BnaA01T0004300WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0004300WE
Unique Name	BnaA01T0004300WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:257253..258513 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0004300WE	BnaA01G0004300WE	Brassica napus Westar	gene	westarv0_A01 257253..258513 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0004300WE	BnaA01T0004300WE-P	Brassica napus Westar	polypeptide	westarv0_A01 257253..258513 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0004300WE.exon3	BnaA01T0004300WE.exon3	Brassica napus Westar	exon	westarv0_A01 257253..257945 -
BnaA01T0004300WE.exon2	BnaA01T0004300WE.exon2	Brassica napus Westar	exon	westarv0_A01 258032..258118 -
BnaA01T0004300WE.exon1	BnaA01T0004300WE.exon1	Brassica napus Westar	exon	westarv0_A01 258268..258513 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0004300WE	cds.BnaA01T0004300WE	Brassica napus Westar	CDS	westarv0_A01 258268..258513 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:257253..258513-
coding sequence from alignment at westarv0_A01:257253..258513-

spliced messenger RNA

>BnaA01T0004300WE ID=BnaA01T0004300WE|Name=BnaA01T0004300WE|organism=Brassica napus Westar|type=mRNA|length=1026bp|location=Sequence derived from alignment at westarv0_A01:257253..258513- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGTATCATTTATCTTAGTTCAGACGAGGAGGATGATAAAATAGT
CGACCACACTGATGTGTTTGACGACGAGAAACCGAACCATACTGGTCAAC
GGAAACCAGTTTCCTCCGATGTAATGGTGGAGGAAGAGGATGACGATTGT
GTAGTCTTGGATGGTGATCCTTACAAGACGAAGGAGACTATATCTAACAC
TTGTGTAACAGATGATGATATCCTTGTACTAGGGCAGAAGGGCGAGGTAG
CATGTAGAGACTTCCCACATCCACGACATGCCTGCGCTAAGTACCCTTTC
AAGTCCACATCACACGACAAGTACTGTGACATGTGTCATTGTTATGTTTG
TGACATACGTGCTCCATGTCCTCACTGGTGCATAGGTATCCCCGCCTATG
ATCACTGCCATGCCAATGATAAAGATCAGATATGGAAAAATCAACGTGAA
TGCGTCAGGACTGGAACTGGAAATTTACTTCGGCCTCAATCTATGCAACA
AAACACTTGGTATTCCTCTGTAAACCAGTTTGGACCATCCACTATGGTTG
CGTCTCGCCCAAACACGTACATAAGTCCTGGTTACAGACCCGAGCAACCA
AGAACCTTTCCGCAAAACCCTGCGTTACAACCTCGTGCTCCTCAGTTATA
CCAAAAGCAGTATGGTTGGTTTAATAATGGTAACCCAATCCCCCAAGCAT
TCTCTTCCAAATCGCAACCATGGACTCAAAAGCCAAGTGTAGGCGCTACT
CCTGTGGAAGTTGCTCAAGGCTTGCCGTATAACCGTCACGCTACTCCTCC
CACTGCTTTACAAGGCAATTCACAGCTGACGTTTGGTGGTTATGTCTCAA
CTCCAACATCACCTTACACCAATGGTTACGCTAAAAAATGTAGCTGGCTA
AATGCAGTTCCGTGTGGAACTCCTAATCCTCCGGCGAATCAGCAGCAACA
ACAACAACAAAGTAGAAGTGTCAACAAAGCGCTGGCGGAGATTGAAGACT
GGCTCATGGACATTGGACAGTATTGA

protein sequence of BnaA01T0004300WE

>BnaA01T0004300WE-P ID=BnaA01T0004300WE-P|Name=BnaA01T0004300WE|organism=Brassica napus Westar|type=polypeptide|length=342bp
MNGIIYLSSDEEDDKIVDHTDVFDDEKPNHTGQRKPVSSDVMVEEEDDDC
VVLDGDPYKTKETISNTCVTDDDILVLGQKGEVACRDFPHPRHACAKYPF
KSTSHDKYCDMCHCYVCDIRAPCPHWCIGIPAYDHCHANDKDQIWKNQRE
CVRTGTGNLLRPQSMQQNTWYSSVNQFGPSTMVASRPNTYISPGYRPEQP
RTFPQNPALQPRAPQLYQKQYGWFNNGNPIPQAFSSKSQPWTQKPSVGAT
PVEVAQGLPYNRHATPPTALQGNSQLTFGGYVSTPTSPYTNGYAKKCSWL
NAVPCGTPNPPANQQQQQQQSRSVNKALAEIEDWLMDIGQY.

