BnaA01T0006400WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0006400WE
Unique Name	BnaA01T0006400WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:375661..377596 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0006400WE	BnaA01G0006400WE	Brassica napus Westar	gene	westarv0_A01 375661..377596 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0006400WE	BnaA01T0006400WE-P	Brassica napus Westar	polypeptide	westarv0_A01 375661..377596 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0006400WE.exon7	BnaA01T0006400WE.exon7	Brassica napus Westar	exon	westarv0_A01 375661..375872 -
BnaA01T0006400WE.exon6	BnaA01T0006400WE.exon6	Brassica napus Westar	exon	westarv0_A01 375950..376072 -
BnaA01T0006400WE.exon5	BnaA01T0006400WE.exon5	Brassica napus Westar	exon	westarv0_A01 376155..376220 -
BnaA01T0006400WE.exon4	BnaA01T0006400WE.exon4	Brassica napus Westar	exon	westarv0_A01 376311..376380 -
BnaA01T0006400WE.exon3	BnaA01T0006400WE.exon3	Brassica napus Westar	exon	westarv0_A01 376455..376758 -
BnaA01T0006400WE.exon2	BnaA01T0006400WE.exon2	Brassica napus Westar	exon	westarv0_A01 376850..376994 -
BnaA01T0006400WE.exon1	BnaA01T0006400WE.exon1	Brassica napus Westar	exon	westarv0_A01 377080..377596 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0006400WE	cds.BnaA01T0006400WE	Brassica napus Westar	CDS	westarv0_A01 377080..377596 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:375661..377596-
coding sequence from alignment at westarv0_A01:375661..377596-

spliced messenger RNA

>BnaA01T0006400WE ID=BnaA01T0006400WE|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=mRNA|length=1437bp|location=Sequence derived from alignment at westarv0_A01:375661..377596- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTTCTACACCTCCTAGATCCTCCTCCCGTCTCGCTCGGAGAAT
CAACACCACCACTCTCGTCAAAACCAACGGAGACTCACCAATCCCCTCTC
TCGATTTAGTCCTATCCTCTCCCAAGAGCATCGACACTCCTCCTTACCCG
TCTCCCGCTTCACTATACTCACCGTCTTCCCCTGTTACGCTCCGAGAGAT
TCTCCTCTTGTCTCCTTCTCCTCTCCGGAAATCGAGAACCCGTTTAGCGA
ATCGGTTCGAGATGGAGGCCGCGGAGGCTGCGAGGCGGTGCAAGACGAAG
GGAGGGCAGAACGGTCTTTTGGGTAGTGCGTCGCCGAGGAGTTGCCGGAG
GTCGAGGCGGAGGTCGGAGGTGGTGGTGGTGGAGGAGGAGACGAAGCCTG
TTGTTGTTGTGTTGAATGATGAGAAGGCTGCGAAACAGAGGAAGCATAAG
AAGACGGGTCGGTCTAAGAAGGAGAAACAGAGTTCGTTGCCTTCTCCCTC
TTCAGATCTGAGTAAAGATGTATGTGAAGGTGATTTGGAGAGGATTAGAG
AGAATATCAACGATTTGATCATGTGGAGAGATGTTGCGAAGTCGACACTT
TGGTTTGGTTTTGGTTGTTTGTGTTTCTTGTCTTCTTGCTTTGCTAAAGG
GTTTAGCTTTAGTGTTTTCTCAGCCGTCTCTCATGTTGGACTTCTGTATC
TTGGTGTATCGTTTTTGTCACACTCTCTTCGCCAAAGGTACGATCTTTTT
TTATCCGGGGTTATGCTTATTGTACATGAGATGAAACAGCTTGTAATTGA
AGTTTTGATACATCTTAAAAGGCTAACTGAAGAAGAAGCGCAGAGAGAGG
TTAAAGTGAGTGAAGAGGATGTGTTACGAGTAGCAAGAAGAATGCTTCCC
ATCACCAATTTGGCCATTTCAAAGATGACCCAGCTTTTCTCTGGCGAACC
AGCAATGACACTCAAAGTGGCACCCTTTGTTCTAATAGGAGCGGAGTATG
GTTACCTCATAACATTGTGGAGGCTATTTGCTTTAGGTTTCTTCCTCAGC
TTCACCCTCCCAAAACTATACTCATGTTATGCTAACCAGATTAACCAAAA
AGTTGAAAATGCACAAAAGAGAATAGTTGAAGCGTGGGGAATATGCACAC
ACAAGAAGTTCGTGGCAGGCTCTATGATCACTGCCTTCTGGAACCTGACT
AGTCTCAAGATCCGTTTCTTCACAGTGTTCATCATAGTGGTAGTCATCAG
ATACAAAAGGCAGAATGTACAGTTAGATTCCGAAGAAGATCATGAGGAGA
AGCAACAAGAAGAACAAACTCACACGGAGCAACCGGAGGAGAAGTCAGCA
TCGCCGCCACCGTCTCCACCTCAGCCAATAGAAGAAGAGCAAGCATTAGT
AGTGGTGGCTGCAGAAACCGAAGCACCACCAAAGTAG

