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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BnaA01G0006400WE | BnaA01G0006400WE | Brassica napus Westar | gene | westarv0_A01 375661..377596 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BnaA01T0006400WE.exon7 | BnaA01T0006400WE.exon7 | Brassica napus Westar | exon | westarv0_A01 375661..375872 - |
BnaA01T0006400WE.exon6 | BnaA01T0006400WE.exon6 | Brassica napus Westar | exon | westarv0_A01 375950..376072 - |
BnaA01T0006400WE.exon5 | BnaA01T0006400WE.exon5 | Brassica napus Westar | exon | westarv0_A01 376155..376220 - |
BnaA01T0006400WE.exon4 | BnaA01T0006400WE.exon4 | Brassica napus Westar | exon | westarv0_A01 376311..376380 - |
BnaA01T0006400WE.exon3 | BnaA01T0006400WE.exon3 | Brassica napus Westar | exon | westarv0_A01 376455..376758 - |
BnaA01T0006400WE.exon2 | BnaA01T0006400WE.exon2 | Brassica napus Westar | exon | westarv0_A01 376850..376994 - |
BnaA01T0006400WE.exon1 | BnaA01T0006400WE.exon1 | Brassica napus Westar | exon | westarv0_A01 377080..377596 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BnaA01T0006400WE | cds.BnaA01T0006400WE | Brassica napus Westar | CDS | westarv0_A01 377080..377596 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0006400WE ID=BnaA01T0006400WE|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=mRNA|length=1437bp|location=Sequence derived from alignment at westarv0_A01:375661..377596- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGGATCTTTCTACACCTCCTAGATCCTCCTCCCGTCTCGCTCGGAGAAT CAACACCACCACTCTCGTCAAAACCAACGGAGACTCACCAATCCCCTCTC TCGATTTAGTCCTATCCTCTCCCAAGAGCATCGACACTCCTCCTTACCCG TCTCCCGCTTCACTATACTCACCGTCTTCCCCTGTTACGCTCCGAGAGAT TCTCCTCTTGTCTCCTTCTCCTCTCCGGAAATCGAGAACCCGTTTAGCGA ATCGGTTCGAGATGGAGGCCGCGGAGGCTGCGAGGCGGTGCAAGACGAAG GGAGGGCAGAACGGTCTTTTGGGTAGTGCGTCGCCGAGGAGTTGCCGGAG GTCGAGGCGGAGGTCGGAGGTGGTGGTGGTGGAGGAGGAGACGAAGCCTG TTGTTGTTGTGTTGAATGATGAGAAGGCTGCGAAACAGAGGAAGCATAAG AAGACGGGTCGGTCTAAGAAGGAGAAACAGAGTTCGTTGCCTTCTCCCTC TTCAGATCTGAGTAAAGATGTATGTGAAGGTGATTTGGAGAGGATTAGAG AGAATATCAACGATTTGATCATGTGGAGAGATGTTGCGAAGTCGACACTT TGGTTTGGTTTTGGTTGTTTGTGTTTCTTGTCTTCTTGCTTTGCTAAAGG GTTTAGCTTTAGTGTTTTCTCAGCCGTCTCTCATGTTGGACTTCTGTATC TTGGTGTATCGTTTTTGTCACACTCTCTTCGCCAAAGGTACGATCTTTTT TTATCCGGGGTTATGCTTATTGTACATGAGATGAAACAGCTTGTAATTGA AGTTTTGATACATCTTAAAAGGCTAACTGAAGAAGAAGCGCAGAGAGAGG TTAAAGTGAGTGAAGAGGATGTGTTACGAGTAGCAAGAAGAATGCTTCCC ATCACCAATTTGGCCATTTCAAAGATGACCCAGCTTTTCTCTGGCGAACC AGCAATGACACTCAAAGTGGCACCCTTTGTTCTAATAGGAGCGGAGTATG GTTACCTCATAACATTGTGGAGGCTATTTGCTTTAGGTTTCTTCCTCAGC