mRNA from alignment at westarv0_A01:257253..258513-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0004300WE ID=BnaA01T0004300WE|Name=BnaA01T0004300WE|organism=Brassica napus Westar|type=mRNA|length=1261bp|location=Sequence derived from alignment at westarv0_A01:257253..258513- (Brassica napus Westar)
ATGAATGGTATCATTTATCTTAGTTCAGACGAGGAGGATGATAAAATAGT
CGACCACACTGATGTGTTTGACGACGAGAAACCGAACCATACTGGTCAAC
GGAAACCAGTTTCCTCCGATGTAATGGTGGAGGAAGAGGATGACGATTGT
GTAGTCTTGGATGGTGATCCTTACAAGACGAAGGAGACTATATCTAACAC
TTGTGTAACAGATGATGATATCCTTGTACTAGGGCAGAAGGGCGAGGTAA
AATCATATCAAAACTTTCATCATTACTTGCAACTTGTTCGTAAGATTATA
AGTGAAGTTACTTTAAAGTGTATAGTTTCTAAGTTGTTTTTAAGGAAGTT
GCAACTTGTTCGTAGGATTATAAGGAAGTTGTTTTTATTTTATAGGTAGC
ATGTAGAGACTTCCCACATCCACGACATGCCTGCGCTAAGTACCCTTTCA
AGTCCACATCACACGACAAGTACTGTGACATGGTGAGAAATGTCTTTATT
TGCATCTTGCTTATTATATTAATTTATGCTTATATTGCTAATTAATGGTT
ATGCTTTTTCTTAAACAGTGTCATTGTTATGTTTGTGACATACGTGCTCC
ATGTCCTCACTGGTGCATAGGTATCCCCGCCTATGATCACTGCCATGCCA
ATGATAAAGATCAGATATGGAAAAATCAACGTGAATGCGTCAGGACTGGA
ACTGGAAATTTACTTCGGCCTCAATCTATGCAACAAAACACTTGGTATTC
CTCTGTAAACCAGTTTGGACCATCCACTATGGTTGCGTCTCGCCCAAACA
CGTACATAAGTCCTGGTTACAGACCCGAGCAACCAAGAACCTTTCCGCAA
AACCCTGCGTTACAACCTCGTGCTCCTCAGTTATACCAAAAGCAGTATGG
TTGGTTTAATAATGGTAACCCAATCCCCCAAGCATTCTCTTCCAAATCGC
AACCATGGACTCAAAAGCCAAGTGTAGGCGCTACTCCTGTGGAAGTTGCT
CAAGGCTTGCCGTATAACCGTCACGCTACTCCTCCCACTGCTTTACAAGG
CAATTCACAGCTGACGTTTGGTGGTTATGTCTCAACTCCAACATCACCTT
ACACCAATGGTTACGCTAAAAAATGTAGCTGGCTAAATGCAGTTCCGTGT
GGAACTCCTAATCCTCCGGCGAATCAGCAGCAACAACAACAACAAAGTAG
AAGTGTCAACAAAGCGCTGGCGGAGATTGAAGACTGGCTCATGGACATTG
GACAGTATTGA

Coding sequence (CDS) from alignment at westarv0_A01:257253..258513-

>BnaA01T0004300WE ID=BnaA01T0004300WE|Name=BnaA01T0004300WE|organism=Brassica napus Westar|type=CDS|length=1026bp|location=Sequence derived from alignment at westarv0_A01:257253..258513- (Brassica napus Westar)
ATGAATGGTATCATTTATCTTAGTTCAGACGAGGAGGATGATAAAATAGT
CGACCACACTGATGTGTTTGACGACGAGAAACCGAACCATACTGGTCAAC
GGAAACCAGTTTCCTCCGATGTAATGGTGGAGGAAGAGGATGACGATTGT
GTAGTCTTGGATGGTGATCCTTACAAGACGAAGGAGACTATATCTAACAC
TTGTGTAACAGATGATGATATCCTTGTACTAGGGCAGAAGGGCGAGGTAG
CATGTAGAGACTTCCCACATCCACGACATGCCTGCGCTAAGTACCCTTTC
AAGTCCACATCACACGACAAGTACTGTGACATGTGTCATTGTTATGTTTG
TGACATACGTGCTCCATGTCCTCACTGGTGCATAGGTATCCCCGCCTATG
ATCACTGCCATGCCAATGATAAAGATCAGATATGGAAAAATCAACGTGAA
TGCGTCAGGACTGGAACTGGAAATTTACTTCGGCCTCAATCTATGCAACA
AAACACTTGGTATTCCTCTGTAAACCAGTTTGGACCATCCACTATGGTTG
CGTCTCGCCCAAACACGTACATAAGTCCTGGTTACAGACCCGAGCAACCA
AGAACCTTTCCGCAAAACCCTGCGTTACAACCTCGTGCTCCTCAGTTATA
CCAAAAGCAGTATGGTTGGTTTAATAATGGTAACCCAATCCCCCAAGCAT
TCTCTTCCAAATCGCAACCATGGACTCAAAAGCCAAGTGTAGGCGCTACT
CCTGTGGAAGTTGCTCAAGGCTTGCCGTATAACCGTCACGCTACTCCTCC
CACTGCTTTACAAGGCAATTCACAGCTGACGTTTGGTGGTTATGTCTCAA
CTCCAACATCACCTTACACCAATGGTTACGCTAAAAAATGTAGCTGGCTA
AATGCAGTTCCGTGTGGAACTCCTAATCCTCCGGCGAATCAGCAGCAACA
ACAACAACAAAGTAGAAGTGTCAACAAAGCGCTGGCGGAGATTGAAGACT
GGCTCATGGACATTGGACAGTATTGA

Orthology

View orthology data for BnaA01T0004300WE