAGGATTTATATA GAGTTGAAAACATCTCGCGAGTTGGATGATCGTACCGTAGAGAGATTTGA GAGAGAGAAGCTGCTTAAATTCTGGATACAATCATTTGTAGCAGGAGTGC CATATATTCTCGTTGGATATAGAGACGATGGAGGGAGGCTAGTACGCACA GAGAGACTGAGAACAAAAGATATCGCACACAGAGCCAGACTGAAAAACTA TTGGCAGGGAGGAGTGTGTTTGGCATTTGCTGATGAGGTTCTTTGCTGGC TTTACGGCACTGTTAAAGAGAACGAAGATTACACACTACAGTTCGTGCAT CCATTCATGAGGCTAGAGCTTCTTCAAGCTCAGTCTTGTCCTGACGCCAT CACTAATCATGTTCACCTTCTTCAACATCCTTCATCACCACCACCACCTC AGTAA back to top
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