BnaA01T0000200WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0000200WE
Unique Name	BnaA01T0000200WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:8943..10746 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0000200WE	BnaA01G0000200WE	Brassica napus Westar	gene	westarv0_A01 8943..10746 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0000200WE	BnaA01T0000200WE-P	Brassica napus Westar	polypeptide	westarv0_A01 8943..10746 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0000200WE.exon5	BnaA01T0000200WE.exon5	Brassica napus Westar	exon	westarv0_A01 8943..9060 -
BnaA01T0000200WE.exon4	BnaA01T0000200WE.exon4	Brassica napus Westar	exon	westarv0_A01 9180..9247 -
BnaA01T0000200WE.exon3	BnaA01T0000200WE.exon3	Brassica napus Westar	exon	westarv0_A01 9426..9521 -
BnaA01T0000200WE.exon2	BnaA01T0000200WE.exon2	Brassica napus Westar	exon	westarv0_A01 9658..9978 -
BnaA01T0000200WE.exon1	BnaA01T0000200WE.exon1	Brassica napus Westar	exon	westarv0_A01 10423..10746 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0000200WE	cds.BnaA01T0000200WE	Brassica napus Westar	CDS	westarv0_A01 10423..10746 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:8943..10746-
coding sequence from alignment at westarv0_A01:8943..10746-

spliced messenger RNA

>BnaA01T0000200WE ID=BnaA01T0000200WE|Name=BnaA01T0000200WE|organism=Brassica napus Westar|type=mRNA|length=927bp|location=Sequence derived from alignment at westarv0_A01:8943..10746- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGTCGTCTTACCTAAGCCCAACGCGCCTTCTTGAAGGCTACCT
CCGCCGCTGCCTCACGGCGGCAGGACTCACGTCGCAGACTCTTTCCATAG
ATTCTGAAACAACCATCCACTTCTGGGGTCCATCATCTGTAGACCACAGC
ATCGATGACAGACCGGTGATGCTTCTCCTTCACGGCTTCGGTCCATCTGC
CATGTGGCAGTGGCGAAGACAGATTCAAGCCTTCTCACCGTCTGTGTTCC
GGGTATATTGTCCTGATCTTGTTTTCTTTGGTGACTCTACCACTTCATCC
ACCAATCGTTCCGAGGTCTTCCAGGCGGAGTGTATGGCAAAGCTAATGGA
GAAACTAGGAATAGAGAAGAAGTTTAATGTAGTTGGAACAAGCTATGGCG
GATTTGTGGCGTACCATATGGCAAAAATGTGGCCTGAAAAAGTGGAGAAA
GTAGTGATTGCAAGCTCCGGCATCAACATGAGAACGTGTGACAGTGAAAG
TTTATTGCAAAGGTCGAACTGTGAGTGCATTGAGAAAGTTATGTTACCAT
CTACTGCGTCCGAGCTTCGGACACTTATGGGTTTGGCATCTTCTTGGAGG
ATGCTTCGTATGTTTCCTGATGCTCTCTGGAATGACTTCATTAGTAATTT
ATATCAAAAGAATAGAAAAGAGAAAGTAGAATTATTGAAGGGGTTGACTC
TTGGCAGGGAGGAGAAATTAAACATCGAACCTCTTTCTCAGGGGATCCTA
ATAATATGGGGAGATAAAGATCAGATATTTCCCGTGAAGATGGCCTACGA
ACTAAAAGAGATTCTTGGAGATAAGACAAAACTGGAAATCATTGAGAACA
CTTCACATATTCCCCAAATCGAATGTGCCCAAGAGTTCAACAACGTCGTT
TTGAGATTTTTGAAAGGATCTCAATAG

protein sequence of BnaA01T0000200WE

>BnaA01T0000200WE-P ID=BnaA01T0000200WE-P|Name=BnaA01T0000200WE|organism=Brassica napus Westar|type=polypeptide|length=309bp
MSLSSYLSPTRLLEGYLRRCLTAAGLTSQTLSIDSETTIHFWGPSSVDHS
IDDRPVMLLLHGFGPSAMWQWRRQIQAFSPSVFRVYCPDLVFFGDSTTSS
TNRSEVFQAECMAKLMEKLGIEKKFNVVGTSYGGFVAYHMAKMWPEKVEK
VVIASSGINMRTCDSESLLQRSNCECIEKVMLPSTASELRTLMGLASSWR
MLRMFPDALWNDFISNLYQKNRKEKVELLKGLTLGREEKLNIEPLSQGIL
IIWGDKDQIFPVKMAYELKEILGDKTKLEIIENTSHIPQIECAQEFNNVV
LRFLKGSQ.