protein sequence of BnaA01T0006400WE

>BnaA01T0006400WE-P ID=BnaA01T0006400WE-P|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=polypeptide|length=479bp
MDLSTPPRSSSRLARRINTTTLVKTNGDSPIPSLDLVLSSPKSIDTPPYP
SPASLYSPSSPVTLREILLLSPSPLRKSRTRLANRFEMEAAEAARRCKTK
GGQNGLLGSASPRSCRRSRRRSEVVVVEEETKPVVVVLNDEKAAKQRKHK
KTGRSKKEKQSSLPSPSSDLSKDVCEGDLERIRENINDLIMWRDVAKSTL
WFGFGCLCFLSSCFAKGFSFSVFSAVSHVGLLYLGVSFLSHSLRQRYDLF
LSGVMLIVHEMKQLVIEVLIHLKRLTEEEAQREVKVSEEDVLRVARRMLP
ITNLAISKMTQLFSGEPAMTLKVAPFVLIGAEYGYLITLWRLFALGFFLS
FTLPKLYSCYANQINQKVENAQKRIVEAWGICTHKKFVAGSMITAFWNLT
SLKIRFFTVFIIVVVIRYKRQNVQLDSEEDHEEKQQEEQTHTEQPEEKSA
SPPPSPPQPIEEEQALVVVAAETEAPPK.

mRNA from alignment at westarv0_A01:375661..377596-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0006400WE ID=BnaA01T0006400WE|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=mRNA|length=1936bp|location=Sequence derived from alignment at westarv0_A01:375661..377596- (Brassica napus Westar)
ATGGATCTTTCTACACCTCCTAGATCCTCCTCCCGTCTCGCTCGGAGAAT
CAACACCACCACTCTCGTCAAAACCAACGGAGACTCACCAATCCCCTCTC
TCGATTTAGTCCTATCCTCTCCCAAGAGCATCGACACTCCTCCTTACCCG
TCTCCCGCTTCACTATACTCACCGTCTTCCCCTGTTACGCTCCGAGAGAT
TCTCCTCTTGTCTCCTTCTCCTCTCCGGAAATCGAGAACCCGTTTAGCGA
ATCGGTTCGAGATGGAGGCCGCGGAGGCTGCGAGGCGGTGCAAGACGAAG
GGAGGGCAGAACGGTCTTTTGGGTAGTGCGTCGCCGAGGAGTTGCCGGAG
GTCGAGGCGGAGGTCGGAGGTGGTGGTGGTGGAGGAGGAGACGAAGCCTG
TTGTTGTTGTGTTGAATGATGAGAAGGCTGCGAAACAGAGGAAGCATAAG
AAGACGGGTCGGTCTAAGAAGGAGAAACAGAGTTCGTTGCCTTCTCCCTC
TTCAGATCTGAGTAAAGGTCCTAACTTTAATTATTTCAATTTTTTATTTG
TTCTGATATGATGTTTGTAGTTTAATGACTGTGTGTGGTTTTTTTTTTGT
AGATGTATGTGAAGGTGATTTGGAGAGGATTAGAGAGAATATCAACGATT
TGATCATGTGGAGAGATGTTGCGAAGTCGACACTTTGGTTTGGTTTTGGT
TGTTTGTGTTTCTTGTCTTCTTGCTTTGCTAAAGGGTTTAGCTTTAGGTA
TGTACATCGAGTTCACTCTCTAGATTTTGCTCATTTCTAGCTTCAGTCAT
TTGTCACATTCATGATGAAACCTTTGTGTGTTGTAAAGTGTTTTCTCAGC
CGTCTCTCATGTTGGACTTCTGTATCTTGGTGTATCGTTTTTGTCACACT
CTCTTCGCCAAAGGTACGATCTTTTTTTATCCGGGGTTATGCTTATTGTA
CATGAGATGAAACAGCTTGTAATTGAAGTTTTGATACATCTTAAAAGGCT
AACTGAAGAAGAAGCGCAGAGAGAGGTTAAAGTGAGTGAAGAGGATGTGT
TACGAGTAGCAAGAAGAATGCTTCCCATCACCAATTTGGCCATTTCAAAG
ATGACCCAGCTTTTCTCTGGCGAACCAGCAATGACACTCAAAGTAGAGTA
AACACTTCTATGAATGTGATTTTTTTATTTTGTTGAGCTTCTCCTTATGT
TACAACTTGGTTTCAGGTGGCACCCTTTGTTCTAATAGGAGCGGAGTATG
GTTACCTCATAACATTGTGGAGGCTATTTGCTTTAGGTATGCTTGCTAAC
AATGTTTTCAACTGATTCTTTGCGTTCTTGTAGTTGTTGTAAGTATCTAG
TAGAATTGACATTGTTATGGAAACAGGTTTCTTCCTCAGCTTCACCCTCC
CAAAACTATACTCATGTTATGCTAACCAGATTAACCAAAAAGGTAAATTC
TCTATTATCAGATCTTTTGTTGCCCTTTGATGAATAGAACGAAGTAAATG
GAAAAGCTATTTACATTTGTGTAGTTGAAAATGCACAAAAGAGAATAGTT
GAAGCGTGGGGAATATGCACACACAAGAAGTTCGTGGCAGGCTCTATGAT
CACTGCCTTCTGGAACCTGACTAGTCTCAAGATCCGTTTCTTCACAGGTT
AAAAAACTTTACCAGTTGTTGATCTGAGATTGGTGACAGAAACTGATATT
CTCTAGATATGGCGCTTTTTGCAGTGTTCATCATAGTGGTAGTCATCAGA
TACAAAAGGCAGAATGTACAGTTAGATTCCGAAGAAGATCATGAGGAGAA
GCAACAAGAAGAACAAACTCACACGGAGCAACCGGAGGAGAAGTCAGCAT
CGCCGCCACCGTCTCCACCTCAGCCAATAGAAGAAGAGCAAGCATTAGTA
GTGGTGGCTGCAGAAACCGAAGCACCACCAAAGTAG

