BnaA01T0000800WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0000800WE
Unique NameBnaA01T0000800WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:62134..63446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0000800WEBnaA01G0000800WEBrassica napus Westargenewestarv0_A01 62134..63446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0000800WEBnaA01T0000800WE-PBrassica napus Westarpolypeptidewestarv0_A01 62134..63446 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0000800WE.exon1BnaA01T0000800WE.exon1Brassica napus Westarexonwestarv0_A01 62134..62510 +
BnaA01T0000800WE.exon2BnaA01T0000800WE.exon2Brassica napus Westarexonwestarv0_A01 62609..62868 +
BnaA01T0000800WE.exon3BnaA01T0000800WE.exon3Brassica napus Westarexonwestarv0_A01 62941..63082 +
BnaA01T0000800WE.exon4BnaA01T0000800WE.exon4Brassica napus Westarexonwestarv0_A01 63193..63254 +
BnaA01T0000800WE.exon5BnaA01T0000800WE.exon5Brassica napus Westarexonwestarv0_A01 63409..63446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0000800WEcds.BnaA01T0000800WEBrassica napus WestarCDSwestarv0_A01 62134..62510 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0000800WE ID=BnaA01T0000800WE|Name=BnaA01T0000800WE|organism=Brassica napus Westar|type=mRNA|length=879bp|location=Sequence derived from alignment at westarv0_A01:62134..63446+ (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAATCCGTAGCAGCAGAGCATGATTACATAGGTTTGTCCATGGA
AGCATCACAAATGTCTGACAACAAAACCAAAACCAAAACCAGAGACAACA
ACAACAACAAAAACGACGACGTTCTGAATTTCAAAGCAACCGAGTTAAGA
CTCGGTTTACCCGGTTCTGAGTCACCGGAGCGAGTTGACCAACGGTTCTT
GTCTCTCAAGAGCTCATGTCCAGTGTCAGGTGCCAAAAGGGTGTTTTCCG
ACGCCATTAACGGGTCTACCAAATGGGTCTTCTCTCCTGGATCCGCTACT
GATGTCAAAGACATTAAACCGGCCGTTCCGGTTAAGGAGAAGAAGAGCTC
TGCTGCAGCAGCACCTCCAGCTTCCAAGGCACAAGTTGTGGGTTGGCCAC
CGATTAGATCATTCAGGAAGAACACAATGGCTTCTTCTCAATCTCAGAAA
CAAGGTGGTGGTGATAATAATAACTCAGAGACTGAAGGAGAAGCAAAGTC
TGGAGCTGAGCCTTGCTTGTATGTTAAAGTGAGCATGGAAGGTGCTCCTT
ACTTGAGGAAAATCGATCTCAAGACTTACAAGAGCTACGTTGAGCTCTCT
TCTGCTCTTGAGGAGATGTTCAGCTGCTTCACTATTGGTCAGTTTGGGTC
TCACGGAGGGTGTGGCCGAGATGGGTTAAACGAGAGTCGCTTGACAGATC
TCTTGCGTGGTTCTGAGTATGTTGTTACCTATGAAGACAAAGACAGTGAC
TGGATGTTGGTTGGTGATGTCCCTTGGGAAATGTTTATATGCTCTTGCAA
GAAGCTGAGGATCATGAAGAGCTCTGAGGCTATAGGCTTAGCTCCAAGGG
TGATGGAGAAATGCAGAAGCCGGAACTAG
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protein sequence of BnaA01T0000800WE

>BnaA01T0000800WE-P ID=BnaA01T0000800WE-P|Name=BnaA01T0000800WE|organism=Brassica napus Westar|type=polypeptide|length=293bp
MSESVAAEHDYIGLSMEASQMSDNKTKTKTRDNNNNKNDDVLNFKATELR
LGLPGSESPERVDQRFLSLKSSCPVSGAKRVFSDAINGSTKWVFSPGSAT
DVKDIKPAVPVKEKKSSAAAAPPASKAQVVGWPPIRSFRKNTMASSQSQK
QGGGDNNNSETEGEAKSGAEPCLYVKVSMEGAPYLRKIDLKTYKSYVELS
SALEEMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSD
WMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN.