TTCACCCTCCCAAAACTATACTCATGTTATGCTAACCAGATTAACCAAAA AGTTGAAAATGCACAAAAGAGAATAGTTGAAGCGTGGGGAATATGCACAC ACAAGAAGTTCGTGGCAGGCTCTATGATCACTGCCTTCTGGAACCTGACT AGTCTCAAGATCCGTTTCTTCACAGTGTTCATCATAGTGGTAGTCATCAG ATACAAAAGGCAGAATGTACAGTTAGATTCCGAAGAAGATCATGAGGAGA AGCAACAAGAAGAACAAACTCACACGGAGCAACCGGAGGAGAAGTCAGCA TCGCCGCCACCGTCTCCACCTCAGCCAATAGAAGAAGAGCAAGCATTAGT AGTGGTGGCTGCAGAAACCGAAGCACCACCAAAGTAG back to topprotein sequence of BnaA01T0006400WE >BnaA01T0006400WE-P ID=BnaA01T0006400WE-P|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=polypeptide|length=479bp
MDLSTPPRSSSRLARRINTTTLVKTNGDSPIPSLDLVLSSPKSIDTPPYP SPASLYSPSSPVTLREILLLSPSPLRKSRTRLANRFEMEAAEAARRCKTK GGQNGLLGSASPRSCRRSRRRSEVVVVEEETKPVVVVLNDEKAAKQRKHK KTGRSKKEKQSSLPSPSSDLSKDVCEGDLERIRENINDLIMWRDVAKSTL WFGFGCLCFLSSCFAKGFSFSVFSAVSHVGLLYLGVSFLSHSLRQRYDLF LSGVMLIVHEMKQLVIEVLIHLKRLTEEEAQREVKVSEEDVLRVARRMLP ITNLAISKMTQLFSGEPAMTLKVAPFVLIGAEYGYLITLWRLFALGFFLS FTLPKLYSCYANQINQKVENAQKRIVEAWGICTHKKFVAGSMITAFWNLT SLKIRFFTVFIIVVVIRYKRQNVQLDSEEDHEEKQQEEQTHTEQPEEKSA SPPPSPPQPIEEEQALVVVAAETEAPPK. back to topmRNA from alignment at westarv0_A01:375661..377596- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0006400WE ID=BnaA01T0006400WE|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=mRNA|length=1936bp|location=Sequence derived from alignment at westarv0_A01:375661..377596- (Brassica napus Westar) ATGGATCTTTCTACACCTCCTAGATCCTCCTCCCGTCTCGCTCGGAGAAT
CAACACCACCACTCTCGTCAAAACCAACGGAGACTCACCAATCCCCTCTC
TCGATTTAGTCCTATCCTCTCCCAAGAGCATCGACACTCCTCCTTACCCG
TCTCCCGCTTCACTATACTCACCGTCTTCCCCTGTTACGCTCCGAGAGAT
TCTCCTCTTGTCTCCTTCTCCTCTCCGGAAATCGAGAACCCGTTTAGCGA
ATCGGTTCGAGATGGAGGCCGCGGAGGCTGCGAGGCGGTGCAAGACGAAG
GGAGGGCAGAACGGTCTTTTGGGTAGTGCGTCGCCGAGGAGTTGCCGGAG
GTCGAGGCGGAGGTCGGAGGTGGTGGTGGTGGAGGAGGAGACGAAGCCTG
TTGTTGTTGTGTTGAATGATGAGAAGGCTGCGAAACAGAGGAAGCATAAG
AAGACGGGTCGGTCTAAGAAGGAGAAACAGAGTTCGTTGCCTTCTCCCTC
TTCAGATCTGAGTAAAGGTCCTAACTTTAATTATTTCAATTTTTTATTTG
TTCTGATATGATGTTTGTAGTTTAATGACTGTGTGTGGTTTTTTTTTTGT
AGATGTATGTGAAGGTGATTTGGAGAGGATTAGAGAGAATATCAACGATT
TGATCATGTGGAGAGATGTTGCGAAGTCGACACTTTGGTTTGGTTTTGGT
TGTTTGTGTTTCTTGTCTTCTTGCTTTGCTAAAGGGTTTAGCTTTAGGTA
TGTACATCGAGTTCACTCTCTAGATTTTGCTCATTTCTAGCTTCAGTCAT
TTGTCACATTCATGATGAAACCTTTGTGTGTTGTAAAGTGTTTTCTCAGC
CGTCTCTCATGTTGGACTTCTGTATCTTGGTGTATCGTTTTTGTCACACT
CTCTTCGCCAAAGGTACGATCTTTTTTTATCCGGGGTTATGCTTATTGTA
CATGAGATGAAACAGCTTGTAATTGAAGTTTTGATACATCTTAAAAGGCT
AACTGAAGAAGAAGCGCAGAGAGAGGTTAAAGTGAGTGAAGAGGATGTGT
TACGAGTAGCAAGAAGAATGCTTCCCATCACCAATTTGGCCATTTCAAAG
ATGACCCAGCTTTTCTCTGGCGAACCAGCAATGACACTCAAAGTAGAGTA
AACACTTCTATGAATGTGATTTTTTTATTTTGTTGAGCTTCTCCTTATGT