mRNA from alignment at westarv0_A01:8943..10746-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0000200WE ID=BnaA01T0000200WE|Name=BnaA01T0000200WE|organism=Brassica napus Westar|type=mRNA|length=1804bp|location=Sequence derived from alignment at westarv0_A01:8943..10746- (Brassica napus Westar)
ATGTCGTTGTCGTCTTACCTAAGCCCAACGCGCCTTCTTGAAGGCTACCT
CCGCCGCTGCCTCACGGCGGCAGGACTCACGTCGCAGACTCTTTCCATAG
ATTCTGAAACAACCATCCACTTCTGGGGTCCATCATCTGTAGACCACAGC
ATCGATGACAGACCGGTGATGCTTCTCCTTCACGGCTTCGGTCCATCTGC
CATGTGGCAGTGGCGAAGACAGATTCAAGCCTTCTCACCGTCTGTGTTCC
GGGTATATTGTCCTGATCTTGTTTTCTTTGGTGACTCTACCACTTCATCC
ACCAATCGTTCCGAGGTCTTCCAGGTATATATGACTCTTTTGCTTCCACA
TGTTTTCCACTAGGATGATTGGATTTGAACTAGTATTGTTTTCTGGTCAC
GTGAAAAGTAGTTTTAGTAAATATAAAAACAGAAGATTAATTTATTTACA
TATGCCCTTTTAACATATGGGAAAAATATATTGGAACTTAATTCTTAATA
TGATTTTTTTTCTCTTTTTTGTCGACTAATTTGAATTTTATTCTACTTAA
CATATATATATATATATATATTGTAAATTTGTAACTATTCTTAAATTCTA
CTGATTAATATATTTGATATAAATCAAACTTGAAAGGAAACATAAAAGTT
AGTCCATACTGGATGGATATTCTTTAGAAATTTGATGTGTTTGCTCTTTT
TATATCATATATGAACTCATTTTAGTATATAAACACATTCTTATTAGAAA
CAAAAAATAAATTATTAGGCGGAGTGTATGGCAAAGCTAATGGAGAAACT
AGGAATAGAGAAGAAGTTTAATGTAGTTGGAACAAGCTATGGCGGATTTG
TGGCGTACCATATGGCAAAAATGTGGCCTGAAAAAGTGGAGAAAGTAGTG
ATTGCAAGCTCCGGCATCAACATGAGAACGTGTGACAGTGAAAGTTTATT
GCAAAGGTCGAACTGTGAGTGCATTGAGAAAGTTATGTTACCATCTACTG
CGTCCGAGCTTCGGACACTTATGGGTTTGGCATCTTCTTGGAGGATGCTT
CGTATGTTTCCTGATGCTCTCTGGAATGACTTCATTAGTGTAAGTGACTA
AGTATTGTTGGGTGTTGACAATGAGTATCATTGTAACCACATAAATCAAA
CTCTTGTTGACATTTTTTTAGCAAAGATAAACTAATCCAAACAAATAATT
TGGTTACTTTGTATGATTTATGCAGAATTTATATCAAAAGAATAGAAAAG
AGAAAGTAGAATTATTGAAGGGGTTGACTCTTGGCAGGGAGGAGAAATTA
AACATCGAACCTCTTTCTCAGGTACGTGCTTCTCTTTTACTGAACACGTA
AACTTTGTTTTGTAGACGTGATGTAATTCCAAACATGTCTTGGGATGTCT
TTCAAATCAAACGTAGTTTACTTCTAAGTTCTAACAATGAATATGAGTAC
TTAAATGGGAGTCATATGATTAACGTCAATGCATTTTATATACTCTTAGG
GGATCCTAATAATATGGGGAGATAAAGATCAGATATTTCCCGTGAAGATG
GCCTACGAACTAAAAGAGTAAGTACATGAGTATTTCTTGGTCAAGGTTTA
GCGTATATTGTATTAATTTTTTCAAAGATCATTAGTATTCTTAAGCATAT
TCTTTTAAATGTTGCAATGGTTGGTATTTTATGTAGGATTCTTGGAGATA
AGACAAAACTGGAAATCATTGAGAACACTTCACATATTCCCCAAATCGAA
TGTGCCCAAGAGTTCAACAACGTCGTTTTGAGATTTTTGAAAGGATCTCA
ATAG

Coding sequence (CDS) from alignment at westarv0_A01:8943..10746-

>BnaA01T0000200WE ID=BnaA01T0000200WE|Name=BnaA01T0000200WE|organism=Brassica napus Westar|type=CDS|length=927bp|location=Sequence derived from alignment at westarv0_A01:8943..10746- (Brassica napus Westar)
ATGTCGTTGTCGTCTTACCTAAGCCCAACGCGCCTTCTTGAAGGCTACCT
CCGCCGCTGCCTCACGGCGGCAGGACTCACGTCGCAGACTCTTTCCATAG
ATTCTGAAACAACCATCCACTTCTGGGGTCCATCATCTGTAGACCACAGC
ATCGATGACAGACCGGTGATGCTTCTCCTTCACGGCTTCGGTCCATCTGC
CATGTGGCAGTGGCGAAGACAGATTCAAGCCTTCTCACCGTCTGTGTTCC
GGGTATATTGTCCTGATCTTGTTTTCTTTGGTGACTCTACCACTTCATCC
ACCAATCGTTCCGAGGTCTTCCAGGCGGAGTGTATGGCAAAGCTAATGGA
GAAACTAGGAATAGAGAAGAAGTTTAATGTAGTTGGAACAAGCTATGGCG
GATTTGTGGCGTACCATATGGCAAAAATGTGGCCTGAAAAAGTGGAGAAA
GTAGTGATTGCAAGCTCCGGCATCAACATGAGAACGTGTGACAGTGAAAG
TTTATTGCAAAGGTCGAACTGTGAGTGCATTGAGAAAGTTATGTTACCAT
CTACTGCGTCCGAGCTTCGGACACTTATGGGTTTGGCATCTTCTTGGAGG
ATGCTTCGTATGTTTCCTGATGCTCTCTGGAATGACTTCATTAGTAATTT
ATATCAAAAGAATAGAAAAGAGAAAGTAGAATTATTGAAGGGGTTGACTC
TTGGCAGGGAGGAGAAATTAAACATCGAACCTCTTTCTCAGGGGATCCTA
ATAATATGGGGAGATAAAGATCAGATATTTCCCGTGAAGATGGCCTACGA
ACTAAAAGAGATTCTTGGAGATAAGACAAAACTGGAAATCATTGAGAACA
CTTCACATATTCCCCAAATCGAATGTGCCCAAGAGTTCAACAACGTCGTT
TTGAGATTTTTGAAAGGATCTCAATAG

Orthology

View orthology data for BnaA01T0000200WE