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mRNA from alignment at westarv0_A01:62134..63446+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0000800WE ID=BnaA01T0000800WE|Name=BnaA01T0000800WE|organism=Brassica napus Westar|type=mRNA|length=1313bp|location=Sequence derived from alignment at westarv0_A01:62134..63446+ (Brassica napus Westar)
ATGTCTGAATCCGTAGCAGCAGAGCATGATTACATAGGTTTGTCCATGGA
AGCATCACAAATGTCTGACAACAAAACCAAAACCAAAACCAGAGACAACA
ACAACAACAAAAACGACGACGTTCTGAATTTCAAAGCAACCGAGTTAAGA
CTCGGTTTACCCGGTTCTGAGTCACCGGAGCGAGTTGACCAACGGTTCTT
GTCTCTCAAGAGCTCATGTCCAGTGTCAGGTGCCAAAAGGGTGTTTTCCG
ACGCCATTAACGGGTCTACCAAATGGGTCTTCTCTCCTGGATCCGCTACT
GATGTCAAAGACATTAAACCGGCCGTTCCGGTTAAGGAGAAGAAGAGCTC
TGCTGCAGCAGCACCTCCAGCTTCCAAGTAAGATATTAAAAAAAAAAAGC
TCTCTCCTTTCTCAGAGACATCTCTGTTTAGACCTTTTATGTTATTTTTT
TTTTTGTGTGGTTTTGATGGAGCAGGGCACAAGTTGTGGGTTGGCCACCG
ATTAGATCATTCAGGAAGAACACAATGGCTTCTTCTCAATCTCAGAAACA
AGGTGGTGGTGATAATAATAACTCAGAGACTGAAGGAGAAGCAAAGTCTG
GAGCTGAGCCTTGCTTGTATGTTAAAGTGAGCATGGAAGGTGCTCCTTAC
TTGAGGAAAATCGATCTCAAGACTTACAAGAGCTACGTTGAGCTCTCTTC
TGCTCTTGAGGAGATGTTCAGCTGCTTCACTATTGGTATAGTTTCTAACT
CTCTTTCATTGAAGATGATAATACATGTGTGTGAGTGAGTTGTTTCATTT
TCTACAGGTCAGTTTGGGTCTCACGGAGGGTGTGGCCGAGATGGGTTAAA
CGAGAGTCGCTTGACAGATCTCTTGCGTGGTTCTGAGTATGTTGTTACCT
ATGAAGACAAAGACAGTGACTGGATGTTGGTTGGTGATGTCCCTTGGGAG
TAAGTCTTTGATTTTGCTTAATTTTAGAAACCACTAAGATCAATCAACAA
CTTAAGCTTAACCGAAGAATATAGATCAGTGAAAACTCTTTACTGTCTTT
TCTCTGCAGAATGTTTATATGCTCTTGCAAGAAGCTGAGGATCATGAAGA
GCTCTGAGGCTATAGGCTTAGGTTAGTCTTCCTTCTCTACTCTTGTTCTA
CGCCGATCACCTGCTCCTTAAACTTTTCTTAGTGAGGAATAGCTCAGAAA
GGATACCACTTGGTTCTTTCCGAGCTCTTGAAACACTAAGAACTGTCCCT
AACACAAATCTTGTTTGTTTTGCAGCTCCAAGGGTGATGGAGAAATGCAG
AAGCCGGAACTAG
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Coding sequence (CDS) from alignment at westarv0_A01:62134..63446+

>BnaA01T0000800WE ID=BnaA01T0000800WE|Name=BnaA01T0000800WE|organism=Brassica napus Westar|type=CDS|length=879bp|location=Sequence derived from alignment at westarv0_A01:62134..63446+ (Brassica napus Westar)
ATGTCTGAATCCGTAGCAGCAGAGCATGATTACATAGGTTTGTCCATGGA
AGCATCACAAATGTCTGACAACAAAACCAAAACCAAAACCAGAGACAACA
ACAACAACAAAAACGACGACGTTCTGAATTTCAAAGCAACCGAGTTAAGA
CTCGGTTTACCCGGTTCTGAGTCACCGGAGCGAGTTGACCAACGGTTCTT
GTCTCTCAAGAGCTCATGTCCAGTGTCAGGTGCCAAAAGGGTGTTTTCCG
ACGCCATTAACGGGTCTACCAAATGGGTCTTCTCTCCTGGATCCGCTACT
GATGTCAAAGACATTAAACCGGCCGTTCCGGTTAAGGAGAAGAAGAGCTC
TGCTGCAGCAGCACCTCCAGCTTCCAAGGCACAAGTTGTGGGTTGGCCAC
CGATTAGATCATTCAGGAAGAACACAATGGCTTCTTCTCAATCTCAGAAA
CAAGGTGGTGGTGATAATAATAACTCAGAGACTGAAGGAGAAGCAAAGTC
TGGAGCTGAGCCTTGCTTGTATGTTAAAGTGAGCATGGAAGGTGCTCCTT
ACTTGAGGAAAATCGATCTCAAGACTTACAAGAGCTACGTTGAGCTCTCT
TCTGCTCTTGAGGAGATGTTCAGCTGCTTCACTATTGGTCAGTTTGGGTC
TCACGGAGGGTGTGGCCGAGATGGGTTAAACGAGAGTCGCTTGACAGATC
TCTTGCGTGGTTCTGAGTATGTTGTTACCTATGAAGACAAAGACAGTGAC
TGGATGTTGGTTGGTGATGTCCCTTGGGAAATGTTTATATGCTCTTGCAA
GAAGCTGAGGATCATGAAGAGCTCTGAGGCTATAGGCTTAGCTCCAAGGG
TGATGGAGAAATGCAGAAGCCGGAACTAG
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