TACAACTTGGTTTCAGGTGGCACCCTTTGTTCTAATAGGAGCGGAGTATG
GTTACCTCATAACATTGTGGAGGCTATTTGCTTTAGGTATGCTTGCTAAC
AATGTTTTCAACTGATTCTTTGCGTTCTTGTAGTTGTTGTAAGTATCTAG
TAGAATTGACATTGTTATGGAAACAGGTTTCTTCCTCAGCTTCACCCTCC
CAAAACTATACTCATGTTATGCTAACCAGATTAACCAAAAAGGTAAATTC
TCTATTATCAGATCTTTTGTTGCCCTTTGATGAATAGAACGAAGTAAATG
GAAAAGCTATTTACATTTGTGTAGTTGAAAATGCACAAAAGAGAATAGTT
GAAGCGTGGGGAATATGCACACACAAGAAGTTCGTGGCAGGCTCTATGAT
CACTGCCTTCTGGAACCTGACTAGTCTCAAGATCCGTTTCTTCACAGGTT
AAAAAACTTTACCAGTTGTTGATCTGAGATTGGTGACAGAAACTGATATT
CTCTAGATATGGCGCTTTTTGCAGTGTTCATCATAGTGGTAGTCATCAGA
TACAAAAGGCAGAATGTACAGTTAGATTCCGAAGAAGATCATGAGGAGAA
GCAACAAGAAGAACAAACTCACACGGAGCAACCGGAGGAGAAGTCAGCAT
CGCCGCCACCGTCTCCACCTCAGCCAATAGAAGAAGAGCAAGCATTAGTA
GTGGTGGCTGCAGAAACCGAAGCACCACCAAAGTAG back to topCoding sequence (CDS) from alignment at westarv0_A01:375661..377596- >BnaA01T0006400WE ID=BnaA01T0006400WE|Name=BnaA01T0006400WE|organism=Brassica napus Westar|type=CDS|length=1437bp|location=Sequence derived from alignment at westarv0_A01:375661..377596- (Brassica napus Westar) ATGGATCTTTCTACACCTCCTAGATCCTCCTCCCGTCTCGCTCGGAGAAT CAACACCACCACTCTCGTCAAAACCAACGGAGACTCACCAATCCCCTCTC TCGATTTAGTCCTATCCTCTCCCAAGAGCATCGACACTCCTCCTTACCCG TCTCCCGCTTCACTATACTCACCGTCTTCCCCTGTTACGCTCCGAGAGAT TCTCCTCTTGTCTCCTTCTCCTCTCCGGAAATCGAGAACCCGTTTAGCGA ATCGGTTCGAGATGGAGGCCGCGGAGGCTGCGAGGCGGTGCAAGACGAAG GGAGGGCAGAACGGTCTTTTGGGTAGTGCGTCGCCGAGGAGTTGCCGGAG GTCGAGGCGGAGGTCGGAGGTGGTGGTGGTGGAGGAGGAGACGAAGCCTG TTGTTGTTGTGTTGAATGATGAGAAGGCTGCGAAACAGAGGAAGCATAAG AAGACGGGTCGGTCTAAGAAGGAGAAACAGAGTTCGTTGCCTTCTCCCTC TTCAGATCTGAGTAAAGATGTATGTGAAGGTGATTTGGAGAGGATTAGAG AGAATATCAACGATTTGATCATGTGGAGAGATGTTGCGAAGTCGACACTT TGGTTTGGTTTTGGTTGTTTGTGTTTCTTGTCTTCTTGCTTTGCTAAAGG GTTTAGCTTTAGTGTTTTCTCAGCCGTCTCTCATGTTGGACTTCTGTATC TTGGTGTATCGTTTTTGTCACACTCTCTTCGCCAAAGGTACGATCTTTTT TTATCCGGGGTTATGCTTATTGTACATGAGATGAAACAGCTTGTAATTGA AGTTTTGATACATCTTAAAAGGCTAACTGAAGAAGAAGCGCAGAGAGAGG TTAAAGTGAGTGAAGAGGATGTGTTACGAGTAGCAAGAAGAATGCTTCCC ATCACCAATTTGGCCATTTCAAAGATGACCCAGCTTTTCTCTGGCGAACC AGCAATGACACTCAAAGTGGCACCCTTTGTTCTAATAGGAGCGGAGTATG GTTACCTCATAACATTGTGGAGGCTATTTGCTTTAGGTTTCTTCCTCAGC TTCACCCTCCCAAAACTATACTCATGTTATGCTAACCAGATTAACCAAAA AGTTGAAAATGCACAAAAGAGAATAGTTGAAGCGTGGGGAATATGCACAC ACAAGAAGTTCGTGGCAGGCTCTATGATCACTGCCTTCTGGAACCTGACT AGTCTCAAGATCCGTTTCTTCACAGTGTTCATCATAGTGGTAGTCATCAG ATACAAAAGGCAGAATGTACAGTTAGATTCCGAAGAAGATCATGAGGAGA AGCAACAAGAAGAACAAACTCACACGGAGCAACCGGAGGAGAAGTCAGCA TCGCCGCCACCGTCTCCACCTCAGCCAATAGAAGAAGAGCAAGCATTAGT AGTGGTGGCTGCAGAAACCGAAGCACCACCAAAGTAG back to top
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