Coding sequence (CDS) from alignment at westarv0_A01:375661..377596-

>BnaA01T0006400WE ID=BnaA01T0006400WE|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=CDS|length=1437bp|location=Sequence derived from alignment at westarv0_A01:375661..377596- (Brassica napus Westar)
ATGGATCTTTCTACACCTCCTAGATCCTCCTCCCGTCTCGCTCGGAGAAT
CAACACCACCACTCTCGTCAAAACCAACGGAGACTCACCAATCCCCTCTC
TCGATTTAGTCCTATCCTCTCCCAAGAGCATCGACACTCCTCCTTACCCG
TCTCCCGCTTCACTATACTCACCGTCTTCCCCTGTTACGCTCCGAGAGAT
TCTCCTCTTGTCTCCTTCTCCTCTCCGGAAATCGAGAACCCGTTTAGCGA
ATCGGTTCGAGATGGAGGCCGCGGAGGCTGCGAGGCGGTGCAAGACGAAG
GGAGGGCAGAACGGTCTTTTGGGTAGTGCGTCGCCGAGGAGTTGCCGGAG
GTCGAGGCGGAGGTCGGAGGTGGTGGTGGTGGAGGAGGAGACGAAGCCTG
TTGTTGTTGTGTTGAATGATGAGAAGGCTGCGAAACAGAGGAAGCATAAG
AAGACGGGTCGGTCTAAGAAGGAGAAACAGAGTTCGTTGCCTTCTCCCTC
TTCAGATCTGAGTAAAGATGTATGTGAAGGTGATTTGGAGAGGATTAGAG
AGAATATCAACGATTTGATCATGTGGAGAGATGTTGCGAAGTCGACACTT
TGGTTTGGTTTTGGTTGTTTGTGTTTCTTGTCTTCTTGCTTTGCTAAAGG
GTTTAGCTTTAGTGTTTTCTCAGCCGTCTCTCATGTTGGACTTCTGTATC
TTGGTGTATCGTTTTTGTCACACTCTCTTCGCCAAAGGTACGATCTTTTT
TTATCCGGGGTTATGCTTATTGTACATGAGATGAAACAGCTTGTAATTGA
AGTTTTGATACATCTTAAAAGGCTAACTGAAGAAGAAGCGCAGAGAGAGG
TTAAAGTGAGTGAAGAGGATGTGTTACGAGTAGCAAGAAGAATGCTTCCC
ATCACCAATTTGGCCATTTCAAAGATGACCCAGCTTTTCTCTGGCGAACC
AGCAATGACACTCAAAGTGGCACCCTTTGTTCTAATAGGAGCGGAGTATG
GTTACCTCATAACATTGTGGAGGCTATTTGCTTTAGGTTTCTTCCTCAGC
TTCACCCTCCCAAAACTATACTCATGTTATGCTAACCAGATTAACCAAAA
AGTTGAAAATGCACAAAAGAGAATAGTTGAAGCGTGGGGAATATGCACAC
ACAAGAAGTTCGTGGCAGGCTCTATGATCACTGCCTTCTGGAACCTGACT
AGTCTCAAGATCCGTTTCTTCACAGTGTTCATCATAGTGGTAGTCATCAG
ATACAAAAGGCAGAATGTACAGTTAGATTCCGAAGAAGATCATGAGGAGA
AGCAACAAGAAGAACAAACTCACACGGAGCAACCGGAGGAGAAGTCAGCA
TCGCCGCCACCGTCTCCACCTCAGCCAATAGAAGAAGAGCAAGCATTAGT
AGTGGTGGCTGCAGAAACCGAAGCACCACCAAAGTAG

Orthology

View orthology data for BnaA01T0006400WE